KEGG   Brassica rapa (field mustard): 103858779
Entry
103858779         CDS       T03449                                 
Name
(RefSeq) DNA mismatch repair protein MSH6
  KO
K08737  DNA mismatch repair protein MSH6
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    103858779
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brp03400]
    103858779
DNA repair and recombination proteins [BR:brp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     103858779
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_IV MutS_II PTM_DIR17_Tudor LBR_tudor
Other DBs
NCBI-GeneID: 103858779
NCBI-ProteinID: XP_009134448
UniProt: M4C9L7
Position
A03:complement(14726705..14734163)
AA seq 1337 aa
MAPSRRQISGRSPLVNPQRQITSFFGKSASSSSPSPSPLSNTKTPKSKPNPNSPSPSPLS
NTKIPKSNSNPSSPPLSNNKLPKSNPPARSPSPGPTTPSPVHPKLKKPLLVIGQTPSPPK
FTETTYGDEVVGKQVRIYWPLDKKWYDGSVTSYNKGEGKHVVEYEDGEEESLDLGKEKIE
WVVEGDSVNRFKRLRRGASAFRRVVTDEDEDVEMGNVEEEKEDKSDGDDSSDEDWGKNVG
KEVCESEEDDVELDAEDDTMDEEEIVEEKDEETPSKTDSRKRKKTSEVAKPGVEKKIKTD
KVTTFKGFKASVVEPVKKIGEADKVVKSLDDNMLDGDALARFGARESEKFRFMGIDRRDA
KRRRPTDENYDPRTLYLPPDFVKRLTGGQRQWWEFKSKHMDKVLFFKMGKFYELYEMDAH
VGAKELDLRYMKGEQPHCGFPEKNFSVNIEKLVQKGYRVLVVEQTETPDQLERRRKEKGS
KDKVVKREICAVVTRGTLTDGEMVLTNPDASYLMALTEGGESLTDEKAEHNFGVCLVDVA
TKKIILGQFKDDQDCSALSCVLSEIRPVEVIKPANALSSATERTIVRHTRNPLVNNLVPL
SEFWDAEKTIHEIGILYKGFSCQPSSAYSGEGKVLGDPPLNNESGSSCLPKMLSELANGD
KDGSLALSALGGAIYYLRQAFLDESLLRFAKFESLPYCDFSNFTVKQHMVLDAAALENLE
IFENSRNGGVSGTLYAQLNQCITASGKRLLKTWLARPLYNPELIKERQDAVAILRGENLP
YSLEFRKALSRLPDMERLIARIFSSIEASGRNGDKVVLYEDVAKKQLQEFISTLRGCETM
VEACSSLRASLEHDNSRRLRHLLTPGQSLPNISPFIKYFKDAFDWVEAHDSGRVVPHEGA
DEEYDFTCKTVKELEVSLTKHLKEQRKLLGDASIKYVTVGKDEYLLEVPESLSGSIPQDY
ELCSSKKGVFRYWTPTIKKLLKELAQAKSEKESALKSISQRLIGRFCEHQEEWRQLVSAT
AELDVLISLAFASDSYEGVRCRPVISSSKSVDVPHLSATGLGHPVLRGDSLGRGSFVPND
VKIGGAKQASFILLTGPNMGGKSTLLRQVCLAVILSQIGADVPAETFELLPVDRIFVRMG
AKDHIMAGQSTFLTELSETAVMLSSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIDK
VQCRGMFSTHYHRLSMDYQTNPQVSLCHMGCQVGEGSGGVEEVTFLYRLTPGACPKSYGV
NVARLAGLPDDVLQRAVIKSQEFEGLYGKNHKKADRKMAEMIKQIISGVASDSDTATSKH
LLSELHYKANTYLRLTN
NT seq 4014 nt   +upstreamnt  +downstreamnt
atggcgccgtctcgccgtcagatcagcggaaggtctccgttggtcaatcctcagcgtcaa
atcacctccttcttcggcaaatccgcttcatcttcttctccctctccatcgccactctcc
aacaccaaaacccccaaatcaaaacctaaccctaattctccgtctccatcgcctctctcc
aataccaaaatccccaaatctaactctaaccctagctctccgcctctctccaataacaaa
ctccctaaatcgaatcctcctgctcgtagtccaagccccggtccgacgactccttctcct
gtacaccccaagctcaagaagccactcctcgtcatcggacagacaccttcgcctccgaaa
tttacggaaactacgtatggagacgaagtggtggggaagcaagttaggatttattggccg
ttggataagaaatggtacgatggaagcgtgacatcgtacaataagggtgaaggtaagcat
gtggttgagtatgaagatggggaagaggagtctttggatttagggaaggagaagatcgaa
tgggtggttgagggggactcagtaaataggtttaagcgattgagaagaggagcttcggct
ttcagaagagttgtgacggatgaagatgaggatgtggagatgggtaatgtggaagaagag
aaagaagataaaagtgatggtgatgattctagtgatgaggactggggaaagaacgtgggg
aaggaggtgtgtgagagcgaagaagatgatgtggagttggatgctgaggatgatacgatg
gatgaagaagagatagtggaggagaaagatgaagaaactccttccaaaactgactctaga
aagcggaagaagactagtgaagtagcgaaaccaggtgttgagaagaaaatcaagactgat
aaagttactaccttcaaaggttttaaggcttctgtggtggaacctgtgaagaagattgga
gaagctgataaggttgtcaagagtttggatgataacatgttggatggggatgctctggct
agattcggtgcgcgtgaatctgagaaatttcgcttcatgggaatagaccgcagagatgca
aaaaggagacgacctaccgatgagaattatgatccgaggacactctaccttcctcctgat
tttgtcaagagattaacaggaggccagagacaatggtgggagtttaaatcaaaacatatg
gacaaagttcttttcttcaagatgggtaaattctatgagctttatgagatggatgcgcac
gtaggagccaaggaacttgatttacggtacatgaagggagaacaacctcattgtggattt
cctgagaagaacttctctgtaaacatcgagaaattagttcaaaagggctaccgggtttta
gtggtggagcaaacagaaacacctgatcagctggagcgacgccgaaaagagaaaggctcc
aaggataaagttgtgaagcgtgaaatatgtgcagttgttacaagaggcacgctgacagat
ggggagatggtattaactaatccagatgcatcttatcttatggcgttgactgaaggagga
gagagtttaactgacgagaaagcagagcacaattttggtgtatgtttggttgatgttgca
acaaagaagatcatccttgggcagttcaaggatgatcaagattgcagtgcattgtcttgc
gtgctctctgagataaggccggtggaagttattaaaccagctaatgcgctgagttctgca
acagagagaacaatagttagacacaccagaaatcccttggtaaataatctggttccactt
tctgaattctgggatgcagagaagaccatacatgaaattgggattctctacaagggattc
agttgtcaaccgtcttctgcttattccggtgagggaaaagttctaggagatccacccctt
aacaatgaaagtggttcaagctgcctaccaaaaatgttgtctgaattagcaaatggagat
aaggacggtagcctggcactctctgctcttggtggtgccatttactacctgagacaagct
ttcttggatgagagtctacttagatttgccaagtttgaatccctgccttactgtgatttc
agcaactttactgtgaaacagcacatggttcttgatgctgctgctcttgaaaaccttgag
atatttgaaaacagcagaaatggaggcgtttcgggaacgctgtatgcacaattgaaccaa
tgtatcactgcgtctgggaaacggttgctgaaaacatggctggcaagacctttatataat
ccagaactgatcaaggaacgtcaagatgctgtagcaattcttcggggggaaaatctccct
tactcgctggaattccggaaggcgctgtcaagacttccagacatggagcggttgattgca
cgtatcttttctagcattgaagctagtggaagaaatggagacaaagtggttctatatgag
gatgtagcaaagaagcagctacaagagttcatatcaactctacgtggttgtgaaacaatg
gtagaagcatgctcttcccttcgtgctagtttggagcatgataattccagacgcctgcgt
catttacttactcctggtcaaagtcttccaaacatctcacccttcattaagtattttaag
gatgcttttgactgggtagaagctcacgattctggacgtgtagtacctcatgaaggagct
gatgaagaatacgattttacctgcaaaacggtaaaagaattggaagtcagtttgacgaaa
catctgaaggagcaacgaaaattactcggagatgcatcgataaagtatgttactgttggg
aaagacgaatatctcttggaagttcctgaaagtttaagtgggagtattcctcaggattac
gaattatgctcatccaaaaagggtgtctttcgatattggactcctaccatcaagaaatta
ttaaaagagctagcacaagcaaaatctgaaaaagagtctgctctaaaaagcatttcacaa
agattgattggacgtttctgcgagcatcaagaagaatggagacaattggtttctgcaaca
gccgagctagacgtgttgatcagcctcgcttttgcaagtgattcttacgaaggagtaaga
tgccgtccagtaatatcaagttctaaatctgttgatgttccgcacttgtcagccactggt
ctagggcatccagttctgaggggtgattcattaggcagaggctcttttgtaccaaatgat
gtaaagattggtggggctaagcaggccagcttcatcctcctcacaggccctaatatgggt
ggaaaatcaacccttcttcgccaagtttgcttggctgtgatcttgtctcagattggagca
gatgtcccagcagaaacctttgagcttttgcctgttgacagaatatttgtccggatgggt
gcaaaagatcatattatggcaggacaaagcacgtttttaacagaactatcagaaactgct
gtaatgctgtcatcagcaactcgaaactcgctggtggtgctagatgagcttggacgagga
acagccacatcagatggacaagccattgcggaatccgttcttgagcacttcatagacaaa
gtgcagtgtagaggaatgttctctactcattatcatcgtctctctatggattatcaaacc
aatccacaggtatcgctttgccatatgggatgtcaagtgggagaaggaagtggtggagtg
gaagaagttacatttctctacagattgacgcctggtgcatgtcctaaaagctatggagtt
aacgttgctcgcttagctggtcttccagatgatgtacttcagagagccgtgattaaatcc
caagagttcgaaggcttatatggtaaaaaccataaaaaggctgatcgtaaaatggcagaa
atgataaagcagatcatcagtggtgttgcatcagattctgatactgcaacttcaaagcac
ttgctgtctgagctacactacaaggctaacacttatctccggctaaccaattga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (13)   

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