KEGG   Butyricimonas faecalis: D8S85_16880
Entry
D8S85_16880       CDS       T05785                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
buy  Butyricimonas faecalis
Pathway
buy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:buy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    D8S85_16880 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:buy03400]
    D8S85_16880 (mfd)
Enzymes [BR:buy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     D8S85_16880 (mfd)
DNA repair and recombination proteins [BR:buy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      D8S85_16880 (mfd)
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID ResIII Cas3-like_C_2 RecG_dom3_C UB2H GPR128_GAIN_subdom_B DUF2141
Other DBs
NCBI-ProteinID: AZS31062
UniProt: A0A3S9VWZ3
Position
3881661..3884966
AA seq 1101 aa
MEAKELLDLFQDHPVVQKIAGRLRKQAGTKIKLENGIGSLVAFIAGAVGRELNGLQLFVL
NDKEEAAYFYNDLLTFYDEERVRFLPSSFRRSGNFEDKDNDSILVRTEVLNALTAKEVGM
VVTYTEAMAERVVSKKMLADMSMPVIKGNKLSITFLESLLGEYGFERSDFVYEPGQFSIR
GSIVDVYSFAEERPVRIDFFGDEVESIRYFDVETQLSEQLIDKVVIVPDLSESTDKNDNV
GLTEFLGRETTWWMKNSLLIHDRINSLKELDAGEFLITSDSLFRTIEENSVVEWGPELFF
RGEVIRLEAEVQPAVNKQFDLLAEHLLDKQMDRYTVYLCSTNDMQLQRLRDIFSDKGHEV
NFVPVEGTIHEGFSDAQIKVCIYTEHQIFDRYQKYRLKTSQIRKGRESITISDLQNLHPG
DYVVHIDHGIGRFGGLTKIDNDGKIQEAIRLVYKNNSELYVSLHSLHKISKYKGKDGEPP
TVSKLGGEAWNKLKQRTKSRVKDIARELIALYAKRRREEAYAFSKDSFLQDEMEASFMYE
ETPDQMKAIEAVKADMESPHVMDRLICGDVGFGKTEVAIRAAFKAVADSKQVAVLVPTTV
LAYQHYNTFKKRLEGMPCRIEYISRMKKSADIKRILKDLEVGKVDIIIGTHRLTSNDVKF
KDLGLLVIDEEQKFGVAVKEKLKRLKLNVDTITMTATPIPRTLQFSLMGARDMSIIRTAP
PNRYPIVTELHRFDEKVIKEAISYEVSRGGQVFFIHNRVDNIRDIQYMIHRLIPGIKSCV
GHGQMSGEELETVMHDFVRGDYDVLIATTIVESGLDIPNANTIIINQAQNYGLSDLHQLR
GRVGRSNRKAFCYLLAPPLELVNADARRRLKAIEDFSGLGSGFNIAMQDLDIRGAGNILG
GEQSGFIAEVGYETYQRILNEALVELRDEEFPELQKEHPDEPTVFATDCVIDTDFALLIP
DTYVENVSERIRLYRELDNITNEEALQRFEIEMKDRFGEIPTPVVGLMEVVRIRQKCIDL
GIERLMVKNNKMIVYFISDQNSSFYASPVFSELLKFIQKQVIPCKISEKNDKLSLVFTNI
ADINRVSEIIREMRDFAYGNN
NT seq 3306 nt   +upstreamnt  +downstreamnt
ttggaagcaaaagagttattagatttatttcaagatcatcctgttgttcagaaaattgcc
ggtcgtttgcgtaagcaggcggggacaaagataaagctggagaacgggatcggttcgctg
gtggcttttatcgcgggcgccgtgggacgagagttgaatgggttgcagcttttcgtgttg
aacgacaaggaggaagcagcttatttttataatgatttattgactttttatgacgaggaa
agagtgcgttttctgccttcttcgtttcggcgttccggtaattttgaagataaagataac
gattcgatcttggttcggacagaggtgttgaatgccttgacggccaaggaagtgggaatg
gtggttacttacacggaggcgatggctgagagggtggtgagtaagaagatgttggctgac
atgtcgatgcccgtgataaaagggaataagttgtcgataacattcctagagtcgttgttg
ggagagtatggtttcgagcggagtgatttcgtgtatgaacccgggcagttttctattcgg
gggagtatcgtggatgtctattctttcgcggaagagcgtccggtgcgaatagattttttc
ggggacgaggtggaaagcatccgttatttcgatgtcgagacacagctttccgagcagttg
attgacaaggtggtgatcgtgcctgatttgagtgaatcaacggataagaatgataatgtt
ggattgacggagtttcttggaagagagactacctggtggatgaagaattccttgttgatt
catgaccgcatcaattcattaaaagagttggatgccggagagtttttgattacgtcggat
agtttgtttcggacaatcgaagagaacagtgtggtggagtggggaccggagttgtttttc
cggggtgaggtgattcgcttggaggcggaggtgcaaccggccgtaaataaacaatttgat
ttattggcagagcatttgctggacaagcagatggatcggtacacggtttatctttgttcc
acgaacgatatgcagcttcagcgattgcgggatattttctcggacaaggggcatgaggtg
aattttgtgcccgtggagggaacgattcacgagggattcagtgatgcccagattaaggtg
tgtatttacacggagcatcaaatttttgaccgttaccaaaaataccgcttgaagacttcg
caaatacgaaaaggtcgggagtccatcacgatcagtgatttgcagaatttgcatcccggt
gattacgtggtgcatattgatcatggaatcggacgtttcggtgggttgacaaagatcgat
aatgacggaaagattcaggaggccatacgtttggtgtataagaacaattctgaattgtac
gtgagtctccattcattgcataaaatttccaagtacaagggaaaggatggagaaccgcca
accgtgagtaagttaggtggggaggcttggaataaattaaagcagcggacgaagtcgagg
gtaaaggatattgcccgagagttaatagccttgtatgccaagcgcaggcgggaggaagct
tatgctttctcgaaagatagttttttgcaggatgagatggaggcttccttcatgtacgag
gaaacgccggatcagatgaaagcgattgaagcggtgaaagcggacatggagagtcctcac
gtgatggaccgtttgatttgtggggacgtgggattcgggaaaacggaagtcgctatccgg
gcggcatttaaggcggtggccgatagcaagcaggtggccgtgttggtgccgacaacggtt
ttggcttatcaacattataatactttcaagaagcgcctggaggggatgccttgccggatc
gagtatatcagccgaatgaaaaagagtgctgatattaagcgaattttgaaagatctggaa
gtggggaaggtggatattatcatcgggacgcatcgtttgacaagcaatgatgtaaaattt
aaggacctcggtttactggtgattgatgaagagcagaagttcggggtagcggtgaaggag
aagttgaaacggttgaaattgaacgtggataccattaccatgacggccacgccgatcccg
cgaacgttgcaattctcactgatgggggcgagggatatgtcaataatccgtacagccccg
cccaatcgttacccgatcgtgacggaattgcatcggtttgatgaaaaagtaattaaggag
gcaatttcttacgaggtgagccgcgggggacaggtgttttttattcataaccgggtggat
aatatccgggatattcaatatatgattcatcgtttgattcccggcatcaagagttgtgtg
ggacacgggcagatgagtggggaagagttggaaacggtgatgcatgatttcgtgcgggga
gattacgatgtgttgattgccacaacaattgtggagtcggggttggatattcctaacgcg
aatacgattattattaatcaggcccagaattacgggctgagcgatctgcaccagttgcgg
ggccgggtgggacgttccaacaggaaggctttttgttatttgttggccccacccttggaa
ttagtgaacgcggatgcccggagacgtttgaaggcgatcgaggattttagcggtttgggg
agtgggttcaatattgccatgcaggatttggatattcgcggggccgggaatattttggga
ggagaacaatccggtttcatcgcggaagtggggtacgagacgtatcaaagaattctgaac
gaggcgttagtggaattgagggacgaggagtttcctgaattgcagaaagagcatccggat
gagccgacggtgtttgccacggattgtgtgattgatacggattttgctttattgattccc
gatacttacgtggagaatgtgagtgaacgaatccggttgtaccgggagttggataacatc
acgaatgaggaggctttacagcgttttgaaatagaaatgaaggaccgctttggcgagatt
ccgacgccggttgtcgggttgatggaagtggttcggattcgtcaaaagtgtatagatttg
ggaattgaacggttgatggtgaagaataataagatgattgtttactttatcagtgatcag
aattcgtcattttatgcctcacccgtgtttagtgagctattgaaatttatacagaaacag
gtgatcccttgcaagatcagcgaaaagaatgataagttgagtctggttttcacgaacatt
gccgatattaatcgggtatcggagattatacgagagatgcgcgactttgcttatggtaat
aattag

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (13)   

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