KEGG   Cynara cardunculus var. scolymus (artichoke): 112512222
Entry
112512222         CDS       T05604                                 
Name
(RefSeq) uncharacterized protein LOC112512222
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112512222
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112512222
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112512222
Enzymes [BR:ccav01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     112512222
Messenger RNA biogenesis [BR:ccav03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     112512222
DNA repair and recombination proteins [BR:ccav03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      112512222
SSDB
Motif
Pfam: DEAD Helicase_C RQC RecQ_Zn_bind ResIII Cas3-like_C_2 Utp25_C
Other DBs
NCBI-GeneID: 112512222
NCBI-ProteinID: XP_024973857
Position
LG 5:complement(3645627..3653437)
AA seq 527 aa
MEMESTLKEYYGFSTFRPYQKEIIEKILGGRDSLVVMATGSGKSLCYQVPPLIAKKTAIV
ISPLISLMQDQVMALKQRGIKAEHLSTAQTNLSAQRNAENGEYDILYMTPEKACFVPNSF
WSRLLTTGICLVAVDEAHCISEWGHDFRVEYKQLYKLRDVLLDVPFVGLTATATEKVRND
IVDSLRMKDPHVAIGSFDRKNLYYGVKSINRGSSFVDELVAQISKHVANAGSTIVYCTTI
KDVQEITKSLCEVGIKAGMYHGQMSNKAREESHRSFIRDELQVMVATIAFGMGIDKPDIR
HVIHYGCPKSLESYYQESGRCGRDGITSDCWLYFSRSDFGKAEFYCGEASSVNQKKAIMD
SFMAAQRYCMKATCRRKLLLEYFGETFASNKCGNCDNCTDSKEESDISREAFLLMGCIQS
CGGYWGLNLPIDVLRGSRAKKITENQFDNLPYHGLGKDFSANWWKMLGFQLISFGMQQIL
CTKIYSKPPWRHLFARLGLFGPDPGFVVERGPDRAFSGRAFSGLTSH
NT seq 1584 nt   +upstreamnt  +downstreamnt
atggaaatggagtccactctcaaggaatattatgggttttcgacatttcgaccgtatcag
aaggagataattgagaagattttggggggaagagatagcttggttgttatggctactggt
agcggcaagtctctatgctatcaggtccctccattgattgcaaaaaagactgctatagtt
ataagcccacttatttctttgatgcaagatcaggtgatggctttgaaacagaggggtatt
aaagctgagcatctctctactgcccagaccaacttaagtgcacaaaggaatgctgaaaat
ggtgaatatgacattctgtatatgactccagagaaggcatgttttgttcctaacagcttc
tggtcgaggttgcttaccacaggaatttgcctagtggcagttgatgaagcacactgcatc
tcggagtggggccatgattttcgggtggagtacaaacaattatacaagctgcgagatgtt
ttgttagatgttccatttgttggattgacagcaacagctacagaaaaggttcgaaatgat
atagttgattcgcttaggatgaaagaccctcatgttgctattggatcattcgatcgtaaa
aacctctactatggtgtgaaatctattaaccgtgggtcttcatttgtggatgagctagtg
gcacaaatttctaaacatgtagcaaatgctggatcaactattgtatactgtacgaccatc
aaagatgtccaagagattaccaaatcactttgtgaggtcggaatcaaggctggaatgtat
catggtcaaatgtctaacaaggctcgtgaagagtcacacagatcttttataagggatgag
ctccaggtcatggttgcaactattgcttttggaatgggtattgataagccggacataaga
cacgttatccactatggatgccccaagagtttggagtcctattatcaagaaagtggacga
tgtggtcgagatggtatcacttctgattgctggctctacttttcaagaagtgactttgga
aaagctgaattctattgtggagaagcaagctcagtaaaccagaagaaagctattatggat
tcatttatggctgctcaacgatattgcatgaaggcaacttgcagaagaaaattattgctg
gagtactttggggaaacatttgcatctaataaatgtggaaattgtgataattgcaccgac
tctaaggaggagagtgatatttctagagaagcatttctgctgatgggttgcatccagtca
tgtggtggttactggggccttaacttgcctatagatgttcttcgaggttctcgtgccaag
aagattactgaaaaccagtttgacaatctcccataccatggacttggaaaagatttttca
gcaaattggtggaagatgctgggttttcaactaatttcttttggtatgcaacaaattctt
tgtactaaaatctactctaaaccaccatggcgacacctatttgctcggctcgggcttttt
gggcccgacccaggctttgtggttgaaagagggcccgatcgggccttttcaggccgggct
ttttcgggattaaccagtcattga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (12)   

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