KEGG T02983: 102619121

Citrus sinensis (Valencia orange): 102619121

Entry

102619121         CDS       T02983

Name

(RefSeq) transcription factor bHLH140 isoform X1

K10863

aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]

Organism

cit Citrus sinensis (Valencia orange)

Pathway

cit03410

Base excision repair

Brite

KEGG Orthology (KO) [BR:cit00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    102619121
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cit03400]
    102619121
Enzymes [BR:cit01000]
3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.1  In phosphorus-containing anhydrides
    3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase
     102619121
    3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase
     102619121
    3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase
     102619121
DNA repair and recombination proteins [BR:cit03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     102619121
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     102619121

SSDB

Motif

Pfam:

DcpS_C AAA_33 HIT zf-C2HE Macro AAA_18 nSTAND3 Viral_helicase1 Zeta_toxin NACHT AAA_17 G-alpha ATP_bind_1 AAA_16 AAA_22 AAA_25 Csx1_CARF RsgA_GTPase AAA 6PF2K CPT RNA_helicase

Other DBs

NCBI-GeneID:

102619121

NCBI-ProteinID:

XP_006481077

Position

6:complement(join(17078362..17078694,17079177..17079347,17079442..17080111,17080459..17081414,17081987..17082108,17082226..17082262))

AA seq 762 aa
MDMEIDDTCKAKDEEKKWKQILVIMVGAPGSGKSTFCEHVMRSSARPWARICQDTINKGK
SGTKVQCLTSASSALKEGKSVFIDRCNLEREQRTDFVKLGGPEVDVHAVVLDLPAKLCIS
RSVKRIEHEGKLQGGKAAAVVNRMLQKKELPKLSEGFSRITLCQNENDVQAALDTYSGLG
PLDTLPHGSFGQKNPDAKIQLGIMKFLKKVDAPSNTGSNASSTQDPVPPQITEEKNSCLE
GQEITSLLSDAAGEEVKRIENPEVASVNQNGSSSDVPTLAFPSLSTSDFQFNNDKASDVI
IEKVEEYVNKLGNARLVLVDLTHGSKILSLVRAKAAQKHINPKKFFTFVGDITRLYTGGG
LCCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATAERAKSLYPGNSVIVPLPSTSPL
CDREGVTHVIHVLGPNMNPRRPNCLHGDYVKGCEILRKAYTSLFEGFLSIVRSQEKLSKG
CNEDIRLEPSVSQDHSEDVHGNYISTGDKIKRDGGHEYERSKKCKGAQNEVGTDINLSRA
ANLNADNEKIGVSTSKAWGSWAQVLYRTAMHPERHKDDLLEISDDVVVLNDLYPKAQKHI
LVLSRFDGLDRLADVRNEHLQILQTMHTVGMKWAEKFLHEDASLAFRLGYHSAPSMRQLH
LHVISQDFNSKHLKNKKHWNSFNTAFFCNSVDVLEEIINHGKATLKDDDSLLSMELRCHR
CRSAHPSIPRLKSHISSCRAPFPSSLLENGRLVLAPRNSAKP

NT seq 2289 nt +upstreamnt +downstreamnt
atggatatggaaattgacgatacttgcaaagccaaagacgaagaaaagaagtggaagcaa
atcctggtgataatggtgggtgcgcccggcagcggcaagtcaacgttctgtgagcacgtc
atgcgttcttctgcccgaccctgggcacgtatttgccaggacactattaataaaggaaaa
tctggaacaaaggttcagtgcctgacgagtgcatcaagtgcattgaaggagggaaaaagt
gtatttatagacaggtgcaacctagagagagaacagcgcacagattttgttaagcttgga
ggcccagaagtagatgtgcatgctgtggtgcttgatcttccagccaagctttgtatatct
cgatctgttaaacgtattgagcatgaagggaaattgcaaggtggaaaagctgcagcagtg
gtgaacagaatgcttcaaaagaaagaattgcctaagctgagtgaagggttctctcgaatt
acgttatgccagaatgagaatgatgttcaagctgcacttgatacgtacagtggacttggt
ccattagataccctcccacatggttcttttggccagaagaatccagatgccaaaattcaa
cttggtataatgaaattcttgaagaaagtagatgctccttctaatacagggtctaatgca
agcagcactcaggatcctgtgcctcctcaaattactgaagaaaagaatagctgccttgaa
ggacaagaaattacttctttgttatcagatgctgcgggggaagaggtaaagcgaattgaa
aacccagaggtggcctctgtcaaccagaatggttcttcaagtgatgttccaactctggca
tttccgtctctttcaacatcagattttcaattcaataatgacaaggcctctgatgtaatc
attgaaaaagttgaggaatacgtaaacaagcttggaaatgccaggctagtattagtggat
ttgactcatggatcaaagattttgtctttggttagggccaaagctgcacaaaaacacatc
aaccctaaaaagttcttcacgtttgttggagatattactcgactttatacaggaggaggt
ttatgctgcaatgtaatagctaatgctgccaactggcgactaaaacctggaggtggaggt
gtgaatgctgcaattttcagtgctgcagggcctgctctagaggttgcaactgcagaacgg
gctaaatctctttaccctgggaattctgttattgttcctctcccttcaacttctcccttg
tgtgatagggaaggtgtgacccatgttatacatgttcttggacctaatatgaacccacgt
agaccaaattgtcttcatggtgactatgttaaaggctgtgaaattcttcgtaaggcttac
acctcactttttgaaggttttttatccatagtgaggtcccaagagaagttatccaaggga
tgcaatgaagacattcggttagagccttcagtttcacaagatcactctgaggatgtccat
ggaaattatatttcgactggtgataaaattaaaagagatggtggccatgaatatgaacga
agtaagaaatgtaagggagctcaaaatgaagttggaactgatattaatctttctagggct
gcaaacttaaatgcagacaatgagaagattggtgtaagcacttctaaggcctggggctct
tgggctcaagttctttatcgcacggccatgcatcctgaaaggcataaagatgatctgctt
gagatatcagatgatgttgttgtactaaatgatctttatccaaaggctcagaaacacatt
ttggtgctgtcacgattcgatggtcttgatcgcttggcagatgtacgaaatgaacatctg
caaattttacaaacgatgcatactgtgggtatgaagtgggctgagaagttcttgcatgaa
gatgcatcattggccttccgtcttggatatcattcggctccatctatgcgccaactacac
ctacatgttattagccaagattttaactccaagcatcttaagaataagaagcactggaac
tctttcaatactgcatttttttgcaattcggttgatgtacttgaagaaatcattaatcac
ggcaaagcaacattaaaagatgatgatagtttgttatcgatggagttgcgatgccaccgg
tgtagaagtgcacatcctagcatacccaggttgaaatcacatattagcagctgtcgagct
ccctttcctagcagcctacttgaaaatggtcgtctcgtgcttgctccaagaaacagtgcc
aaaccgtag

All links

Gene (19)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (22)   
   Pfam (22)   
All databases (47)   

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