KEGG   Colwellia sp. PAMC 20917: A3Q34_16625
Entry
A3Q34_16625       CDS       T04511                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
coz  Colwellia sp. PAMC 20917
Pathway
coz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:coz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3Q34_16625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:coz03019]
    A3Q34_16625
   03400 DNA repair and recombination proteins [BR:coz03400]
    A3Q34_16625
Enzymes [BR:coz01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     A3Q34_16625
Messenger RNA biogenesis [BR:coz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     A3Q34_16625
DNA repair and recombination proteins [BR:coz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      A3Q34_16625
SSDB
Motif
Pfam: RQC DEAD HRDC Helicase_C RecQ_Zn_bind OST3_OST6
Other DBs
NCBI-ProteinID: AOW78321
UniProt: A0A1D8RYZ0
Position
complement(3879508..3881304)
AA seq 598 aa
MDINTAKSVLQNTFGYADFRHQQAKIISELISGADVFTLMPTGGGKSLCYQIPAIVRDGV
GIVVSPLIALMKDQVDALKLQGVKAEFLNSSQDHEEQNRVEQLIRSGNVDLLYVAPERLL
SDYFLNLIDNITIALFAFDEAHCVSQWGHDFRPEYQQLSIISQRYPHTPKIALTATADMK
TRDEIVQVLNLTAAKIFVHSFDRPNIQYRISEQKNNKEQLLKFINTEHNNDAGIVYCLSR
KSVEATAQWLSEQGKVALPYHAGLANNIKDSNQQRFLREDGIIIVATIAFGMGIDKPDVR
FVAHLNLPKSIEAYYQETGRAGRDGMPANTWLAYGMQDVIKLKQMTSQSSGNEQFKFITQ
RKIDALLGYCEVCSCRRQVLLNYFGETLAEPCGNCDNCLNPPITWDGTAAARKALSTVYR
TGQRFGVGHQIDVLLGKQTPKVIQVNHQQLSTYGIGKEHKAEEWQTVFRQLISMGYLAVE
MEYGALKLTEKSRPLLKGELTIQLKVKEYGKAKLARKSKQPNASNLSAQEETVFEKLKQQ
RALWAKERNVPSFVIFHDATLMDIARANPKNSAQLLNVNGIGKTKLELYGEKIIALLH
NT seq 1797 nt   +upstreamnt  +downstreamnt
atggatatcaatacggcaaaatcagttttacaaaatacctttggttacgctgactttcga
catcaacaagcgaaaataattagtgaattaatcagtggcgcagatgtttttacgcttatg
ccaaccggtggtggaaagtcattatgctatcaaataccggcgatagttcgtgatggcgta
ggcatagtggtgtcgcctctaatagcgttaatgaaagatcaagttgatgcgctaaaacta
caaggcgtaaaagcagagtttttaaattcgtcgcaggaccatgaagaacaaaatcgtgtc
gagcagctaataagatcaggcaatgtcgacttattgtacgttgcgccagagcgactattg
agtgattattttctaaaccttattgataatattaccattgcactctttgcctttgatgaa
gcacattgtgtttcacaatggggtcacgatttcagacctgaataccaacaactgtccatt
atcagccagcgatatccccacacgcctaaaattgccttaacagcgacagcggatatgaaa
acgcgagatgaaattgttcaagtattaaatttaacggccgctaaaatctttgttcatagt
tttgacagacccaatattcagtatcggatcagtgaacaaaaaaataacaaagaacagctc
cttaaatttatcaataccgaacataacaatgatgccggtatcgtttattgtctttcaaga
aaatctgttgaggccacagctcaatggctgagtgaacaaggaaaagttgctttgccttat
catgcaggtttggccaataatattaaagatagcaatcaacaacgttttctcagagaagac
ggcataataatcgttgccaccattgcctttggtatgggtattgataagcccgatgttagg
tttgtcgcccatttaaatttgcctaaaagtattgaggcctactaccaagaaactggccga
gcaggccgtgatggtatgcccgccaatacttggttagcgtatggcatgcaagatgtcatt
aagctaaaacaaatgacaagtcaaagtagtggaaatgaacagttcaagtttataactcaa
cgtaaaattgatgccctgcttggttattgcgaagtgtgctcttgccgccggcaagtatta
ctcaattattttggtgaaacgttagctgagccttgcggaaattgtgataactgtttgaat
ccacccataacatgggatggcactgctgccgctagaaaagcactttcaaccgtttatcga
acgggccaaagatttggcgtaggccatcaaattgatgtcttgctaggtaagcaaacccct
aaagttatccaggtcaatcaccaacaactgtccacctatggtattggtaaagagcacaaa
gcagaggaatggcaaacggtgtttaggcaactcatttcaatgggatatttagccgtagaa
atggaatatggcgctttaaaacttactgaaaaatctcgacctttattaaaaggcgaactg
accatacaactcaaggtaaaagaatacggtaaggcaaagcttgcgcgaaaatcaaaacaa
cctaatgccagcaatttatcagcacaagaagaaaccgtatttgaaaagctgaagcaacaa
agagcattatgggcaaaagagagaaatgtaccatcattcgttatttttcatgacgctacc
ttaatggatatagccagagctaatcccaaaaactcagcgcaactattaaacgttaatggt
ataggtaaaacaaaacttgagctttatggtgaaaaaattatcgcactactacactag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (9)   

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