KEGG   Chiloscyllium plagiosum (whitespotted bambooshark): 122551629
Entry
122551629         CDS       T08871                                 
Name
(RefSeq) TRAF family member-associated NF-kappa-B activator-like isoform X1
  KO
K12650  TRAF family member-associated NF-kappa-B activator
Organism
cpla  Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04140  Autophagy - animal
cpla04621  NOD-like receptor signaling pathway
cpla04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:cpla00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    122551629
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    122551629
   04622 RIG-I-like receptor signaling pathway
    122551629
SSDB
Motif
Pfam: TBD Rootletin TMF_TATA_bd zf-WIZ Dzip-like_N DUF641 PDH_C Zn-C2H2_12 DUF1129 LMBR1 ERM_helical YwqH-like ATG16 Csm1_N GAS YabA
Other DBs
NCBI-GeneID: 122551629
NCBI-ProteinID: XP_043549790
Position
7:60307853..60402493
AA seq 498 aa
MIFCVRNIDLVNMDKNNLGEQLNRAFEAYRQACMERDNIKKVSEQKIYELEQELAIKDQT
ITKLQLQSASATPRGNIPGQAQCLNPWPQSDLLTVRRNEAQHLVTCDSPDELIVALERER
HCKERLTTENSRLEEQIKDYQQKLKELKKSIEEKDEEFRQLRNELIEHTDFFTHGKQLYC
KPESKVNRKMAESSSKNAVPLTGTDHPLYKERLDFAFQEICQEFKQLSALTKKQTELLSK
YNYSKEAINMPFSMPIQCTDEGEQEHVAEHFVGKDKSVSKSSAVLQEGYRMQQEHLQVVE
SLSELDIRFPPSDNDYDFLNSAPEKTRPKTAFEDPIRKVDEALMQGDIQDLKDKNREECT
LFETFPVGPTNKTKPNPFGDEQGKIANINTSVGTAVDNSTLRSPSSPSFLQPSKSFPNAE
SHQMISTEATVIRGPQHPVWYPYHNKEGELLHQASKDSDPDLNSKTCEFCQEVFPAGTKA
KEDFLRHLNSHFIAKNGF
NT seq 1497 nt   +upstreamnt  +downstreamnt
atgatattttgtgttcgtaatattgatttggtaaatatggataaaaataatcttggagag
cagctcaacagagcatttgaagcttatcgtcaggcatgtatggagagagacaacatcaaa
aaagtatcagaacaaaagatttacgagttagagcaagaactggcaataaaagatcaaacc
attacaaaattacaattgcagtctgcttctgccacccccagaggcaacattcctggacaa
gctcagtgtctgaacccttggccacagagtgacttgctgacagtgagaagaaatgaggca
caacacctagtaacatgtgattcaccagatgaattgatagtagcattagaaagggaaaga
cactgtaaggaaaggttaacaactgaaaatagtaggttggaagaacagataaaagattat
cagcaaaagctaaaagaacttaaaaaaagcattgaagaaaaagacgaagaattcagacaa
ctgagaaatgaattaatagaacacactgacttcttcacacatggtaaacagctctactgt
aaaccagagtcaaaggtaaaccggaagatggctgaatcatcatcgaagaatgctgttcct
ctgacagggactgatcatcctctgtacaaagagaggttggactttgcttttcaggagatt
tgtcaagaatttaaacaactatctgccttaacaaagaaacaaacggaacttctgagtaaa
tataactacagcaaagaagcgataaatatgccgttctcaatgcctatacagtgtactgac
gaaggagagcaagaacatgtagcagaacattttgttggcaaggacaaaagtgtatctaaa
agctctgctgtgttacaagaagggtatagaatgcaacaggaacatcttcaagtagttgag
tctctgtctgaactagatatcagatttccgccttctgataatgactatgatttcctaaac
agtgcaccagaaaaaacaagaccaaaaactgcttttgaagatcccatacgtaaagttgat
gaagcactgatgcaaggtgatatccaggacttgaaagataagaatagggaagaatgcact
ttatttgaaacgtttcctgtgggaccaactaataagacgaaacccaacccttttggtgat
gagcaaggaaagattgcaaacattaatacttctgtaggtactgcagttgataacagcaca
ttgagaagtccttcaagcccctcatttcttcaaccttctaagtcttttccaaatgctgaa
tctcatcaaatgatttcaacagaagcaacagtgatcagaggtccgcaacatcctgtgtgg
tatccataccacaataaagagggtgaattactgcatcaagcatccaaagactctgacccg
gacctaaactccaaaacctgtgaattctgtcaggaagtcttcccagcaggcaccaaagct
aaggaagacttcctcaggcatcttaattcacactttattgctaaaaatggattttaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (16)   
   Pfam (16)   
All databases (28)   

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