KEGG   Curtobacterium flaccumfaciens: GBG65_11010
Entry
GBG65_11010       CDS       T06246                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
cqf  Curtobacterium flaccumfaciens
Pathway
cqf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cqf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    GBG65_11010 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cqf03400]
    GBG65_11010 (mfd)
Enzymes [BR:cqf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GBG65_11010 (mfd)
DNA repair and recombination proteins [BR:cqf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      GBG65_11010 (mfd)
SSDB
Motif
Pfam: DEAD Helicase_C UvrB_inter TRCF CarD_TRCF_RID ResIII Cas3-like_C_2 RecG_dom3_C DUF3638 MFD_D3
Other DBs
NCBI-ProteinID: QHN63050
Position
2215800..2219408
AA seq 1202 aa
MTISGIIPALSRASAFDRVLRAAPRDADFSVVDGLRVPLLGALLAERNGPQCVLVITATG
REAEAVREAFGSYVPDADVLEFPAWETLPHERLSPSAQTVGTRIATLRKLAAWQAADPAE
RRQTIVVASVRAALQPIASNLTSLAPVVLRTDSRGNDLAAIASKLVDLAYSRVDLVTRRG
EFAVRGGILDVFPPTADHPARVDFVGDEIEAIKAFSVADQRTTEDDLGSVELTASRELLL
SDDVRQRAREMLHEFPNLSQMLAKIAEGIPVEGMESLAPALVQDLVPMTSYLPDDATIAV
FSPERVNGRANSLAETNTEFLQAAWSAAVAGAQAPIDLDAGNFLTVQQLKNTRGQRTWWT
VSPFDSGLDEGDTERVLTDAEAAAEAGEYIRVRAEAVPSFAGSADGAIAHVKSLTDDGWA
VVVTAQGQGLVERAVQVLADAGVAARAAAVDAPPEPGFAVVTTATVEHGFAIPDPRIAVL
SEAEFYGRSVQQGARTVKKLASRRKNVVDPLQLKPGDVVVHATHGIGKFVELVSREVSSG
GRNAVKTQREYLVLEYAPSKRNYPGDKLFVPTDQLDQLSRYVGGESPTLSKMGGSDWSAA
KSKARKAVRDIAVDLVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETADQLTTIDEIK
RDMERPIPMDRLLSGDVGYGKTEVAIRAAFKAVQDGKQVVMLVPTTLLVRQHMETFQERF
AGFPVHLRALSRFQTEKESKETIAGLADGTVDIVIATHRILSQGITFKDVGLVIIDEEQR
FGVEHKDQLKKFKTNVDVLAMSATPIPRSLEMAVTGIREMSTLATPPEDRHPILTFVGPQ
SDLQVAAAIRRELLREGQVFYVHNRVKDIQSVAAHLAEIVPDARIAVAHGQMSETTLEQV
MVDFWERRFDVLVSTTIIETGLDIANANTLIIDKADKYGLSQLHQLRGRVGRGRERGYAY
FLYDSEKPLSETAQDRLETIAANNELGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFD
LYLRMIGEAVSQFRGDVAEGQTELRLEIPVDAHIPEDYVESERLRLEAYQKLSAASAPTA
QSNAIDMVLDELTDRYGQPPQAVQTLVEVSHLRRMAQQVGLSDVVVMGSNLRVAGKELAD
SSQVRLKRMFPGARWFPQQNATSIPMPRPHDQALPDDALIQWVESILTAVYGATTPAEAP
AA
NT seq 3609 nt   +upstreamnt  +downstreamnt
gtgacgatctcgggcatcatccctgcgctctcgcgcgcctccgccttcgatcgcgtgctg
cgcgccgcaccgcgcgacgccgacttttccgtcgtggacggcctccgcgtgccgctgctc
ggcgcgctgctcgccgagcgcaacggcccgcagtgcgtcctcgtcatcaccgcgaccggg
cgtgaggccgaggcggtccgcgaagcgttcggcagctacgtccccgacgccgacgtgctc
gagttcccggcgtgggagaccctgccgcacgaacgcctcagcccgagtgcccagaccgtc
ggcacgcgcatcgcgacgctccggaagctcgcggcgtggcaggccgcggacccggccgag
cgtcgccagaccatcgtcgtcgcgagcgtccgcgccgcgctgcagccgatcgcgagcaac
ctgacgtccctggcgcccgtggtgctgcggaccgactcgcggggcaacgacctggcggcg
atcgcgtccaagctggtggacctcgcctactcgcgcgtcgacctcgtcacccgccgtggt
gagttcgcggtgcgcggtggcatcctcgacgtcttcccgccgacggccgaccacccggca
cgcgtcgacttcgtcggcgacgagatcgaggcgatcaaggcgttctccgtcgccgaccag
cgcacgaccgaggacgacctcggctcggtcgagctcaccgcctcgcgcgaactcctgctc
agcgacgacgtccggcagcgggcgcgcgagatgctgcacgagttcccgaacctgtcgcag
atgctcgcgaagatcgccgagggcatcccggtcgagggcatggagtcactcgccccggcg
ctcgtgcaggacctcgtgccgatgacctcctacctgccggacgacgccaccatcgcggtg
ttctcgcccgagcgggtgaacggccgcgcgaacagcctcgccgagacgaacaccgagttc
ctgcaggcggcctggagtgcagcggtcgccggtgcccaggccccgatcgacctcgacgcg
ggcaacttcctgaccgtgcagcagctcaagaacacccgcggccagcgcacctggtggacg
gtgtcgccgttcgactccggcctcgacgaaggggacaccgagcgcgtcctcaccgacgcc
gaggccgctgccgaggccggcgagtacatccgcgtccgggccgaggccgtcccgagcttc
gccggcagcgccgacggggcgatcgcgcacgtcaagtcgctgaccgacgacgggtgggcc
gtcgtggtgacggcgcagggccagggcctcgtcgagcgtgcggtgcaggtgctcgccgac
gccggggtcgccgcccgtgccgcagcggtcgatgcgccgcccgagcccgggttcgccgtc
gtgacgaccgcgaccgtcgagcacggcttcgcgatccccgacccccgcatcgcggtcctg
agcgaggcggagttctacggccgcagcgtccagcagggcgcccgcaccgtcaagaagctc
gcgagccgccgcaagaacgtcgtcgacccgctgcagctcaagccgggcgacgtcgtcgtg
cacgcgacccacggcatcggcaagttcgtcgagctcgtcagccgcgaggtctccagcggc
ggccgcaacgccgtgaagacgcagcgcgagtacctcgtgctcgagtacgcgccgtcgaag
cgcaactacccgggtgacaagctcttcgtgccgaccgaccagctcgaccagctgtcgcgc
tacgtcggtggcgagtccccgaccctgtcgaagatgggcggctcggactggtccgccgcc
aagtcgaaggcccgcaaggccgtccgcgacatcgccgtcgacctggtcaagctgtactcg
gcgcgcatggcgtcgaaggggcacgcgttcggtccggacaccccgtggcagcgcgagctg
gaagaggcgttcccgttcgccgagaccgccgaccagctcaccacgatcgacgagatcaaa
cgcgacatggaacgcccgatcccgatggaccgcctgctgtccggcgacgtcggctacggc
aagaccgaggtcgcgatccgtgccgcgttcaaggccgtgcaggacggcaagcaggtcgtc
atgctcgtcccgacgaccctgctcgtccgccagcacatggagacgttccaggagcgcttc
gccgggttccccgtgcacctgcgcgccctgagccggttccagaccgagaaggagtcgaag
gagaccatcgccgggctcgccgacggcacggtcgacatcgtcatcgcgacccaccggatc
ctgtcgcagggcatcaccttcaaggacgtcgggctcgtcatcatcgacgaggaacagcgg
ttcggcgtcgagcacaaggaccagctcaagaagttcaagacgaacgtcgacgtcctggcg
atgtcggcgaccccgatcccgcgctcgctcgagatggcggtcacgggcatccgcgagatg
tcgaccctggcgaccccgcccgaggaccgccacccgatcctgaccttcgtcgggccgcag
tccgacctgcaggtggcggcggcgatccgccgcgagctgctgcgcgagggccaggtgttc
tacgtgcacaaccgcgtgaaggacatccagtcggtggccgcacacctggccgagatcgtg
ccggacgcccgcatcgcggtggcacacgggcagatgtcggagaccaccctcgagcaggtc
atggtcgacttctgggagcgccgcttcgacgtcctcgtctcgacgacgatcatcgagacg
ggcctggacatcgcgaacgcgaacacgctcatcatcgacaaggcggacaagtacggcctg
tcgcagctgcaccagctgcgtggtcgtgtcggccgtgggcgggagcgcgggtacgcgtac
ttcctctacgactccgagaagccgctgtccgagaccgcacaggaccgcctcgagacgatc
gccgcgaacaacgagctcggcgcgggcatgcaggtcgccatgaaggacctcgagatccgc
ggggccggcaacctgctcggcggggagcagtccggccacatcgcgggcgtcggcttcgac
ctgtacctgcggatgatcggcgaggcggtgtcgcagttccgtggggacgtcgccgagggg
cagaccgagctccggctcgagatccccgtcgacgcgcacatccccgaggactacgtcgag
tccgagcgactccggctcgaggcgtaccagaagctctcggcggcctcggccccgacggcg
cagtcgaacgcgatcgacatggtgctcgacgagctcaccgaccgctacgggcagccgccg
caggccgtgcagaccctggtcgaggtctcccacctccgtcgcatggcgcagcaggtcggc
ctgtccgacgtcgtggtgatgggctcgaacctgcgggtcgccggcaaggagctcgccgac
tcgtcgcaggtgcgcctgaagcgcatgttccccggtgcgcgctggttcccgcagcagaac
gcgacgagcatcccgatgccgcgtccgcacgaccaggcgctgccggacgacgccctcatc
cagtgggtggagagcatcctcaccgccgtctacggggcgacgacccccgcagaggcaccg
gccgcgtag

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (10)   
   Pfam (10)   
All databases (11)   

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