KEGG   Cynoglossus semilaevis (tongue sole): 103391002
Entry
103391002         CDS       T04866                                 
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
csem  Cynoglossus semilaevis (tongue sole)
Pathway
csem04010  MAPK signaling pathway
csem04020  Calcium signaling pathway
csem04510  Focal adhesion
csem04518  Integrin signaling
csem04519  Cadherin signaling
csem04540  Gap junction
csem04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:csem00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    103391002 (pdgfrb)
   04020 Calcium signaling pathway
    103391002 (pdgfrb)
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    103391002 (pdgfrb)
   04519 Cadherin signaling
    103391002 (pdgfrb)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    103391002 (pdgfrb)
   04540 Gap junction
    103391002 (pdgfrb)
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    103391002 (pdgfrb)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:csem01001]
    103391002 (pdgfrb)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:csem04090]
    103391002 (pdgfrb)
Enzymes [BR:csem01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     103391002 (pdgfrb)
Protein kinases [BR:csem01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   103391002 (pdgfrb)
CD molecules [BR:csem04090]
 Proteins
  103391002 (pdgfrb)
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Ig_PDGFR_d4 Pkinase I-set Ig_3 Ig_2 VEGFR1-3_N_Ig-like ig Adeno_E3_CR1 Ig_VEGFR-1-like_5th V-set VEGFR-1-like_Ig-like C2-set_2 Zwei_Ig_N RIFIN ICAM_N EcsB Claudin_2
Other DBs
NCBI-GeneID: 103391002
NCBI-ProteinID: XP_008325328
UniProt: A0A3P8VT71
Position
15:10679134..10706589
AA seq 1103 aa
MRRMAVFKLCLTVTALLCLLTGATCLKIIPDDRELVLVQGSTLTLTCSGLGETRWEFKKD
DVPNFQVDQEQKVGKWYEVVQNGNKSSDLTLLNVSWQHTGVYLCTDQVSGESKEVTVFVP
DPKVWFTKRAHGMVTRTSEESIIPCMVTNPKIKVTLYESGSDMPISGQYNPTEGVRAAVE
DRTYQCRGELNGEVKESQEFYVFAITVPEALDAYINVSKTILKQGEALTVNCTVQGVELV
LFSWETPNHEVEPETDMLSATSMRSYLIFPRATVAHSGKYVCRVDENVKGLSASASINIT
VLERGFVDAKPAQQQDISANLQENVELRVEITAYPPPLVYWRKDGAPIKGDKTITFRQEQ
EIRYVTILTLVRVRTEQMGRYTVFITNEDDSKEVTFDLKVRVPSQIKDLTDHHLPGDRHL
VTCVAEGAPVPTIQWFSCDSMLKCNNRTAVWKSLVPQPDELTIQTNVSYNNTRKTSQIRS
QVTFNKPQQVTVRCETTNQAGHVDRRDIKLVSNTLFSQVAVLAAVLALVVIVILFFIILI
AVWRKKPRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMPRDNLVLGRTLGSGAFGR
VVEATAYGLTHLQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTK
HGPLYLVTEYCRYGDLVDYLHRNKHTFLQYYAEKNHDDSCFISGGSTPVSQRKGYVSSGS
ESDGGYMDMTKDEPSVYVPMQEQIDTIKYADIQPSPYESSYQQDIYQEQGGNRFDLVLGD
SPILTFDDLLGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHD
SNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFY
SALKRGYRMAKPAHASDEVYDIMRKCWDEKFEKRPDFSFLVHSVGNMLTDSYKKRYHQVH
ENFLKSDHPAVTRTKPRLSSPFPINTSSSSAPSLAALSFPPTPHNQTLSSGNFRPQDDTQ
EVITSYNEYIIPIPDPKPEDVFTDIPSESPTSSVALEEEEVEEESEAMSQDTADTLPEEE
EDTSERDALLGSSGTPDVEDSFL
NT seq 3312 nt   +upstreamnt  +downstreamnt
atgaggagaatggcagtgttcaagctctgtctgacagtgactgctcttctgtgtctcctc
actggggcgacgtgcctgaagatcatccctgatgacagggagctggtcctggtgcaggga
tccaccctcaccctcacctgctcaggcttaggtgagacacgttgggagttcaagaaggac
gatgtgccgaatttccaggtggatcaagagcaaaaggtcggcaagtggtacgaagtcgta
caaaacggcaacaaatccagtgatctgaccttgttaaacgtgagctggcagcacacggga
gtgtatctgtgtacggaccaagtctccggagaatcgaaggaggtgaccgtgtttgtccca
gaccctaaagtgtggttcacaaagcgtgctcatggtatggtgacgaggaccagtgaggag
agcatcatcccctgtatggtcaccaacccaaaaatcaaggtcacgctgtacgagagtggc
agtgacatgcccattagtgggcagtataaccccaccgagggggtgagggccgctgtggag
gacaggacctaccagtgccgcggagagttgaatggagaggtgaaagagtcgcaggaattc
tacgtcttcgcgattactgtccccgaggccctggacgcctacatcaatgtgtcaaagacc
atcctgaaacaaggcgaagcgctgacagtgaactgcacagtgcagggagtagagctggtg
cttttctcatgggagacccctaaccacgaagtggagccagagacagacatgctgtccgct
accagcatgcgttcctatttgatcttccctcgcgccacagtggcccacagtggaaagtac
gtctgccgagtggacgagaacgtcaagggtctgtctgcttctgccagcatcaacatcacc
gttctcgagcgaggtttcgtcgatgcaaaacctgcacagcaacaagacatttcagccaat
ttgcaagagaacgtggagctgagggtggaaatcacagcctaccctccccctctggtgtac
tggagaaaagatggtgcccccatcaaaggagataaaaccatcacattcagacaagagcag
gagatcaggtatgttactattctgaccttagtgagggtgaggacagagcagatgggtcgt
tacactgtcttcatcaccaatgaagatgattccaaggaagtgacctttgacctgaaggtc
agagttccctcacagatcaaagacctgactgaccaccacctcccaggggacagacacttg
gtgacctgtgtagcagagggagccccggtccccaccatacagtggttcagctgtgacagc
atgctcaagtgtaacaaccggacggcggtgtggaagtcactcgtcccacagccggacgag
ctgaccatccagaccaacgtcagctacaacaacacaaggaaaaccagtcagatccgcagc
caggtgaccttcaacaaaccccagcaggtcacggttcgctgcgagaccaccaaccaggca
ggacatgtggacaggcgggacattaagctggtgtccaacactcttttctcccaggtggca
gtgttggctgctgttctggccttggtcgtgatcgtcatcttgttctttatcatcctgatt
gctgtctggaggaagaaaccacgctacgagatcagatggaaggtgattgagtctgtgagt
caggacggtcatgagtacatctacgtggatcccatccatctgccttatgacctggcctgg
gagatgccccgtgataacctggtgctgggtcgcactcttggatcaggagcctttggcagg
gtggtcgaggcaacagcgtacggtctcactcatttgcagtccagtacaaaggtggcagtg
aaaatgctgaagtccacagccaggaggagcgagacccaggccctgatgtcagagctgaag
atcatgagtcacctcggacctcacctcaacatcgtcaacttgctcggagcctgtactaaa
catggccctctgtacctggtgactgagtactgtcgctacggtgacctggtggactacctg
cacagaaacaagcacacctttctgcaatattacgccgagaagaaccacgatgacagctgc
ttcatctcaggaggaagcactcctgtcagccagcggaaaggctacgtgtcatcaggcagt
gagagcgatggtggatacatggacatgactaaggatgagccctcagtctatgtgcccatg
caggagcagattgacaccatcaagtacgcagacatccaaccttccccgtacgagtcgtcc
taccagcaggacatttaccaggaacaaggtggcaacaggtttgacctggttctcggtgat
tctcctattttaacctttgatgatcttctgggcttcagctaccaagtcgctaaagggatg
gagtttctggcatccaagaattgcgtgcaccgtgacctcgctgccagaaatgtcttaatc
tgtgagggcaaacttgtaaagatctgtgacttcggcctggccagagacatcatgcatgac
tccaactacatctccaaaggcagcaccttcctgcccctgaagtggatggcaccagagagt
attttccataacctctacaccaccctgagtgatgtgtggtcctacggcattcttctgtgg
gagatcttcaccctgggaggaacaccgtaccctgatttacccatgaatgagttgttctac
agtgctctgaagagagggtaccgaatggccaaacctgcccacgcctctgatgaagtctat
gatatcatgaggaagtgttgggatgagaagtttgagaagaggcccgacttctcctttctg
gtgcacagtgttgggaacatgctgacggacagctataaaaagagatatcaccaagtccat
gagaacttcctgaagagcgaccatcctgccgtcacccgtaccaaaccccgactctcatca
ccttttccgatcaacacttcctcatccagtgctccctctcttgccgccctgtccttccct
ccgaccccacacaaccagaccctgagctccggaaacttccgacctcaggacgacacacag
gaggtcataacttcgtacaacgaatacatcattcccatccctgatcctaaaccagaggac
gtcttcactgacataccgtcggagagccccaccagctctgtggctctggaggaggaggag
gtggaggaggagagcgaggccatgtcccaggacacggcggacactcttccagaggaggag
gaggacaccagcgagagggacgctctgctgggttcgtcaggaacgccggacgtagaggac
agcttcctgtag

  All links  
Gene (17)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (18)   
   Pfam (18)   
All databases (38)   

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