KEGG   Dinoroseobacter shibae: Dshi_3110
Entry
Dshi_3110         CDS       T00612                                 
Name
(GenBank) cyclic nucleotide-binding protein
  KO
K10914  CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
Organism
dsh  Dinoroseobacter shibae
Pathway
dsh02020  Two-component system
dsh02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:dsh00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Dshi_3110
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Dshi_3110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:dsh03000]
    Dshi_3110
Transcription factors [BR:dsh03000]
 Prokaryotic type
  Helix-turn-helix
   CRP/FNR family
    Dshi_3110
SSDB
Motif
Pfam: cNMP_binding HTH_Crp_2 HTH_24 HTH_5 MarR_2 HTH_20 TrmB GntR HTH_36 HTH_DeoR Fe_dep_repress HTH_IclR HVO_A0261_N PAH HTH_17
Other DBs
NCBI-ProteinID: ABV94843
RoseoBase: Dshi_3110
UniProt: A8LL94
Position
complement(3276494..3277162)
AA seq 222 aa
MSDADLLQKHGWLAGRSQASQRRILSCGRPRHFAKDEALYHFGDSSRGVYGIVAGNVSVS
IPNDVGAAQTVYLATPGFWIGDAALFSDQTRLVTVIAETEVDALFLPKAQLDDLVREHPD
LLRDFYALSHLNLNVALSLIANLVTPNAAQRLAAFLLNVDERQVNPGDWIQVAQDRLASM
VALSTPTVQRHLRNLSAAGLVEIGYGRMRVIERAALRRFLME
NT seq 669 nt   +upstreamnt  +downstreamnt
ttgtctgacgcggatctgttgcagaaacatggctggctggccgggcggtcgcaggcctct
caacgccgcatcctgtcctgcgggcggccgcgccatttcgccaaggacgaggccctgtac
catttcggcgactcgtcgcggggcgtgtatggcatcgtcgcgggcaatgtcagcgtgtcg
attcccaacgacgtgggcgccgcgcagacggtttacctggcgacgcccgggttctggatc
ggggatgccgcgctcttttccgatcagacccggcttgtcaccgtgatcgcggagaccgag
gtcgatgcgctgtttctgcccaaggcgcaactcgatgacctggtgcgggagcatcccgac
ctgctgcgcgatttttatgcgctgagccatctgaacctgaatgtggcgctgtcgctgatc
gcgaatctcgtcacgcccaacgcggcacagcggcttgcggcgtttctgttgaacgtggac
gagcgccaggtgaacccgggggactggatacaggtggcgcaggatcggttggcgtcgatg
gtggcgttgtcgacgccgacggtgcaacggcatctcaggaatttgagcgctgccgggttg
gtcgagatcggatatgggcgtatgcgggtgatcgagcgcgcggcgttgcgccggtttttg
atggaatga

  All links  
Gene (12)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (28)   

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