KEGG   Hyperoodon ampullatus (northern bottlenose whale): 307058838
Entry
307058838         CDS       T11951                                 
Symbol
MBD4
Name
(RefSeq) methyl-CpG-binding domain protein 4
  KO
K10801  methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
hamp  Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:hamp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    307058838 (MBD4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hamp03036]
    307058838 (MBD4)
   03400 DNA repair and recombination proteins [BR:hamp03400]
    307058838 (MBD4)
Chromosome and associated proteins [BR:hamp03036]
 Eukaryotic type
  Heterochromatin formation proteins
   MBPs (metylated DNA binding proteins)
    307058838 (MBD4)
DNA repair and recombination proteins [BR:hamp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     307058838 (MBD4)
SSDB
Motif
Pfam: MBD HhH-GPD DUF8489
Other DBs
NCBI-GeneID: 307058838
NCBI-ProteinID: XP_079568660
Position
10:<5301551..5310364
AA seq 571 aa
MESPSLGDCGAAPSVIANQRLVPDRPCDLRQEDVALGSERVGEDEKQMVIKSSSECNPPL
QEPIASAQFGGSAMTECHKPVPCGWERVVKQRLSGKTAGRYDVYFISPQGLKFRSKSSLA
NYLHKSGETSLKPEDFDFTVPHKRNIKSGCKDQSMAALPSQLQNESSNSNRSLRTRSRWK
KDVVSLPSASLELQDSRELSNFTSIHWLLKEDDGVNDADSRKVRKSKRKVTVLKGIQIKK
SKTGCRRSLPDPVQSNRKRASVYNKAADAESEPLAQESQLERTCCVSDARARNKTLTVTS
EEERLGKEKSLCSGSDFEQTTSGIINKLRSTEEAGHNKKCEGTFLDSEEIRTKVEVGERK
EHLHIDISKGGSEMDNSSQTEKDSTSAKILQEDAIPQTQIEKRKTSLYFSSKYNKEVLSP
PRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWQFLEKYPSAE
VARTADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFC
VNEWKQVHPEDHKLNKYHDWLWENHKKLSLS
NT seq 1716 nt   +upstreamnt  +downstreamnt
atggagagtccgagcctgggggactgcggagctgccccctctgtcatcgccaaccagcgc
ctagtccccgaccggccgtgtgacctccggcaagaagacgttgctctgggatcagaaaga
gtgggagaagatgagaaacaaatggtgataaaaagcagcagtgagtgtaatcccccgcta
caagaacccattgcttctgctcaatttggtggtagcgcaatgacagagtgccataagcct
gtaccatgtggatgggaaagagttgtgaagcaaaggttatctgggaaaacagcaggaaga
tacgatgtatatttcatcagcccacagggactgaagttccgatccaaaagttcacttgct
aattatcttcacaaaagtggagagacttctcttaagccagaagattttgattttactgta
cctcataaaaggaacatcaagtcaggatgtaaagaccaaagcatggcagctctgccatcc
caactgcaaaacgaaagtagcaattcaaaccggagcctcaggacacgaagcaggtggaaa
aaagatgtggtttctttgccaagtgctagtttggaattgcaagatagcagagaactctct
aactttacttccattcattggcttttgaaagaagatgatggtgttaatgatgctgactcc
agaaaggttagaaagtccaaaagaaaggtgactgttctgaaagggattcaaattaagaaa
tctaaaacagggtgccggaggagtcttccagatcctgttcaaagtaatagaaaaagagca
tctgtgtataataaggcagcagatgctgaaagcgagcctcttgcacaagaaagtcagctt
gagagaacttgctgcgtctctgatgccagagcgagaaacaagaccctcactgttaccagc
gaagaggagaggcttggtaaagaaaaatcattgtgttcaggatcagattttgaacagacc
acttctggcatcataaacaaattacgttcaaccgaagaagcaggacacaacaagaagtgt
gagggtacctttttagactctgaggaaataagaaccaaagtagaagttggggaaaggaag
gagcatttgcatattgacatttcaaaaggtggctctgaaatggacaacagctcacaaacg
gagaaagactctacttctgcgaaaatacttcaagaagacgccatcccacagacacaaata
gaaaaaaggaaaacaagcctgtatttttccagcaaatataacaaagaagttcttagtccc
ccacgacgcaaggcctttaagaagtggacacctcctcggtcaccttttaatcttgtccaa
gaaacacttttccatgatccgtggaagctcctcattgcgactatattcctcaaccggacc
tcaggcaaaatggcaatccctgtgctttggcagtttctggagaagtatccttcagctgag
gtagcgagaactgcagactggagagatgtttcagaacttcttaaacctcttggtctctac
gatcttcgagcaaaaaccattatcaagttctcagatgaatatctgacaaagcagtggagg
tatccaattgagcttcacgggattggcaaatatggcaacgactcttaccgaattttttgt
gtcaatgagtggaagcaggtacaccctgaagaccacaagttaaataaatatcatgactgg
ctttgggaaaatcacaaaaaattaagtctatcttaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (7)   

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