KEGG   Hyphomonadaceae bacterium UKL13-1: AEM38_15395
Entry
AEM38_15395       CDS       T04338                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
hbc  Hyphomonadaceae bacterium UKL13-1
Pathway
hbc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hbc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AEM38_15395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hbc03019]
    AEM38_15395
   03016 Transfer RNA biogenesis [BR:hbc03016]
    AEM38_15395
Enzymes [BR:hbc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     AEM38_15395
Messenger RNA biogenesis [BR:hbc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AEM38_15395
Transfer RNA biogenesis [BR:hbc03016]
 Prokaryotic type
  tRNA degradation factors
   AEM38_15395
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH-I_KHDC4-BBP S1_RRP5 OB_RRP5_4th
Other DBs
NCBI-ProteinID: AMS31152
UniProt: A0A7U4QWQ8
Position
3319510..3321717
AA seq 735 aa
MFDIKTVSLEWGGRTLTLETGRMARQADGAVLATYGDTQVLATAVGARSAKPGIDFFPLT
VNYQEKFYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFAKGFKNETQVVITTLSH
DQENDPDIVALVASSAALVLSGLPFMGPISAARVGYINGEYVLNPTVDQLKESDMDLVVA
GTADAVMMVESEIYELSEEVVLGGVSFAHKQMQPVIDLIISLAEQAAKDPWDFQAEDHSA
ENKAVKDMIGADIDAAYRIADKGARQDAVGAAKKRAEAALVVSETNPDGMDGSLFKTVCK
EVESDIVRSAIVKEGRRIDGRPVDKVRAIVSEAGVLPRAHGSALFTRGETQALVVATLGT
ADDEQFIDSLEGTYKERFMLHYNFPPYSVGEVGRMGGAGRREIGHGKLAWRAMQAVLPTP
EQFPYTIRLVSEITESNGSSSMASVCGASLALMDAGAPISSPVAGVAMGLVLQDDGSFEV
LTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITEEIMKVALTRAHAGRMHILGEM
AKSLTGARGELNAFAPKIVSFMIPTDKIREVIGTGGKVIREIVEKTGAKISIEDDGSVKV
AASDQDKIDAAVKWVKSITDEAEVGKVYEGKVVKVMEFGAFVNFFGAKDGLVHISQLANR
KVATVGEIVKEGDTVKVKLMGFDDRGKTRLSMKVVDQATGEDIEEKLKAERAERGEAEEV
EQPRERSERPRRRRD
NT seq 2208 nt   +upstreamnt  +downstreamnt
atgtttgacataaagactgtttcgctcgaatggggcggacgtacgctgacactggaaact
ggccgcatggcgcgccaagccgatggggccgttttggccacctatggcgacacacaagtt
ctcgcgaccgctgttggtgcgcgttcggccaagccggggatcgatttcttcccgctgacc
gtgaattatcaagaaaaattctatgcagccggccgtatcccaggtggctattttaagcgc
gaaggccgtccaaccgaaaaggaaaccctggtttcccgcttgatcgaccgcccaatccgc
cccttgttcgccaaaggcttcaagaacgaaacccaggtcgtcatcaccaccttgtcgcat
gatcaggaaaatgatcccgatatcgtggccttggtggcttcttcggctgctttggttctg
tcgggtcttccgttcatgggcccaatctcggccgcacgcgttggctatatcaatggcgaa
tatgtgctgaacccaactgtcgatcagctgaaagaaagcgacatggatttggtggtcgca
gggaccgctgatgccgtgatgatggttgagtcggaaatctacgaattgtccgaagaagtg
gtgttgggcggggtttccttcgcacacaagcaaatgcagcctgtgatcgatctgatcatc
tcgctggcagagcaagccgcaaaagatccttgggacttccaagctgaagatcacagcgct
gaaaacaaggctgtgaaggacatgatcggcgcagacatcgatgccgcttaccgcatcgcc
gacaagggcgctcgccaagacgccgttggtgccgcgaagaagcgcgctgaagcagctttg
gttgtttctgaaacaaacccagacggcatggacggttcgctgttcaagacggtttgtaaa
gaagtcgaaagcgacatcgtgcgcagcgccatcgtgaaggaaggccgccgcatcgacggt
cgcccggtcgataaggtacgtgcgattgtgtcggaagctggcgttctgccacgtgcacat
ggctcggccttgttcacccgcggtgaaacccaagcactcgtggtcgccactttgggtact
gccgatgacgagcaattcatcgacagcctcgaaggcacctataaagagcgcttcatgctg
cattataacttccctccatattcggtgggcgaagtgggccgcatgggtggcgcaggtcgt
cgcgaaatcggtcacggcaagctggcctggcgcgcgatgcaagcggttctgccaaccccg
gagcaattcccatacaccatccgtttggtgtcggagatcactgaatccaacggctcgtcc
tcgatggcgtcggtttgcggtgcgtctttggctctgatggacgcaggcgcgccaatcagc
tcgccagtcgctggtgtggcgatgggcctcgtgctgcaagatgacggcagcttcgaagtt
ctgaccgacattctgggtgatgaagatcatctgggcgatatggactttaaggtcgctggt
accgaaaacggcatcacctcgcttcaaatggacatcaaggttgccggcatcaccgaggag
atcatgaaggtcgccctcacccgtgcccacgctggccgcatgcacattttgggcgaaatg
gccaagtctttgaccggtgcccgtggcgagcttaacgcctttgcgccaaagatcgtgtcc
ttcatgattccaaccgacaagatccgtgaagtgatcggcaccggtggtaaggtcatccgc
gaaatcgtggaaaagaccggcgcgaaaatctcgatcgaagatgatggcagcgtgaaagtt
gccgcatcggatcaagacaagatcgatgccgctgtgaagtgggtgaagagcatcacggac
gaagctgaagtcggcaaagtctatgaaggcaaagtcgtcaaagtcatggaatttggtgcc
tttgtgaacttctttggtgcgaaggacggcttggtccacatctcgcaactcgcaaaccgc
aaggtcgcgaccgttggcgaaatcgtcaaagaaggcgacaccgtgaaggtgaagctgatg
ggctttgatgatcgcggcaagacccgcttgtcgatgaaagtcgtcgaccaagccaccggc
gaagacatcgaagaaaagctgaaagcagagcgtgctgaacgtggtgaagctgaggaagtt
gaacaacctcgcgaacgcagcgaacgcccccgtcgccgtcgcgactaa

  All links  
Gene (14)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

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