KEGG   Ipomoea triloba (trilobed morning glory): 116005567
Entry
116005567         CDS       T07384                                 
Name
(RefSeq) transcription factor bHLH140
  KO
K10863  aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
Organism
itr  Ipomoea triloba (trilobed morning glory)
Pathway
itr03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:itr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    116005567
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:itr03400]
    116005567
Enzymes [BR:itr01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.1  In phosphorus-containing anhydrides
    3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase
     116005567
    3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase
     116005567
    3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase
     116005567
DNA repair and recombination proteins [BR:itr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     116005567
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     116005567
SSDB
Motif
Pfam: DcpS_C AAA_33 Macro zf-C2HE HIT AAA_18 AAA_16 AAA_29 nSTAND3 AAA G-alpha AAA_22 Viral_helicase1 AAA_17 CPT AAA_28 Zeta_toxin RNA_helicase nSTAND_NTPase5 6PF2K RsgA_GTPase ATP_bind_1
Other DBs
NCBI-GeneID: 116005567
NCBI-ProteinID: XP_031101653
Position
15:4869220..4872575
AA seq 760 aa
MEKMDIDRDTESGGENGAAEKKHSAAIMVVLVGAPGSGKSTFCDQVMRASSRPWVRVCQD
TIGNGKAGTKAQCLTSAATALKDGKSVFIDRCNLDIEQRADFMKLGDSKVEKHAVVLDLP
AKICISRSVKRTGHEGKLQGGKAAAVVNRMLQKKELPKLSEGFARITFCQDEKEVQAAID
TYCGLGPSDSLPSGCFGQKSSNAKVQLGIMKFLKKVDPVGDAGPVASTVQEHIPDQENKD
KNSNQGAEDGTSTSASASKDVKNGEDLDSSSTCAAGSSYNVPTLAFPSISTADFQFNLEK
ASDIIVEKVEEFMNKLGSARLALVDLSSGSKILSLVKTKAAKKNIDPNKFFTFVGDITQL
YSVGGLRCNVIANAANWRLKPGGGGTNAAIFNAAGPALESATKERIGSLAPGKAVVVPLP
SSSPLFSREGVTHVIHVLGPNMNPKRPNCLNNDYVKGCKILSEAYSSLFDGFASILRTHR
EFSKENSEDQFKSQDQQGRGAQNGDQKVKREAAFEPERSKKYKSFPKELGPNTKCPLDTS
NNPERKDEKHTTKTWGSWAQALYDIAMHPEKHKNDVLDTSQDVVVLNDMYPKSQKHLLVL
ARVEGLDRLADVSKEHLPLLKTMHAVGLKWAEEFLNENESLIFRLGYHSVPSMRQLHLHV
ISQDFNSKHLKNKKHWNSFNSLFFRDSVDVIEEVSQNGKATLNDDEKLLAMELRCHRCRS
AHPNIPRLKAHIGSCQAPFPSFLLQNVRLVCTPGKMQIGS
NT seq 2283 nt   +upstreamnt  +downstreamnt
atggaaaaaatggatattgatcgcgacactgaatccggaggagaaaatggagcagcagaa
aagaagcacagtgcagcaataatggtggtattggtgggtgcgccgggtagtggaaagtct
acgttctgcgatcaggtcatgcgcgcctcctctcgaccctgggttcgggtctgccaggat
acaattgggaatggcaaggcagggacaaaggcacaatgcctgacgagtgcagctactgca
ttgaaggatggtaaaagtgtatttatagacagatgcaacttggatatagaacagcgtgca
gactttatgaagcttggtgactcaaaggttgagaagcatgctgtggtgctcgatcttcct
gcaaagatttgtatatctcggtctgtaaaacgcactgggcatgaaggaaaattgcaaggt
gggaaagctgctgccgttgttaataggatgcttcaaaagaaagaattgcctaagttgagt
gaaggatttgcacggattacattttgtcaagatgaaaaagaagttcaagctgctattgat
acatattgtggacttggtccatcagattcacttccatcaggttgttttggtcagaagagt
tcaaatgccaaggttcaacttggtataatgaagttccttaaaaaagtagatccagtggga
gatgctggccctgtggcaagtactgttcaggagcatattcctgatcaagagaacaaagat
aaaaattccaaccaaggagcagaagatggtacttctacgtcagcttctgcctccaaggat
gtgaagaatggtgaagacctagatagtagctctacctgtgctgccggttcttcatacaat
gttcccaccttggcatttccttctatttctacagcagatttccagttcaatcttgagaag
gcatctgacatcattgttgagaaagtagaagaattcatgaacaaacttggaagtgctagg
cttgctctggtggatttgtcctctggatcaaaaatactttccctggtcaagacaaaagct
gcaaaaaagaacatagaccctaataaattctttacatttgttggtgatataactcagcta
tattctgttggaggattacgctgcaatgtaattgctaatgctgccaactggcgacttaaa
ccaggaggcggagggacaaatgctgctatatttaatgccgcaggtcctgccttggaaagt
gcaaccaaagaaagaattggatccctagcacctggaaaagctgttgtggttcctctccct
tcatcgtcgcccttgtttagtagggaaggtgtaacccatgtgatacatgttcttggacca
aatatgaatcccaagagaccaaattgtctaaacaatgactatgtcaagggctgcaagatt
ctttctgaagcctactcatcactttttgatggatttgcatcaatactgaggacccataga
gagttctccaaggaaaattctgaggatcaatttaaatcacaagatcaacagggcagaggt
gctcagaatggtgatcagaaggttaagagggaagctgcttttgaacctgagagaagcaaa
aaatataaaagctttccgaaagaacttggacccaacaccaagtgccctcttgatacaagc
aacaaccctgagagaaaagatgaaaagcatacaaccaaaacttggggatcatgggcacaa
gctctttatgacattgccatgcatcctgaaaagcataagaatgatgttttagacacatca
caggatgttgttgttctgaacgatatgtatccaaagtcacaaaagcacctgttggtgttg
gcacgagttgaaggtcttgatcgtctggcggatgtttccaaggagcatctcccattgctt
aagacaatgcatgcagttggactgaagtgggcagaagagtttctgaatgaaaatgaatcc
ttaatattccgtcttggataccattcggtcccctcaatgcgacaactgcaccttcatgtg
atcagccaggatttcaactcaaagcatctgaagaacaagaagcattggaactcattcaat
tccctcttcttccgggattcagttgatgtgatagaggaagtcagtcaaaatggaaaggct
accctgaatgatgatgaaaagttgctcgcaatggagttgcgatgccatagatgtcgtagt
gctcatcccaacattccccgcctgaaggcacatattggctcatgtcaagccccattccct
tctttcctgctccaaaatgttcgtttagtgtgcacaccaggtaagatgcaaataggttca
tga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (22)   
   Pfam (22)   
All databases (26)   

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