KEGG   Klebsiella pneumoniae 34618: LI86_00590
Entry
LI86_00590        CDS       T03747                                 
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
kpnu  Klebsiella pneumoniae 34618
Pathway
kpnu03030  DNA replication
kpnu03410  Base excision repair
kpnu03420  Nucleotide excision repair
kpnu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:kpnu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LI86_00590 (ligB)
   03410 Base excision repair
    LI86_00590 (ligB)
   03420 Nucleotide excision repair
    LI86_00590 (ligB)
   03430 Mismatch repair
    LI86_00590 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:kpnu03032]
    LI86_00590 (ligB)
   03400 DNA repair and recombination proteins [BR:kpnu03400]
    LI86_00590 (ligB)
Enzymes [BR:kpnu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LI86_00590 (ligB)
DNA replication proteins [BR:kpnu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LI86_00590 (ligB)
DNA repair and recombination proteins [BR:kpnu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LI86_00590 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LI86_00590 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     LI86_00590 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LI86_00590 (ligB)
SSDB
Motif
Pfam: DNA_ligase_OB DNA_ligase_aden HHH RNA_ligase DUF3701 Nlig-Ia
Other DBs
NCBI-ProteinID: AJB73781
UniProt: A0A2U0LPH5
Position
119078..120754
AA seq 558 aa
MRKGGWWLALGMFSASALATCPDWPPARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVY
DQLTLRLAQWRQCFPGATPEDDDLPPPTGDARHPVAHTGVRKLADEDSVARWMKNKSDLW
IQPKVDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALEKVMTGELADSVLQGE
LFLRRGGHVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLLT
QAGFKYSGQYTHPVSSIEQVAQWRQRWYRSPLPFVSDGVIVREGREPPGRVWSPGKGEWL
AAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKRVQRVNVGSVSRWQMLDIG
VGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALTCYFATPECSEQFLSRLIWL
SSKSALNVDGVGENLWRVIQQQNPMTHIFSWLALTVEQLQAVPGISAARGQHLWHQFDLV
RKRPFIRWVLAMGIPVPQGALAQLESENWHLLAAKSEAQWRTLPGVGEIRARQLVAFLHH
PDVVALAQWLSGQRIPGF
NT seq 1677 nt   +upstreamnt  +downstreamnt
atgcgtaaaggagggtggtggctggcgttagggatgttctctgccagcgcgctggcgacg
tgtccggactggccgccggccagaggaaggcaggagacatcacgccttcatcagcaaatt
gtcgcctggaaagaggcttactggcggcagggcgccagcggagtgagcgatgacgtttac
gaccagctcaccctgcgcctggcgcagtggcgacaatgctttccgggcgcgacgcctgag
gatgacgatctgcctccgcccaccggcgatgcgcgtcatccggtggcccataccggcgtg
cgcaagctggcggatgaggacagcgttgcccgctggatgaaaaataaatccgacctgtgg
atacagcctaaagtggacggcgtggcggtgactctcgtttatcgccaggggcgtctggtt
caggccattagccgcggcgatggtctgcgcggtgaggcatggaccgcccgagcccggcag
atcccagcgctggagaaagtgatgaccggtgaactggccgacagcgtactgcagggggag
ctgtttctgcgccggggcggccatgttcagcagcaggctggggggatgaacgcgcgggcg
aaagtcgccgggttgatgatgcgagccgacgcggcggcggcgctcagtcaactggacgtt
tttatctgggcctggccagacggcccgtcggatatgcgccgtcgacagcagctgctgacg
caggcggggtttaagtacagcgggcaatatacccacccggtgtcgagcatcgagcaggtg
gcgcagtggcgccagcgctggtatcgctcgccgctgcccttcgtcagcgacggtgtgatt
gtgcgcgaaggacgcgagccgccagggcgagtctggtcgcccggaaagggcgagtggctg
gctgcctggaaatatcctccggcatcgcgggtgatgcaggtacgggcgatccgtttcagt
accggccgcagcggcagactcaacgtggtggccgagcttgagccccagcggctggatgat
aaacgcgtgcagcgggttaacgttggctctgtgtcccgctggcagatgctggatattggg
gttggcgatcagctgcagatcagtctggcagggcagggtattcctcgggtcgacgccgtc
gtctggcggacggccgagcgccataaaccgacgccgccgccggcgaaatttaatgcgcta
acctgctatttcgccacccctgagtgcagcgaacagtttctttccaggctgatctggttg
tcatcaaagtccgccctgaatgtcgatggcgtgggggaaaatttatggcgcgtcattcag
cagcaaaacccgatgacgcatatcttttcctggctggcgcttaccgttgagcagctgcag
gcggtgccagggatttccgccgcccgcgggcagcacctctggcatcagtttgatcttgtt
cgcaaacgaccttttatccgctgggtgctggcgatggggatcccggtgccgcagggggcg
ctggcgcagctcgaaagcgagaactggcatttgctggcggcaaaaagtgaagcgcaatgg
cgcacgctgccgggcgtgggggagatcagagcccgccagctggtggctttcctgcaccat
ccggacgtggtggcgctggcgcaatggcttagcgggcagcgcatccccggattttaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (9)   

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