KEGG   Lacibacter sediminis: H4075_17350
Entry
H4075_17350       CDS       T06746                                 
Name
(GenBank) RecQ family ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
lacs  Lacibacter sediminis
Pathway
lacs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lacs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    H4075_17350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lacs03019]
    H4075_17350
   03400 DNA repair and recombination proteins [BR:lacs03400]
    H4075_17350
Enzymes [BR:lacs01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     H4075_17350
Messenger RNA biogenesis [BR:lacs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     H4075_17350
DNA repair and recombination proteins [BR:lacs03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      H4075_17350
SSDB
Motif
Pfam: DEAD Helicase_C WHD_RecQ_mid_bact RecQ_Zn_bind Helicase_C_2 Cas3-like_C_2
Other DBs
NCBI-ProteinID: QNA43824
UniProt: A0A7G5XEC1
Position
4081245..4083149
AA seq 634 aa
MQNLSSILQQYWGYSSFRPLQQEIIESVLSGKDTLALLPTGGGKSICYQVPALAKDGLCI
VISPLIALMKDQVEALHRKDIRAAAIYTGMPFPQVKDILQMAVNEKLKFLYVSPERLETN
LFLEYLPGMNIQLIAVDEAHCISQWGYDFRPSYLKIVNFRKELPGVPLLAVTASATPHVQ
DDICNKLQFRNHHIYKGSFLRPNVSFSVFRVESRINKILQILNNVQGCAIVYCKSRKMTQ
ETAQLLQLHHISADYYHAGLSNDERSKRQEAWLKNETRVIVCTNAFGMGIDKPDVRVVIH
HDMPDCLENYYQEAGRAGRDGQKSYAVLLHEEKDLHELKGLSAIRFPPVSEVKRVYQCLV
NYLQLPSGSGELQWIEFDLNDFIKTFKLNVYTAVYALKTLEHEGWINYAEQIFLPAKVVF
TASKQRLAEFEQQHPQLEPVMKGLLRTYGGIFDMESFISEKQLVTILKTDLDATKQSLYQ
LHQHGIINYSPQKEKPQLQFLENRPAVEDLFINPAHLLQRKEQFELRVNKMLDYITDSNT
CRSKMIGTYFGDAAIGNCGVCDTCLQKKGNDLSPDEFESIRSFLKDRAGNNGLVVKELLT
KMGSKQKDRVWKVIDHLIAEEKITLTKEGLMKFI
NT seq 1905 nt   +upstreamnt  +downstreamnt
atgcaaaatctctcttccatacttcaacaatactggggttactcttcctttcgtccgctt
caacaggaaataattgaatcggtgttaagtggaaaagatacccttgccttattaccaacc
ggtggcggcaaaagtatttgttaccaggtacctgcacttgcaaaagatggattatgcatt
gttatatcgccgctcattgcattaatgaaagaccaggtggaagcgcttcatcgaaaagat
atcagggccgcagcgatctataccggcatgcctttcccgcaagtgaaagatatattacaa
atggcagtgaatgagaaacttaaatttctgtatgtatcccctgagcgtttagaaacaaat
ctctttcttgaatatttaccgggaatgaatattcaactcattgcagttgatgaagcgcat
tgtatttcgcaatggggatatgattttcgtccgtcgtatttgaagattgtcaattttcga
aaagaattacccggtgttcctttgcttgccgtaacagcgtcagcaacaccacacgtgcag
gatgatatctgcaacaaattacaattccgcaatcatcatatttataaaggctcctttctt
cgaccgaatgtttcattcagtgtgtttcgtgttgaaagcagaatcaataaaatattgcag
attctgaataatgtgcagggctgtgccattgtttattgtaagagcaggaagatgacacag
gaaacagcacaactgctacaactgcatcatatttcagcagactattatcatgccggctta
tcgaatgatgaacgcagtaaacgacaggaagcatggttgaagaatgaaacaagagtaatt
gtatgcaccaatgcattcgggatgggtattgacaaacctgatgtgcgtgtggtaatccat
catgatatgcctgattgtttagagaactattaccaggaagctggccgtgcaggaagggat
ggacaaaaatcatacgctgtactgttgcatgaagaaaaagatctccatgaattaaaaggt
ttatcggcaattcgctttcctcccgtttcagaagtaaaaagagtgtaccaatgtttggta
aactatttacaattgccaagtggcagtggcgaattacaatggatagaatttgatctgaat
gattttatcaaaacattcaagctgaatgtttatacagccgtgtacgcattaaaaacatta
gaacacgaaggctggatcaattatgccgaacagatttttctacctgcaaaagttgtcttc
acagcaagtaaacagcgcctggctgagtttgaacaacagcatccacaactggagcctgtt
atgaaaggcctgttacgtacttacggcggcatctttgatatggaatcattcatatcagaa
aaacaattagtaacaatcctgaaaaccgatctcgatgcgaccaaacagtcattgtatcag
ttacatcaacatggtattatcaattacagtccgcagaaagagaaaccacagttacagttc
ttagaaaaccgtccggcagttgaagacctgttcattaaccctgcacacctcttgcaaagg
aaagagcagtttgaacttcgtgtcaacaaaatgctggactatataacagatagcaatact
tgcagaagtaaaatgatcggcacttattttggcgacgctgccattggtaattgcggagtg
tgtgatacttgtttgcagaaaaaaggaaacgatctttcaccggatgaatttgaaagcatc
cgttcttttttaaaagatagagcaggcaataacggtttagttgtaaaagaactcctgacg
aaaatgggcagtaaacaaaaagatcgtgtgtggaaagtaattgatcatttgatagcagaa
gaaaaaataactctaacaaaagaaggattaatgaagttcatataa

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (8)   

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