KEGG   Leopardus geoffroyi (Geoffroy's cat): 123609556
Entry
123609556         CDS       T10761                                 
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
lgf  Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lgf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123609556 (DHX16)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lgf03041]
    123609556 (DHX16)
Enzymes [BR:lgf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     123609556 (DHX16)
Spliceosome [BR:lgf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    123609556 (DHX16)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    123609556 (DHX16)
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C DEAD HA2_N AAA_22 AAA_19 AAA_30 SecA_DEAD Flavi_DEAD nSTAND3 Cas3-like_C_2 SRP54
Other DBs
NCBI-GeneID: 123609556
NCBI-ProteinID: XP_045356582
Position
B2:complement(29435768..29451529)
AA seq 1044 aa
MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTDTLDLSGPAR
DFALRLWNKVPRKAVVEKPARVAEREARALLEKNLSYKLLEDSEESSEETVGRAGSNVQK
KRKKRKHLRKKRQDEEEEEEQEVSEKEKRKTGGSKQLTEKSESEDEWERTERERLQDLEE
RDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAK
REREKLEDLEAELADEEFLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATNR
YHMPEETRGQPARAMDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQKPKYQLVL
EEEETIEFVRATQLQGDEEPSGPPPPTQAQQKESIQAVRRSLPVFPFREELLAAIANHQV
LIIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEV
GYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIK
DVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVV
SVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQA
RIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKA
SANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMH
FDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCS
EEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQW
CYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRS
GYRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYK
AKELEDPHSKKMPKKIGKTREELG
NT seq 3135 nt   +upstreamnt  +downstreamnt
atggcgacgccagctgggctggagcgctgggtgcaggacgagctgcactcggtgttgggg
ttgagcgaacggcatgtagcccaatttctgatcggtaccgcgcagcgctgtgcctcggcc
gaggagttcgtgcagcgcctccgagacaccgatactctggacctcagcgggccggcccgg
gacttcgccctgagactctggaacaaggtaccacggaaggcagtggtagaaaagccagct
cgagtggcagagcgagaggcccgagccctgctagagaagaacctatcctataagttgctg
gaagacagtgaggagagcagtgaggagaccgtaggtagagctgggagcaatgtccagaag
aagcgtaaaaaacggaaacacctcaggaagaaacgtcaggatgaagaggaagaagaggag
caagaggtttctgagaaggagaagagaaagacaggaggaagtaaacagctgactgagaag
tcagagtcggaggatgagtgggagaggactgagcgagagcgccttcaggacctggaggaa
cgtgatgcctttgctgagagggttcggcagcgggacaaggatcggactcgaaatgtcctg
gagcggtcagacaagaaggcttatgaagaggctcagaagcgcctcaagatggctgaggaa
gaccggaaagccatggtccctgagctgcggaagaaatcccgccgagagtacttggctaag
agggaacgagagaaacttgaggatctggaggctgagctggctgatgaggagttccttttt
ggggatgtggagctgagccgacatgagcggcgggagctcaaatacaagcggcgagtgcgg
gacttggcccgagagtaccgggctgctggggagcaggagaagctggaggccaccaatcgt
taccatatgcctgaggagacccgaggacagccagcacgagctatggatctagtggaggag
gaatcaggtgcccctggggaggagcagcggcgctgggaggaggcccggctgggggcagcg
tccctgaaatttggggcccgagatgctgcctcccagaagcccaagtatcagctggtgctg
gaggaagaggagaccatcgagtttgtccgggccactcagctccagggtgacgaggagcca
tcaggcccaccacctccaacccaggctcagcagaaagagtccatccaggctgtccgccgc
agcctcccagtgttcccattccgtgaggagctcctggctgctattgctaatcatcaggtc
ctcatcatcgagggtgagacaggctccgggaagaccacccagatcccgcagtatctcttt
gaggagggttacacaaagaagggaatgaagattgcctgcacccagccccggagagtggca
gccatgagtgtggctgcccgagtggcccgggagatgggtgtgaagcttgggaatgaggtt
ggctatagcatccgctttgaggactgcacgtcggagcgaactgtcctccgctacatgaca
gatgggatgctcctccgggagttcctctctgaacctgaccttgcaagttacagcgtggtg
atggtagatgaggctcatgaacggaccctacacacagacattctctttgggttgatcaag
gatgttgctcgcttccggcctgagctgaaggtcttggtggcttcagccacactggacact
gcccgtttttccaccttctttgatgacgcccctgtcttccgaatccctggacgcaggttt
ccagttgacatcttctataccaaggctccagaggctgactacctggaagcttgtgtggtg
tctgtgctgcagatccatgtgacccagcctcccggggatatcctggtgttcctgacagga
caggaggagattgaggccgcctgtgagatgctccaggatcgctgccgccgcctgggctcc
aaaatccgggagctcttggtattacccatttatgccaacctaccttctgacatgcaagct
cgaatcttccagcccacaccccctggggcacgaaaggtggttgtggcaacaaacatcgct
gagacgtcactcaccattgagggcatcatttatgtgctggatccagggttctgtaagcag
aagagctacaaccctcgcacaggcatggaatccctcactgtcacaccctgcagcaaggcc
tcagccaatcaacgagctggtcgggcgggtcgggtggctgcagggaagtgcttccgcctg
tataccgcctgggcctatcagcatgagctggaggaaaccactgtgccagagatccagagg
accagcctgggcaatgttgtgttgctgctcaagagcttagggatccatgacctaatgcac
tttgatttcctggaccctccaccatatgagaccctgctgctggccttggagcagttgtat
gctctgggagccctcaaccaccttggggagctcaccacgtctggtcgaaagatggcagag
ctaccggtggatcccatgctatctaaaatgatcttggcctctgaaaagtatagctgttca
gaagagatcctgacagtggctgccatgctctctgtcaacaattccatcttctacagaccc
aaggacaaggtcgtccatgccgacaatgcccgtgtcaactttttcctccctggtggggac
cacctggttctgctaaacgtttatacacagtgggctgagagtggttactcttcccagtgg
tgctatgaaaactttgtacagttcagatcaatgcgccgagccagggatgtgcgggaacag
ctggaggggctcttggaacgagtggaagttggtctcagctcctgccaaggggactatatt
cgtgtacgcaaggccatcacagctggttacttttaccacacggcgcgactgactcgtagt
ggctatcgcacagtcaaacaacagcagacagtgttcattcaccccaactcctctctcttt
gaggaacagccacgctggctgctctaccatgaacttgtcttgaccaccaaggaattcatg
agacaggtattagagattgaaagcagttggcttctggaggtagctccccactattataag
gccaaggagctagaagatccccattctaagaaaatgccaaaaaaaataggcaagacacga
gaagagctagggtaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (13)   
   Pfam (13)   
All databases (19)   

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