KEGG   Listeria newyorkensis: OTR81_13165
Entry
OTR81_13165       CDS       T08875                                 
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
lnw  Listeria newyorkensis
Pathway
lnw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lnw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OTR81_13165 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lnw03019]
    OTR81_13165 (pnp)
   03016 Transfer RNA biogenesis [BR:lnw03016]
    OTR81_13165 (pnp)
Enzymes [BR:lnw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     OTR81_13165 (pnp)
Messenger RNA biogenesis [BR:lnw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     OTR81_13165 (pnp)
Transfer RNA biogenesis [BR:lnw03016]
 Prokaryotic type
  tRNA degradation factors
   OTR81_13165 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 OB_RRP5_4th KH-I_KHDC4-BBP SPATA25 RICTOR_M KH_2
Other DBs
NCBI-ProteinID: WAO21202
Position
3013102..3015273
AA seq 723 aa
MTEKQVFKSTWAGKELAIEVGQMAKQANGAALIRYGDTVVLTAAVGSRKPRPGDFFPLTV
NYEEKMYAVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGYRNDVQITSTVLSVD
QDCSPEMAAMLGSSISLCISDIPFEGPIAGVDVGRVNGEYIINPTIEQQELSDISLTVAG
TKEAINMVEAGAKEVPEEAMLEAIMFGHEEIKRLIAFQEEIVAAVGKAKMEIELFVPNAE
LVAEVTARAEADMKIAIKTEEKLAREENINVLKEAVVAEYEAKELEDAAEVLPEVKHILE
MLEKNEMRRLISQDKIRPDGRKVDEIRPLSSEVGILPRVHGSGLFTRGQTQALSVCTLAP
LREHQIIDGLGLEDSKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQQVIPSE
EDFPYTIRLVSEVLESNGSSSQASICGSTLAMMDAGVPIKAPVAGIAMGLVKLGDDYTIL
SDIQGMEDHFGDMDFKVAGTRDGITALQMDIKIDGLSRQILEEALTQAKAGRLHILEHLE
ATINTPRETLSEYAPKIVTINIKPDKIKDVIGPGGKQINQIIDETNVKIDIEQDGTVFIA
SQDDAMIEKAKAMIEEIVREVQVGEIYDGKVRRIEKFGAFVELFKGKDGLIHISELAHER
VGKVEDILKMGDIVKVKVTEIDDHGRVNVSRKALIEKKEGDTEQPNRAPRKEGYKKPYTN
DKK
NT seq 2172 nt   +upstreamnt  +downstreamnt
atgactgaaaaacaagtatttaaatccacatgggcaggcaaagaactagcaatcgaagtt
ggtcaaatggcaaaacaagcaaacggtgcagcgcttattcgctacggcgataccgttgtt
ttaacagcagctgttggttcgcgtaaaccaagaccgggtgactttttcccgttgactgta
aattatgaagaaaaaatgtacgctgttggtaaagttccaggcggcttcttaaaacgcgaa
ggtcgtccaagtgatcgcgcaacattaacggcacgtctgattgaccgtccaatccgtccg
ctttttgcagaagggtatcgtaacgatgttcaaatcacatctacagtgcttagcgtggat
caagactgctcaccagaaatggctgcaatgcttggttcatcgatttcactttgcatctcg
gatattccttttgaagggccgattgcgggtgtagatgttggtcgtgtgaacggggaatac
atcattaatccaaccatcgagcaacaagaattaagcgatattagcttgacggttgctggg
acaaaagaagccatcaacatggtagaagcaggagcgaaagaagtgcctgaagaagcgatg
ttagaagctatcatgttcggtcacgaagaaatcaaacgcttaatcgcgttccaagaagaa
atcgttgccgcagttggtaaagcgaaaatggaaatcgaattattcgtgccaaacgcagag
cttgttgcagaagtaacggctcgcgcagaagcagatatgaaaatcgcgattaaaaccgaa
gaaaaattagcgcgcgaagaaaacattaacgtgttaaaagaggcggttgtcgcagaatat
gaagcaaaagaattagaagacgcagcagaagttttgccagaagtaaaacatattttagaa
atgcttgaaaaaaatgaaatgcgtcgcttgatttcacaagataaaatccgtccagatggt
cgtaaggtagacgaaattcgtccgctatcatctgaggttggtattttgccacgcgtccat
ggttcaggactattcacacgtggacaaacgcaagcacttagcgtatgtacattagcgcca
cttcgcgagcaccaaatcattgatgggcttggtctagaagattccaaacgcttcatgcat
cattacaacttcccgcagttcagtgttggagaaacaggacctcgtcgtgcaccaggtcgt
cgtgaaatcggtcacggagcacttggtgaacgcgcgttacaacaagttattccaagtgaa
gaggatttcccatacacgattcgccttgtatctgaggttttagagtcaaacggttcaagt
tcacaagcaagtatttgtggatcgacgcttgcaatgatggatgcaggtgtgccaattaaa
gcgccggttgctggaatcgcgatgggacttgtcaaacttggcgatgactacacaattctt
tctgatattcaaggtatggaagatcatttcggcgacatggatttcaaagtagctggaaca
cgtgacggtattactgccttgcaaatggatatcaaaatcgatggtcttagccgccaaatt
ttagaagaagccttgacacaagcgaaagcaggccgtctgcacattctagaacacctagaa
gcgaccatcaacacacctcgcgaaaccttgtcagaatatgcacctaagatcgttacaatc
aatatcaaacctgataaaatcaaggacgttatcggacccggcggtaaacaaattaaccaa
atcatcgacgaaacgaatgttaaaattgatatcgaacaagacggtacagttttcatcgcg
tctcaagatgatgccatgatcgaaaaagcgaaagcaatgattgaagaaatcgtccgcgaa
gtacaagttggcgaaatctatgatggtaaagttcgtcgtatcgagaaattcggagctttt
gttgaattattcaaaggcaaagatggcttgattcatatttctgaactagcgcacgaacgc
gttggtaaagtggaagacatcctgaaaatgggtgatatcgtgaaagtcaaagtaacagaa
atagacgatcacggtcgtgtaaacgtatctcgtaaagctttgattgagaaaaaagaaggc
gatacagaacaaccgaaccgcgcaccacgtaaagaaggctacaaaaaaccttacaccaac
gataaaaaataa

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (10)   
   Pfam (10)   
All databases (11)   

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