KEGG   Lepisosteus oculatus (spotted gar): 102697036
Entry
102697036         CDS       T07349                                 
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
loc  Lepisosteus oculatus (spotted gar)
Pathway
loc04010  MAPK signaling pathway
loc04020  Calcium signaling pathway
loc04510  Focal adhesion
loc04518  Integrin signaling
loc04519  Cadherin signaling
loc04540  Gap junction
loc04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:loc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    102697036 (pdgfrb)
   04020 Calcium signaling pathway
    102697036 (pdgfrb)
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    102697036 (pdgfrb)
   04519 Cadherin signaling
    102697036 (pdgfrb)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102697036 (pdgfrb)
   04540 Gap junction
    102697036 (pdgfrb)
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    102697036 (pdgfrb)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:loc01001]
    102697036 (pdgfrb)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:loc04090]
    102697036 (pdgfrb)
Enzymes [BR:loc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     102697036 (pdgfrb)
Protein kinases [BR:loc01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   102697036 (pdgfrb)
CD molecules [BR:loc04090]
 Proteins
  102697036 (pdgfrb)
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Ig_PDGFR_d4 Pkinase Ig_3 I-set ig Ig_2 VEGFR1-3_N_Ig-like Ig_VEGFR-1-like_5th Ig_4 V-set Ig_5 Zwei_Ig_N VEGFR-1-like_Ig-like Adeno_E3_CR1
Other DBs
NCBI-GeneID: 102697036
NCBI-ProteinID: XP_015205449
Ensembl: ENSLOCG00000011097
UniProt: W5MZ28
Position
LG6:complement(30910128..30948402)
AA seq 1079 aa
MKWGWMTDFNLAAFVTALLQLCQGGQGLKISPSGPELVLKQNSDITLTCSGSSEVIWKHN
DKQIHSTVKNGISSSNLTLQNVTWRQTGLYTCSESPSAFKEESIYIYVPDPDVWFLPSDL
NLVMKVGEEGTIPCFVTNPQINVTLYEKASQIPISGVYNPQEGFKANLGDNSYVCKGTLN
GEERESLAFHVHSLKVPDMIEVFINATKTELKKGEPLIVNCTVRGVELAYFTWDYPRKAA
NQFIEPITDIISDLGMEMRSILNISNATLEDSGRYHCNVSENVGGTEKDDEIIITVHDRG
FVKLNSTISNNLFGKLHESIELTVQIEAYPKPQVRWLKDNISLTGDLEEVSIDFRKMEET
RYETTLTLVRIRTEQRGHYTVHVSNEDGAGELTFELHVNVTPHIVDLSDYIPVGGGHAVV
CKAEGVPTPRIQWYSCDNIHKCTNRSDLWTLIATGSDNVSIQTNVSYNETRGVYLTKSRI
ALQDLQKIISLRCEARSAMGRKTRDVKLLSHLPHVLYSQVAVLATVLALVVIFIISIIVL
IAVWKKKPRYEIRWKVIESVSSDGHEYIYVDPMHLPYDSAWEVPRDSLVLGRTLGSGAFG
RVVEGTAYGLGHSQSTTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACT
KRGPIYLITEYCRYGDLVDYLHRNKHTFLQYYADKTRRDAEMCRNSTIESQGKSYVTLTS
ESDGGYMDMSKDDSTEYVPMQELTDNIKYADIEPSVYETPYQQDNYQTQGQERIDSAPVI
NESPILSYTDLVGFSYQVAKGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIM
HDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMSEL
FYSALKRGYRMSRPTHASEEVYEIMKKCWEEKYEKRPEFSYLVHAMGNMLSDSYKKRYNQ
VNESFFKSDHPAVAHTKPRMPGSQVSPITSPGTRQDAEGEEALASDNEYIIPIPDPKPEE
ACEESNDTEAENPPSTENLKEVSPASGSLETSITDPEEMGSSSSPEEEKTEPEVEESFL
NT seq 3240 nt   +upstreamnt  +downstreamnt
atgaagtggggttggatgacagacttcaatttagcagcttttgtcacagctctcctacag
ctgtgtcaaggtggtcaaggccttaaaatttcaccaagtggcccagagttagtcttgaag
cagaactctgacatcactctgacgtgctcaggatcaagtgaggtgatctggaaacacaat
gacaaacaaattcattctacagtaaagaatgggatttcatctagtaatcttacactacaa
aatgtaacatggagacaaactggactatatacatgttctgaatccccatcagccttcaag
gaggaaagcatctacatttatgtaccagatccagatgtgtggttcctaccatctgacctt
aaccttgtgatgaaggtaggggaggaaggcaccattccctgctttgttaccaacccccaa
ataaatgtcaccttatatgagaaggcaagtcaaattccaatcagtggagtttacaaccct
caggagggcttcaaggcaaatttgggtgacaattcctacgtctgcaagggtacattgaat
ggtgaagagagggaatcccttgcatttcatgtgcacagtcttaaggtaccagacatgata
gaggtctttatcaatgccacaaagacagagttaaagaaaggtgaaccactaattgtgaac
tgcacagtacgaggagtggagttagcttacttcacctgggactacccacgcaaagctgcg
aatcaatttatagaaccaataaccgacataatttctgatctggggatggaaatgcgatcc
attctgaacatatcgaatgctactcttgaggattcaggaaggtaccattgcaatgtcagt
gagaacgtaggggggacagagaaagatgatgagatcataattacggttcacgaccggggg
tttgtaaagctgaattccaccatcagtaacaacctatttggaaaactacatgaaagcatt
gagctcactgtgcaaatagaagcctatcccaaacctcaagtgaggtggttgaaggataac
atcagcctgacaggagacttagaagaagtatctatcgacttcagaaaaatggaagagacc
agatatgagaccactttaactttggtacgtattagaacggagcaacgtggacattatact
gttcacgtgtctaatgaagatggtgcaggggagctaacctttgaactccatgtgaatgtg
acccctcatattgtggacctctctgactacatcccagtaggaggaggacatgcagtggtc
tgtaaggctgaaggtgtgccaaccccaaggatccaatggtacagctgcgacaacatccac
aaatgcaccaacagaagtgatctgtggacccttatcgctacaggctctgataatgtcagc
atacagacaaatgtgagctataatgaaacccgtggtgtttacctgaccaagagcaggatc
gcccttcaggacctgcagaagatcatttctttgcgctgtgaggccaggagcgcaatgggg
aggaaaacgcgcgatgtcaagctgctttctcatctgcctcatgtgctctattcccaggtg
gcagttttagctacggtcttagctcttgtggtaatatttataatttccatcattgtcctg
atagcagtgtggaaaaagaaacctcgctatgaaatccgttggaaggtgattgagtcagtc
agctcggatggccatgaatacatctatgtagacccaatgcacctcccttatgactcagcc
tgggaggtaccaagagacagccttgtcttagggcgtacattgggttctggagcatttggc
agggttgtagaaggaacagcctatggccttggtcattcccaatccaccactaaagtggca
gtaaaaatgctgaaatcaacagcaaggagaagtgagactcaggcgttgatgtcggagctg
aaaataatgagtcatttaggtcctcatctcaatattgtgaatctgctaggagcctgcaca
aaaagaggtcctatctatctaattacagagtattgccgctatggagacctcgtagactac
ctccacagaaataaacacaccttcctgcagtactatgcagataaaactaggagagatgct
gagatgtgtagaaatagcacaatcgagagtcaaggaaaaagctacgtaacattaaccagt
gagagtgatggaggatatatggacatgagcaaggatgactctacagagtatgtacctatg
caggaactgacagacaacatcaaatatgcagatattgaaccatctgtgtatgaaacacct
taccagcaagacaattaccagacacaaggtcaagagaggattgacagtgccccagtgatc
aatgagtcacctattctgagctatacagaccttgtggggttcagttatcaggtggctaaa
ggaatggacttccttgcatctaagaattgtgttcatcgcgacttggcagcaaggaacgtc
ttgatttgtgaggggaaactggtgaaaatctgtgattttggattggcacgagacattatg
cacgactccaactacatctctaaaggcagcactttcctgcctttaaaatggatggcacca
gagagcatttttcacaatctctacaccacactgagcgacgtctggtcttatggaatatta
ctgtgggaaatcttcactctggggggaaccccatatcctgacctccctatgagtgagctc
ttttacagcgccctcaaacgaggctacagaatgtccagacctactcatgcatctgaagaa
gtttacgaaattatgaaaaaatgctgggaggaaaaatatgaaaaaagaccagagttctcg
tatttggttcacgccatggggaacatgctgagcgacagctacaagaagaggtataaccag
gtgaatgagagcttcttcaagagtgatcaccctgctgttgcgcacacaaagccgagaatg
ccaggcagccaggtgtcgcctatcacctcgccggggacaaggcaagacgctgaaggcgag
gaagccctggcctctgacaatgagtacatcatccccatcccggaccccaaaccagaagag
gcatgtgaagaaagcaatgacacagaggcagaaaatcccccaagcactgaaaaccttaaa
gaggtcagtccagcttctggttccttagaaacatccatcacagatccagaagaaatgggc
tccagttcatctccagaggaggaaaaaacagagccagaagtagaggaaagtttcctgtaa

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (15)   
   Pfam (15)   
All databases (23)   

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