Methylocapsa sp. D3K7: QEV83_06200 Help Entry QEV83_06200       CDS       T08996                                  Symbol ligD Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism medk  Methylocapsa sp. D3K7 Pathway medk03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:medk00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     QEV83_06200 (ligD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:medk03400]     QEV83_06200 (ligD) Enzymes [BR:medk01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      QEV83_06200 (ligD) DNA repair and recombination proteins [BR:medk03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      QEV83_06200 (ligD) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase Motif Other DBs NCBI-ProteinID:  WGJ15844 Position 1370490..1373114 Genome browser AA seq 874 aa AA seqDB search MAKTLTVYRSKRDFTKTPEPDSSGKVAPSATRRYVIQKHAARRLHYDLRLELDGVFKSWA ITRGPSLDPRDKRLAVEVEDHPLEYGDFEGIIPKGQYGGGTVQLWDRGVWTPEGRDSPDA TLEKGELKFTLDGTRLHGSWVLVRIKNDRKARRHANWLLIKHRDNAAQDGDGDALLAEDR SVASGRSMEMIAAGKGKRPMPFMTREDTKLAANAVWDSTGGASDSKRSGRIASNKLRRSV SLVMPDFVAPQLCTPVERPPDGAGWVHEIKFDGYRMQLRVDGGKANLKTRKGLDWSAKFA AIANAACNLPDAMIDGEIVALDTSGVPDFAALQAALSEGRTDDLMFFAFDLMFDANGDLR KRPLSERKAKLRDLLSDLGNDGVIRFTQHFESGGEAILRSACRLSLEGIVSKKLDASYHS GRGRNWLKAKCRAGHEVVIGGWTTTNERLRSLLAGVYRGDHLVYIGRIGTGYSAAKIKTL LPRLQAVAANTSPFTGIGAPRKEDNIHWTTPELVAEIEFTGWTGDGMVRQAAFKGLREDK PAEDVTAEKPAKASHAKLPQPLVPVTPARINAAKKPLVMGVMLSNPGKELWPDAGDGSPV SKLDLANYYEAVGSWMLGHLQGRPCSIIRAPDGISGSQFFQRHAMPGTSNLLELVTVSGD RKPYLEVDRVEGLAALAQIAALELHPWNCQPQQPDVPGRLVFDLDPGPDVAFSTVVAAAR DMREQLDELGLVSFCKTTGGKGLHVVTPLALSKKSKLTWPVAKDFAHQICLRLAHENPQR YVVNMAKKLRTGRIFLDYLRNDRTATAVAPLSPRARPGALVSMPLTWTQVKSDLAPQRFT LRTAPALIRRSKAWADYDESRQPLEDAIKRLGKT NT seq 2625 nt NT seq  +upstreamnt  +downstreamnt atggccaaaactctaacggtctatcgttcgaaacgggatttcaccaaaacgccggagccg gacagttctgggaaggtggcaccgtcggccacacgccgctacgtcatccaaaagcatgcc gcccggcgcctccactatgatctgcgccttgagcttgatggcgttttcaaatcctgggca atcacccgtggcccatcgcttgatccccgtgacaaacgactcgccgtcgaggtggaagat catcctctcgaatatggcgactttgaaggcataattccgaaaggacaatatggcggcggc accgtgcaactctgggaccgcggcgtctggacgccggaaggacgcgactcgccagacgct actttggagaagggcgagttgaagttcacgctcgatgggacgcggctgcatggcagttgg gttctggttcggattaagaatgatcgtaaagcgaggcggcacgcaaactggcttctgatc aaacatcgcgacaatgcggcgcaagacggcgacggcgatgctctgcttgcggaggaccgt tccgtcgcctcggggcggagcatggaaatgatcgctgctggaaaaggcaagcggcctatg ccgttcatgacccgcgaggatacaaagctggcagcgaacgccgtctgggattcgaccgga ggcgccagcgatagcaagagaagcggccgcatcgcatcgaacaagctccgccgctccgta tccctcgtgatgccggatttcgtggcaccgcaactttgcacgccagtcgaacgtcccccg gatggggctggctgggtgcacgagatcaagtttgatggataccgcatgcagctgcgggtg gacggcggcaaggccaatctcaagacccgtaaaggtctcgattggtcggcgaagtttgcc gcgattgcaaatgcggcatgcaatcttcccgacgcgatgatcgacggtgagatcgtcgca ctcgatacgagtggggtgcccgatttcgccgcgcttcaggccgccttgtcggagggacga acggacgatctgatgttttttgccttcgaccttatgttcgatgcgaatggcgacttgcgc aaacgcccgctctctgagcgcaaagcgaaattgcgggatttgctatcggacctcggcaac gatggcgtgattcgctttacccaacatttcgagagcggcggcgaggcgatcttgcgttcc gcatgccgtttatctttggaaggcatcgtatcgaagaaactcgacgcatcctaccactcg ggacgcggacgcaactggctgaaagccaaatgccgggcgggacatgaggttgtaatcggc ggatggacgacgacgaatgaaagattacgatctttgctcgccggcgtttatcggggcgat cacctcgtttatattggccgcattggaacgggctacagcgccgcgaaaataaagactctc ctgccccgcctgcaagctgttgcggcaaacacatcgccattcacgggcataggggcgccg cgcaaggaggacaatatacattggacgacgccagaactcgtcgcggagatcgaatttacc ggctggactggcgatggcatggtacggcaagccgccttcaagggcttgcgcgaggataaa cccgcggaagatgtcacagccgagaagccggccaaagcgagccatgccaagctgccgcag cccttagttcctgtgacaccagcgcggatcaatgctgcaaagaagccactggttatgggc gtcatgctgtccaatcccggcaaggagctttggcccgacgcaggcgatgggtcgccggtt tccaagctcgatctcgcgaattactatgaggcggttggaagctggatgctcggtcatctt caggggcgcccatgttcgatcatccgcgcgccggacggcatctccggatcgcagttcttt caacgtcatgctatgccgggcacatcgaatcttctcgaactcgtcacggtctctggcgac cgcaaaccttatcttgaagttgatcgggtcgaaggcttggcggcactggcgcaaatcgcc gctctcgaactgcatccctggaactgccaaccacagcagcccgacgtcccaggccggctc gtgtttgatctcgatcctgggccagatgtcgccttttcgaccgtcgtcgcggcggcccgt gacatgcgggagcaattagatgagcttggtcttgtcagcttttgcaaaactacaggaggc aaggggcttcatgtcgtcacgccgctggccctttcaaagaaaagcaagctgacctggcca gtggctaaggatttcgcgcatcaaatatgcttacggctggcgcacgaaaatccgcagcgt tacgtcgtgaacatggcaaagaagctgcgcaccggccgcatttttcttgattacctccgt aatgatcgcacggcgacggcagtggcgcccttatcaccgcgcgcccggcctggggcgctc gtttcgatgccgctgacgtggacacaggtgaagtcagacctggccccgcagcgatttacc ctccgaacggcccccgctctgatccggaggagtaaggcatgggcggattatgacgaaagc cggcagccgctcgaagatgcgatcaaacgactcggcaagacatga

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