KEGG   Manduca sexta (tobacco hornworm): 115444207
Entry
115444207         CDS       T07401                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
msex  Manduca sexta (tobacco hornworm)
Pathway
msex03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msex00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115444207
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:msex03041]
    115444207
Spliceosome [BR:msex03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    115444207
 Complex C
   U5 SnRNP specific factors
    115444207
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st NBCH_WD40 WD40_RFWD3 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_SPT8 WDR90_beta-prop_4th eIF2A Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd WD_LRWD1 Beta-prop_RIG_1st Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_Nup120_160 Cytochrom_D1
Other DBs
NCBI-GeneID: 115444207
NCBI-ProteinID: XP_030025749
Position
10:complement(13153132..13159428)
AA seq 349 aa
MPEMEIKRKADDLAVVPSKRTRHEISVIGTREKAVVTSSVPRTSNLYAPIMLLEGHQGEI
FTAKFHPEGKHLASAGFDRQIYLWNVYGQCENVMVMKGHTGAVMELCFSPDGSHLYTCAT
DTTVAVWDVPTGTRIKKLKGHASFVNSVSGARRGPELLVSASDDNTIKLWDARKRNPIAS
FDNSYPVTAVLFNDTAEKIISAGLDNIIKVWDIRNNQISYKVKGHTDTVTGLALSYDGSY
LLSNSMDNTLRIWDVRPFAPSERCVKLMSGHQHNFEKNLLRCAWSADGSKVAAGSSDRFV
YIWDTTSRRVVYKLPGHNGSVNDVDFHRTEPIILSASSDKQIYLGEIEN
NT seq 1050 nt   +upstreamnt  +downstreamnt
atgccagaaatggagataaaaaggaaagctgacgacttagctgtcgttccaagcaagagg
actcgccacgagatttctgttataggcactagagaaaaagctgtagtgacttcgtcggtc
ccacgaacatcgaacctttatgcaccaataatgttgttggaagggcatcaaggggagata
tttacggcaaaatttcaccccgaaggcaaacacttggcgtctgcagggtttgatagacaa
atttacctctggaatgtatacggtcagtgtgagaatgtgatggtgatgaagggccacacg
ggagcagtaatggagctctgtttctcaccggacggctctcatttgtacacttgtgctaca
gacactactgttgcagtgtgggatgtgcccactggcacacggataaagaaattaaaagga
catgccagctttgttaactctgtgtcaggagcaaggagaggtccagaactacttgtttca
gcatcagatgataacacaataaaactttgggatgcaagaaaaaggaaccctatagcatca
tttgacaattcctatccagtcacagctgttttgttcaacgatacagctgagaaaattata
tcggcaggcttagataacattattaaagtgtgggatataagaaataaccagatttcttac
aaagttaaaggacatactgataccgtgacaggattggcactatcatatgatggctcatat
ctcctatccaattccatggacaatacattaagaatatgggacgtaagaccttttgcgcct
tcagagagatgtgtaaaacttatgtcaggccatcaacacaactttgagaaaaacctgctt
cggtgtgcatggtcagcagatggctctaaggtggcagccggttcttctgatagatttgtg
tatatttgggacaccacatcgagaagagtggtgtacaagctacccggccacaatggctct
gtgaatgatgttgatttccaccgcactgaacccattatactctctgcttctagtgataaa
cagatatatctaggggagattgaaaattaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (37)   
   Pfam (37)   
All databases (43)   

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