KEGG   Oryza glaberrima (African rice): 127771364
Entry
127771364         CDS       T08853                                 
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
  KO
K10683  BRCA1-associated RING domain protein 1
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    127771364
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ogl03019]
    127771364
   04121 Ubiquitin system [BR:ogl04121]
    127771364
   03036 Chromosome and associated proteins [BR:ogl03036]
    127771364
   03400 DNA repair and recombination proteins [BR:ogl03400]
    127771364
Messenger RNA biogenesis [BR:ogl03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     127771364
Ubiquitin system [BR:ogl04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    127771364
Chromosome and associated proteins [BR:ogl03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     127771364
DNA repair and recombination proteins [BR:ogl03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     127771364
SSDB
Motif
Pfam: BRCT zf-HC5HC2H BRCT_2 zf-HC5HC2H_2 zf-RING_UBOX zf-C3HC4 zf-C3HC4_3 PTCB-BRCT RTT107_BRCT_5 zf-C3HC4_4 zf-C3HC4_2 zf-RING_10 PHD_NSD zf-RING_5
Other DBs
NCBI-GeneID: 127771364
NCBI-ProteinID: XP_052153219
UniProt: I1PMZ4
Position
4:complement(22548677..22552782)
AA seq 629 aa
MESFRRFLNPLVLNLQKMELELTCPVCLKLLNAPTMLPCYHTSCSKCATTRTMDGYSCAI
CKSAYRSQDLRPASHLEAIVNIHRSLSSTVSSMVTQQEAQADIPVAKTSFQGTPESGNRN
GAEKSDQVKSYTPVASKLAYNQSTGLAYGNVDGVKERNPALETRGAADVTAMPTILVQKG
PCRSQSSDGPRDLDCDSNDLEGELITSRSSPQSVLKREPNTANDDNRELKRQKSTDQDDR
QPAVAGAWKCEFCHSSKTTESTGPLSHYLHGEPLEDNQAWKPNVLHVHEKCIEWAPQAFF
TGDIANNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGISGCRWDDENFV
MLCPSHSSKKLPCERSKSKNKKTSLQRSSSDTMLDDLNSPSTIHMDGLWTASPFLTSEWV
ICGSALSSQEKEILDQFEHQTGITVTNGWRSNVTHVIANTDERGACARTLKVLMAILAGK
WVLNINWLKACMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSG
HFMPNYKVHLEDLITAAGGSILDKADLSSTSLIIYSMEPPQGSDPDTLNEVIRKRKAEAE
ELAATIGSRAVPHTCVLDSIASCTVQLTM
NT seq 1890 nt   +upstreamnt  +downstreamnt
atggagagcttcaggaggttcctgaacccgctggtgctcaacctgcagaagatggagctg
gagctcacctgccccgtctgcctgaagttgctcaacgcgcctaccatgctgccatgttac
cacacttcctgcagcaagtgtgctactacacggaccatggacggttacagctgcgcgatt
tgcaaatcagcttatcgttctcaagacctaaggcctgcctctcacctcgaggcaatagtg
aacatccacaggagcctaagctctacagtcagcagcatggtcactcagcaggaggctcaa
gctgatattcctgttgcaaagacatcatttcaaggaactccagaatcgggaaacagaaat
ggagcagagaaatctgatcaggtgaaatcatacaccccggttgcttctaaactggcatat
aaccagtcaactgggcttgcatatggaaatgtggacggcgtgaaagaaagaaatcctgca
ttggagactagaggtgcggctgatgtgactgctatgcccacaattcttgtgcagaaggga
ccctgccgatctcaatcttctgatggccctagggatctggattgcgacagcaatgacctt
gaaggagagctgataacaagcagatcatctcctcaaagtgtcttgaaaagagaaccaaat
acagcgaatgatgataatagagaattaaaaaggcaaaagtccactgatcaggatgataga
caaccagctgttgctggtgcttggaaatgtgaattttgtcactcttccaaaaccactgag
agtactggccctctgtcccattatctgcatggtgagccattagaggataaccaagcgtgg
aaaccaaacgttttgcatgttcatgagaaatgcattgaatgggcccctcaagcgttcttt
actggtgacattgcaaataacttggagcctgagttggcccgtgcttctaagatcaaatgc
agtgtttgtggactaaaaggtgcagcccttggctgccttgtcaagagctgccgcaagagc
tttcatgttccatgtgcccatgggatatcaggctgccgatgggatgatgagaactttgtt
atgctgtgtccttctcattcctcgaagaagttgccatgtgagagatcaaagtcaaaaaat
aagaagaccagcttgcagcgatcatcttccgatacaatgcttgatgacctgaactcacca
tctacaatccatatggatggactttggacagcttcaccttttctcactagtgaatgggtt
atatgtggatctgctctctctagtcaggagaaggaaatcttggaccagtttgagcaccaa
actggcatcactgtaactaacggttggaggtcgaatgtgactcatgtgattgctaatacg
gatgaacgtggggcatgtgccaggacactcaaggttctcatggccatactagctgggaaa
tgggttctgaatataaactggctgaaagcttgtatggaggctaaagaaccagtcccagaa
gagccttatgagatcagttctgatgttcatggctcctttgatggccctcgcatgggaaga
ctacgagcaatgcaaaatgcaccacatctgtttgcaggattgaccttttacttcagtggc
catttcatgcccaattacaaggttcaccttgaagatttgatcactgcagctgggggatca
atcttggacaaggctgatctctctagcacatccttgataatttacagcatggagccacca
caaggaagtgatcctgatacccttaatgaggtcatcagaaagaggaaggctgaggctgaa
gaattggcggcaacgattggctccagggctgttcctcatacatgtgttctggattctatt
gcatcatgcacagtgcaattgaccatgtga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (14)   
   Pfam (14)   
All databases (21)   

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