KEGG   Oryza glaberrima (African rice): 127773858
Entry
127773858         CDS       T08853                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    127773858
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ogl03019]
    127773858
   03036 Chromosome and associated proteins [BR:ogl03036]
    127773858
Messenger RNA biogenesis [BR:ogl03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     127773858
Chromosome and associated proteins [BR:ogl03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     127773858
    COMPASS/SET1 complex (yeast)
     127773858
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I ANAPC4_WD40 WDR55 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT122_1st eIF2A PQQ_3 WD40_RFWD3 Beta-prop_Nup120_160 Beta-prop_DCAF12 WD_LRWD1 Beta-prop_NWD2_C Beta-prop_IFT122_2nd AC_1
Other DBs
NCBI-GeneID: 127773858
NCBI-ProteinID: XP_052156026
UniProt: I1PXK4
Position
5:23709763..23712828
AA seq 320 aa
MAATLSQLDDGIVRGMAIGAVFTDYAGKINCLDFHRKEDLLVTSSEDDSIRLYNITSATL
LKTTYHRKHGADRVCFTHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRVVS
LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFAVAMEGGAIK
LFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCGFS
LESSPNVSTEAAFTPDGQYVISGSGDGTLHAWNINTIQEIACWNSHIGPITALKWAPRRA
MFATASTALTFWIPNNSSSN
NT seq 963 nt   +upstreamnt  +downstreamnt
atggcggcgacgctgtcgcagctcgacgacgggatcgtccgcgggatggccatcggcgcg
gtattcaccgactacgctgggaagataaactgcctcgacttccaccgcaaggaggatctc
ctcgtcacctccagcgaggacgactccatacgcctctacaacatcaccagcgccacgttg
ttgaagactacatatcataggaaacatggtgctgaccgtgtctgtttcactcaccatccg
agttctatcttatgttcatcaagatacaatctagagtcagcagagtcacttcgttattta
tcactgtatgacaaccgttgcttaagatattttaaaggacacaaagacagggttgtttca
ctatgtatgtcacctgtcaacgatagttttatgtcaggatcacttgatcacagtgtcagg
atatgggatcttcgtgtaaatgcttgtcagggtatactacgtttgcgtggtaggccttct
gttgcatatgatcagcagggacttgtttttgccgtggcaatggaaggaggtgctattaag
ctatttgattcccggtcatatgacaaaggtccctttgacactttcttggttggtggagat
acagctgaagtttctgacatcaaatttagcaatgatggcaagtccatgcttttgacaaca
accaacaaccatatatatgttctggatgcatatggaggggataagaggtgtggctttagt
ctggagtcatctcccaatgtatcaactgaagctgcttttactccagatggccaatatgta
atttcaggatctggtgatggtaccttgcatgcttggaacatcaatacaatacaagagatt
gcttgttggaacagtcacatcggtcctatcactgctttgaagtgggctccccgtcgagca
atgtttgcaactgcgtcaactgccctaactttctggattcccaacaattccagttcgaat
tag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (27)   
   Pfam (27)   
All databases (32)   

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