KEGG   Oncorhynchus kisutch (coho salmon): 109875102
Entry
109875102         CDS       T09179                                 
Name
(RefSeq) collagen alpha-3(IV) chain
  KO
K06237  collagen type IV alpha
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki04382  Cornified envelope formation
oki04510  Focal adhesion
oki04512  ECM-receptor interaction
oki04518  Integrin signaling
oki04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oki00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109875102
   04518 Integrin signaling
    109875102
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    109875102
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109875102
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    109875102
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oki04147]
    109875102
   00536 Glycosaminoglycan binding proteins [BR:oki00536]
    109875102
Exosome [BR:oki04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   109875102
Glycosaminoglycan binding proteins [BR:oki00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   109875102
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 109875102
NCBI-ProteinID: XP_031666417
Ensembl: ENSOKIG00005014904
Position
LG30:7160939..7229758
AA seq 1662 aa
MRTALLCFVFLGMMLLGIEAKDCACTGKSRCHCEGVKGNKGEKGYSGEAGLPGSVGYPGS
EGHPGSVGPKGDVGYHGPPGQYGNRGPEGKEGFAGTPGLPGIPGLQGPMGQQGASGCNGT
EGKRGSTGPPGLHSSDGLRGSPGAPGPKGEPQTIGSGPPGPRGRDGDQGVSGSPGPTGPP
GEAGLRGVEGLIGLHGAPGLKGQEGRSSSIPGPRGLKGHQGPPGVPGPKGIKLYAHAPFD
MKGEMGELGEKGCKGSLGYAQGYAGHIHFKGAKGDQGDVGTEGRPGKDGDRGPTGYKGRN
GNHGSAGPDGIPGPWGQKGGQGQDGDPGEVTMIGEAVFGSGGAKGQQGLAGPPGPTGVTG
PPGSTGFQGPPGSPAHNYGDDPYNRGAKGRSGPKGDKGDQGPIIDGEPGREGFPGTTGES
GDPGPPGPSGDSGNLKGFIGPPGEKGAKGLTGEQGYSGQYGLKGQKGEVCMLCTGKGSGE
PGPPGPPGQPGFPGFNAGPGPKGEPGFKGPSGPPGQPGPHGPSGVPGPPGMKGNPGSHNH
RGIKGEKGSPGLAGRSGKDGNHGNTGFPGRKGQRGPKGDPYYGPTGLKGDVGVPGPPGPQ
GYQGPDGLPGPVGIGPLGHPGSKGNSGVPGLPGIAGYPGQKGEPNKRVAYQGVPGPPGQM
GLPGLQGPPGPRGSVGLHGLHGYQGEKGDSGGFSTLGGRGPTGTKGDKGHPGPPGTSGSG
YPGRPGTLGIPGVPGSKGDVGFGAPAPVGPKGFQGGVGARGPPGDPGLLGRPGNPGPIGL
NGSPGPKGSKGGVGSQGPPGYAHTDCTGATTGPPGPPGPAGRPGPPGLNGPTGALGAPGA
PGFGRSGPAGDPGPPGVSGPGVQGLDGQKGGRGRDGLTGTLGPRGDPGLDGRSGSGPDGF
PGSGGQPGPRGSDGRDGDKGHRGVPGPVGDKGTTGPSGPAPITDLYGLPGDPGKLGRLGF
PGARGDPGYPGPKGIDGRDGDPGQHGPIGPPGDRGADDLYSVGGPGPSGPRGDIGNMGLP
GPHGIKGVLGYHGGLGQDGRPGPYGPKGSKGEPSYAQPGRIGPPGQKGEPALCNSHGSKG
ERGSPGCAGRPGSQGPTGAKGDPGHHGHHGPLGPAGPPGTDGPPGPPGPTPSYGAPGQPG
LPGPPGLCGPKGNQGRDGIPGPAGQKGETLIVGSTPGLRGENGQPGPKGDVGFPGPTVLG
PPGFTGDQGIEGPQGPRGEPGHRAVCLKGLKGDTGPHGRPGSPGRRGPRGQPGSGGYGYN
GDRGDTGSPGGRGFDGPRGDPGLPGPWGPRAIPGPPGSIGDPGHPGPPGFPGETGDHSYN
PGTKGPSGAKGRPGPAGRPGLDVSGQVRFYQGDPGPLGHPGNQGLPGPSGLPGRPGFAGS
TGPKGQHGHSPPGLPGFPGRKGDKGSPGRTGPVGYQGSPGQKGSRGPWGSSTAGLADSFL
LARHSQTIRVPDCPRGTTLIYSGYSLLFINGNERAHGQDLGSMGSCLPRFSTMPFLFCDT
DNTCRYAARNDYSYWLSTEKPMPRSMDLIRGDEIGSYISRCSVCEGSSNAIAIHSQTTQT
PDCPRDWESLWPGYSFVMQTGAGAEGSGQPLVSPGSCLEHFRQVPFIECHGRGTCNYFPD
SYSYWLASLDPNRMFSKPVPQTVKGRLLENVISRCRVCRKPY
NT seq 4989 nt   +upstreamnt  +downstreamnt
atgaggacagcattgctttgtttcgtgttcctggggatgatgttgctgggaattgaggcg
aaggattgtgcgtgtactgggaagtcgaggtgtcactgtgaaggagtcaaaggtaataag
ggagaaaagggttactcaggagaggctggtctacctgggtcggttggctatccgggctca
gagggtcatcctggatcagtgggaccaaagggggacgtgggctaccatggacctccagga
caatatggcaatcggggacctgagggtaaagaaggatttgctgggacaccaggtctacca
ggcatcccaggccttcaaggaccaatgggccaacaaggtgcctcaggatgcaatggaaca
gaggggaagaggggttcaactggtccacctggtctccacagcagtgatggattaagaggt
tcacctggagcacctggaccaaagggtgaacctcaaacaattggaagtgggccacctgga
cctagaggaagagacggtgaccagggtgtctctgggtcaccaggaccgacgggaccacca
ggggaagctggacttcgtggggttgagggattgataggcctacatggagcaccaggatta
aagggtcaagagggacgcagctctagtatccctggccctcgtggtctaaagggacaccaa
gggccccctggagtcccgggaccgaaagggatcaagctatacgcccacgctcccttcgat
atgaagggagagatgggtgaattgggtgagaagggctgtaagggttcacttggttatgct
cagggttatgctggccacatccattttaaaggagcaaaaggggaccaaggggacgttggt
actgagggaaggccagggaaggatggggatcgaggacccactggatataaggggagaaat
gggaatcacggttcagcaggtcctgatggaatccctggaccatggggacagaaaggtggt
cagggtcaagatggtgaccccggggaggtgaccatgattggcgaggccgtgtttggctcc
gggggtgccaaaggacaacaagggttggctggccctccaggtcccactggagttactggt
cccccaggtagcaccggtttccaggggcctcctggatctccagctcataactatggagat
gatccctacaatcgcggagcgaagggtcgcagtggacctaaaggggataaaggagaccaa
ggacccatcatcgacggcgagccaggcagagagggctttccaggaacaactggggaaagt
ggagaccctggacccccaggaccatctggagactcaggaaatcttaagggctttatagga
cctccaggggaaaagggagccaagggcttgacaggcgaacaagggtacagtggccaatat
ggtttaaaaggtcagaaaggagaggtctgtatgttgtgtacaggaaaagggtctggagag
ccgggacccccaggaccccccggtcagcctggattcccaggctttaatgcaggaccaggg
cccaaaggagagccaggattcaaaggcccatcaggaccacctggtcaaccgggtccccat
ggcccctcaggtgttccagggcccccgggaatgaagggaaatccaggttcccacaaccac
cgcgggataaagggagagaaaggatccccaggactagctggcagatcggggaaggatgga
aatcatgggaacactggcttccctggacgcaagggccaacgaggccccaagggtgatccg
tactatgggccgacgggtctgaagggagatgttggtgtcccaggccctcccggaccacag
ggataccaaggaccagatgggttgccaggtccagtaggcataggacctcttggccaccca
ggatccaaaggcaatagtggggtaccaggtctacctggcatagctggctacccaggtcag
aaaggtgagcccaacaaaagagtggcttaccagggagtcccaggcccaccaggacagatg
ggtctgcctgggttacagggccccccaggtcctcgtggtagtgttggtttacatggacta
catggttaccagggggagaaaggagacagtggtggattctccaccctgggaggacgagga
cccactggaacgaaaggtgacaaagggcacccgggacccccaggtacctctggaagcggc
taccctggacgacccggcacactgggaatccctggggttccagggtcaaagggtgatgtt
gggtttggggccccagctccagtcggccctaaaggtttccaaggtggtgttggggcccgg
ggacctccaggagacccagggctactgggacgaccagggaatccaggaccaataggtctc
aatgggtcaccaggccccaaaggaagtaaaggtggggtaggttcccaaggaccacctggt
tatgcacatactgactgtacaggagccacaaccggaccacctggtccgccaggaccagca
ggcagacccggacctccaggtttaaatggaccgacgggtgcgcttggggcccctggcgct
ccaggttttggacgttcaggcccggctggtgaccctgggccccctggggtctccggaccc
ggagtgcagggactagatggacagaagggaggcagagggagagatgggttaacaggcaca
ctaggtcctcgaggtgatcctgggctggatggaagatctggatcgggccctgacggattc
cctggatctggaggacaacccggccccagagggtcggatggccgtgatggggataaaggc
catagaggtgtaccaggccctgtgggggacaaaggaaccacaggcccttctggaccagca
cctatcacagacttatatgggctcccaggtgaccctggaaagcttggtcggcttggtttt
cctggtgcaagaggagaccctggatatcctggaccaaaaggcattgatgggagggatggt
gacccaggacaacatgggcctataggtcccccaggtgatcgtggagccgatgacctatat
tcagtaggaggaccaggcccatctggacccaggggagatattgggaacatgggtttacca
ggtccccatggaataaagggagttctgggttaccatggaggcctgggacaagacggtaga
cccggtccatacgggcctaaaggatctaaaggagagcccagttatgctcaaccaggccgc
ataggaccacctggacaaaagggcgagccagcattgtgtaacagccatggttccaaggga
gagagaggctctcctggttgcgcaggtcgtccaggctcccaagggcccactggagccaaa
ggagacccaggacatcatggacatcatggacccctaggtcctgcagggccaccaggtacc
gatggtcctccaggccccccaggacccactccgtcctatggagctccaggacaaccaggg
ttacctggccctcctggtctctgtggtcctaaaggtaaccagggtcgcgatggcattcct
ggacctgctggtcagaagggagagacattgattgtggggtcaactcctggcctacgtgga
gagaatggacagccaggtccaaaaggagatgtgggttttcctggccccactgttttgggg
cccccagggtttactggagaccaaggcattgaaggaccccaaggtcctcgtggtgagcca
gggcaccgagccgtttgtctcaaagggctgaaaggagacactggtcctcatggcagacct
ggaagccctgggcgacggggtccacggggacagccagggtctggaggttatggatataat
ggggacaggggagacacgggctctccagggggccgaggcttcgacgggcccagaggggac
ccagggcttccagggccatggggaccaagagccatccctggacctccaggatcaataggt
gacccaggtcaccctggacccccaggattccccggtgagacgggtgatcatagttataac
cccggcacgaaaggaccaagcggggccaaaggccggccaggaccagcaggtcgtccaggg
cttgacgtgtctggacaagtgagattctatcaaggggatccaggcccacttggtcacccc
gggaaccaaggacttccaggtccaagtgggctgccaggacggccaggatttgcaggctcc
acgggcccgaagggtcagcatggacacagccctccaggcctgcctgggttccctggacgc
aagggggacaagggatcaccgggacggacagggccggtgggctaccaggggtctccggga
cagaagggttctcgtggcccgtggggctccagcacggcaggcctggctgacagtttcctg
cttgcccgacacagccagacgatcagagtgcctgactgccccagaggtaccaccctcatc
tactctggatactctctgctcttcatcaatggcaatgagagagcccacggacaagaccta
ggctccatgggcagctgcctaccacgtttctccaccatgcccttcttgttctgtgacacg
gacaacacctgtcgctacgccgcccgcaacgactactcctattggctgtcgacggagaag
cccatgccgcgcagcatggacctaatcagaggagatgagatagggagctacatcagcagg
tgttcagtgtgtgagggcagctccaatgccatcgccatccacagccagaccacccagacc
ccagactgtcctcgtgactgggaatccctctggcctggatactcctttgtcatgcaaacg
ggtgcgggtgctgaggggtcggggcagccgctagtctccccaggctcgtgcctggaacac
ttccgccaggtccccttcatcgagtgccacggccggggaacctgcaactacttcccagac
tcctacagctactggctggcctcgctcgacccgaatcgcatgttcagtaagcctgtgccc
cagactgtgaagggacgtcttctagagaatgtcatcagtcgctgccgcgtctgcaggaaa
ccctattga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (7)   

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