KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112227571
Entry
112227571         CDS       T05605                                 
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
  KO
K08135  collagen type XV alpha
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:otw00535]
    112227571
Proteoglycans [BR:otw00535]
 Extracellular matrix (ECM) proteoglycans
  Basement membrane proteoglycans
   112227571
SSDB
Motif
Pfam: Collagen Endostatin Collagen_trimer DUF1554 Laminin_G_3 Laminin_G_2
Other DBs
NCBI-GeneID: 112227571
NCBI-ProteinID: XP_042164850
UniProt: A0A8C8IMT2
Position
LG29:complement(16966966..17049872)
AA seq 1226 aa
MTSRSLSLWSFGIHLALCYCQLSTAYQLLDERGSQGQIDLTELIGIPLPPSVSFITGFEG
YPAYSFGPDANVGRLTKSFIPDPFYRDFAMTVTAKPTTQRGGVLFAITDAYQRVVHLGVA
LSPVEDGSQRVLLYYTDPGDGSTKEAASFKLGDLTGRWARFTLTVQGAEVRLYMDCEEYH
RVAFQRSPEPLTFEASSGIFVGNAGGTGLDRFVGSIQQLVLKGDPTAPDDQCEEDDPYAS
GYGSGDDSFDDTETLDEVKKVVEEREYIMPEEPMITPVRAPPTEASPSDDEEDAGETSGQ
EVELTAERGPSQTADAAYRLGSAMPSQKGERGDPGPAGPPGSPGPPGPQSPLGDGSSGEG
EPGPRGPQGPQGPAGTPGAPGNDGQPGSGGKDGDPGENGVQGFPGLPGDPGPKGDKGDPG
VGKPGSPGPPGPPGRPNSSRSLNVVDGSGFEDFDSDTEIMTGPPGPPGSPGLPGPPGSSE
GLSASPGAPGTPGKDGEMGKPGQPGVDGHDGDPGPAGERGEKGEPGLSGPPGPKGEPSAA
GFPGLPGSEGPEGTPGLRGPPGPPGPPGRGFSLDLEDIEGSGTLGGFGAVMPRGPQGPIG
KPGPPGPKGKDGQDGLPGVAVKGEPGAPGAAGSSGLDGLPGHTGVKGDSGVMGPKGERGQ
DGLSFPGPPGPPGPPGPVINLQDLLLNDTEGVFNFSGGLESQGPRGPRGPKGDLGMTGFM
GPPGLKGEKGEPGVMVAADGSMMSGLTGPQGPKGIKGDCGVPGPAGVMGPIGPEGPKGEY
GYPGHPGRPGISGHKGDRGDAVVVSGPPGPPGPPGRPGMFNCPKGTVFPIPPRPHCKKAI
NGSKSSTNGGANCLPTGTKGDRGERGFPGMPAPSLTMLPKGTTGNKGDHGFRGDKGEKGE
AGLPGSPGMPGRSGLVGPKGETVMGPRGYPGVPGSPGTPGYGRPGPQGPQGPPGPPGEPS
RFGSAVTIHGPPGPTGPAGPPGTSAMTFPSSEVMMQQTKYSSEGTLSFTTGTGKLYIRVQ
QGWKEVLLGDLIPLPMNLLLNDEAQPGSGRKYGLKLVALNQPHTGNFGGVYIADKMCYEQ
AKAMGLSAYYRAFLSSPKPRAINKDLVPQKFRESYPVTNLRGDILFSNYKSIFTGGGGKF
PPNIPIYSFDGRDVLADPFWPKKSIWHGSNTFGNMAVDRSCESWRVNDISIVGQSSSLSS
GSLIGQQTSSCSNELIILCIETIEHV
NT seq 3681 nt   +upstreamnt  +downstreamnt
atgacttcacgcagcctctccctgtggtcctttggaatacatctcgccttgtgctactgc
caactgtcgactgcatatcagcttctggacgagcggggctcccagggccagatagacctg
accgagctgatcggcattcctctccccccatcagtctccttcatcacagggttcgagggc
tacccggcctacagcttcgggcccgatgccaacgtaggccgcctcaccaagtccttcatc
cccgaccccttctaccgcgactttgctatgaccgtcaccgccaagcccaccacgcagcgc
ggtggggtcctcttcgcaatcaccgacgcctaccagcgggtggtgcacctgggggtggcg
ttgagccccgtggaggatgggtctcagcgggtgctcctttactacaccgacccgggggat
gggagcaccaaggaggcggcaagcttcaagctgggtgacctgacggggaggtgggcccgc
ttcacgctgacggtgcagggggcggaggtgcgcctctacatggactgtgaggagtaccac
cgcgtggccttccagaggagcccggagcccctcacctttgaggccagctcgggcatcttc
gtgggcaacgccggtggcacagggctggacaggtttgtgggttctattcagcagctggtt
ctgaagggagaccccacggccccagatgaccagtgtgaggaggacgacccctatgcatct
gggtatgggagtggagacgactccttcgatgacacagaaactctggatgaagtgaagaag
gtagtagaggagagagagtacattatgccagaggagccaatgatcaccccagtgcgtgcc
cctcccacagaggcatcgcccagtgacgatgaggaggatgctggcgagacctcgggtcag
gaagtggagctgaccgctgagagaggaccaagtcagacagcggatgcagcctatagacta
ggaagtgcgatgcccagtcagaaaggagagcgaggagacccagggccagccggaccccct
ggctcccccggccccccaggcccgcaaagcccgttaggcgatggctcctctggggaggga
gagccaggaccaaggggcccccaggggcctcagggaccagcaggaacacccggagcaccc
ggcaacgacggccagccaggcagtggagggaaagatggtgacccaggagaaaatggagtt
cagggattcccaggcttgccaggagatcctggtcccaaaggagacaagggtgatcctgga
gtgggcaaacctggttcccccggtcctcccgggccaccgggtcgacccaactcatccaga
tccctgaatgttgtggacggttcgggctttgaggactttgacagtgacacagagattatg
acaggtccccctggtccaccgggttctccagggctgcctggccccccaggttcgtctgag
ggcctctctgcgtcacctggagcccctgggacccccgggaaggatggagagatgggtaaa
cctggacagcctggggttgatggacacgatggggaccctggtccagcaggcgagagagga
gagaagggtgagccgggtctgagcggacctcctggaccaaagggggagccaagtgctgca
gggttcccaggtctgcccggctcagagggcccagaggggacgccaggcctgaggggccct
cctgggccaccgggacccccaggaaggggcttcagcttggacctggaagacattgagggg
tctgggacactcggtggctttggggcagtgatgcccagaggccctcagggtcctattggg
aaacctggtcctccaggaccaaagggcaaagacgggcaggacgggcttcctggtgtagcg
gtaaagggggagcctggtgctccgggagcagcagggtcctctgggctggacggactgcca
gggcacacgggagtgaagggggacagcggtgttatgggaccaaagggagagagaggtcag
gatggcctcagtttccccggccctccaggtcctcccgggcctccaggaccagtcatcaac
ctccaggatctcctgctcaacgatacagagggtgtgtttaacttctcaggagggctggaa
tctcaggggcccagggggccacggggtccaaagggggacttggggatgacaggtttcatg
gggcctccaggactaaagggcgagaagggtgagccaggggtcatggttgccgctgatggg
tctatgatgtctggactcacagggccacaagggcccaaagggatcaagggcgattgtggt
gtacctggaccagctggcgtgatgggtcccattgggccagaaggacccaaaggagaatat
ggctatcctggtcatccgggtcgtcctggaattagtggtcataaaggagacagaggagac
gctgtggttgtgtcggggccccctggccctcccggacccccaggacgtcccggaatgttc
aactgccccaaaggaacagtttttcccatccctcccagaccacactgcaaaaaggccata
aatggttctaagagctcaacaaatgggggggctaactgtcttccaactgggaccaaaggg
gacaggggggagaggggtttccctgggatgcctgccccatcacttacaatgcttcccaaa
ggaactacggggaataaaggggaccacggcttcaggggggacaagggagagaagggggag
gccgggttaccgggctcacctggtatgcctgggagatcgggactggtgggccccaaagga
gaaactgttatggggccccgtggctatccaggtgttccggggtctcctggtactcctggg
tatgggagacctggccctcaaggcccccaagggcctcccggaccccccggagaaccctct
cgatttggctcagctgtgaccatccatgggccaccaggccccactggcccggctgggcct
cctgggacctctgccatgacgtttccttccagcgaggtcatgatgcaacagacgaaatac
agcagcgaggggaccctaagcttcaccacggggacaggcaaactctacatccgggtgcaa
cagggatggaaggaagtcctgcttggtgacttgatccccctcccaatgaatctccttcta
aatgatgaggctcagccaggcagcggcagaaaatatgggctcaaactggtggctctgaac
cagccccacacagggaactttggtggggtctacatagcagacaagatgtgttatgaacag
gccaaggccatgggcttgtccgcttattaccgggccttcctatcctccccaaaaccccgg
gccattaataaagacctggtcccccagaagttcagggagagctaccccgttaccaacctc
aggggtgacattttgttcagtaactacaagtctatcttcactgggggtggaggcaaattc
ccgccaaacatcccaatctactccttcgatggacgggacgtattggcagaccccttctgg
cctaagaagagcatctggcacggctccaatacgtttggcaacatggcggtagaccggtcc
tgcgagtcgtggcgggtcaacgacatttccatcgtgggccagtcgtccagtttgtcctcg
ggctcccttataggacagcaaacaagcagctgctccaacgagttaattattctctgcatc
gagaccatagagcatgtttaa

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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