KEGG   Stutzerimonas chloritidismutans: LLJ08_19150
Entry
LLJ08_19150       CDS       T07923                                 
Name
(GenBank) RecQ family ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
pchl  Stutzerimonas chloritidismutans
Pathway
pchl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pchl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LLJ08_19150
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pchl03019]
    LLJ08_19150
   03400 DNA repair and recombination proteins [BR:pchl03400]
    LLJ08_19150
Enzymes [BR:pchl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LLJ08_19150
Messenger RNA biogenesis [BR:pchl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LLJ08_19150
DNA repair and recombination proteins [BR:pchl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LLJ08_19150
SSDB
Motif
Pfam: Helicase_C DEAD RecQ_Zn_bind ResIII CbiD_C
Other DBs
NCBI-ProteinID: UEG61219
Position
complement(4067530..4069470)
AA seq 646 aa
MIEQTLKQTFGYDGFRPGQDQAIRAVVAGRSAAAIFPTGSGKSLCYQVPALLLPHLTLVV
SPLLALMQDQLAFLHRHGIAAASIDSAQSREQASETMARAKSGELKILMISVERLKNERF
RNFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQVLLLTATATPPVIAD
MQAKFSIAPDDVVTTGFYRPNLNLLVEPVSGFNKQRRLVEWLADKSGQPTIVYVTQQKTA
EQVAEHLAQRGFPASAYHAGMAHELRESIQRRFMAGELNCIVATIAFGMGIDKSDIRNVV
HYDLPKSVENYSQEIGRAGRDGKPSDCLVLANRDSLSVLQNFVYGDTPEREGIRCVLDEL
LQAAAPDQKGSGQWELMLNQLSDQSNIRQLPLKTLLVQLELRGIISPRFAYFAEYRFKYL
LEPEVLVAKFEGERRQFVEAIVHSSARARTWCTLDFDALYQQHGADRGRVVKALEYFQEK
GWIELESKQMTDVYALLNPDFDAEGLSIELHEYFKQHEASEITRIDNMLALFESSECLSQ
RLAAYFGDQQAPQRCGHCSVCRGQVAQLPEPPALAPLNDVALDARCAEFSQRYTQLKGDA
PSAECLTRFLCGISVPVFTKLKARQIPGFASLEAYPYAEVRARLAG
NT seq 1941 nt   +upstreamnt  +downstreamnt
atgatcgaacagaccctcaagcagactttcggctacgacggctttcgtcccggccaggat
caggccattcgcgccgtggtggccgggcgctcggcggccgctatctttcccactgggtct
ggcaagtccttgtgttatcaggtgccggcgctgctattgccgcatctcaccttggtcgtt
tcgccgctgttggcgctgatgcaggaccagctagctttcctgcaccggcacggcatcgcc
gcagccagcatcgactcggcgcagagccgcgagcaggccagcgaaaccatggcccgcgcc
aagtccggtgaactgaagattctgatgatttcggtggagcggctgaagaacgaacgcttc
cgtaacttcatcagccaagtgccgatctcgttgctggtcgtcgatgaggcgcattgcatt
tccgagtgggggcacaacttccgcccggattatctcaagcttcccgactaccagcgccaa
ttcaatatcccgcaggtgctgctgctgaccgccacggcgacaccgccggtgattgccgac
atgcaggccaaattctcgattgcgccggacgacgtcgtgactaccggcttctaccggccc
aatctcaatctgctggtggagccggtcagcggctttaacaagcagcgccggctggtggaa
tggttggccgacaagagtggtcagccgaccatcgtctacgtcacccagcagaagacggcc
gagcaggttgccgagcatctggcgcagcgcggcttcccggccagcgcctaccacgccggc
atggcccacgagttgcgtgagtcgatccagcgccgcttcatggcaggcgagctgaactgc
atcgtcgccaccattgccttcggcatgggcatcgacaagtcggatatccgcaacgtggtg
cactacgacctgcccaagtcggtggagaactacagccaggagatcggccgcgcgggccgc
gatggcaagccatcggactgcctggtgctggccaaccgggacagcctcagcgtgctgcag
aattttgtctatggcgacacaccggagcgcgagggcatccgctgcgtgctcgacgagctg
ctgcaggcggctgctcctgatcaaaagggcagcggacagtgggagctgatgctcaaccag
ctatcggaccagagcaacatccgccagttgccgctgaaaaccctgctggtgcagctggag
ctgcgcggcatcatctcgccgcgcttcgcctatttcgccgagtaccgcttcaagtacctg
ctcgaacccgaggtgctggtggcgaaattcgaaggcgagcggcggcagttcgtcgaggcc
atcgtgcacagctcggcgcgggcaaggacctggtgcacgctggatttcgatgcgctctac
cagcagcacggtgcggaccgtggccgggtggtaaaggccctggagtacttccaggaaaaa
ggctggatcgagctggagagcaagcagatgaccgacgtctatgcgctgctcaatccagac
ttcgacgcagagggcttgagcatcgaactgcatgaatacttcaagcagcacgaagcgagc
gagatcacccgcatcgacaacatgctggcgctgttcgaatccagtgaatgcctgagccag
cggttggcggcctattttggggaccagcaggcgccgcaaaggtgtggccattgctcggtc
tgtcgcgggcaggttgcgcaacttcctgaaccaccggcgctggcaccgctcaacgacgtc
gctctcgacgcccgctgcgccgaattcagtcagcgctacacgcagctcaagggtgatgcg
cccagcgccgaatgcctgacgcgctttctctgcggtatcagcgtgccggtgttcaccaag
ctcaaggcgcgccagatcccaggtttcgcctcgctggaggcctatccctacgctgaggtt
cgcgcgcgcctagctggttag

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (5)   
   Pfam (5)   
All databases (6)   

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