GenomeNet

Database: Pfam
Entry: Calici_MSP
LinkDB: Calici_MSP
Original site: Calici_MSP 
#=GF ID   Calici_MSP
#=GF AC   PF05752.16
#=GF DE   Calicivirus minor structural protein
#=GF PI   Calicivirus_MSP; 
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_6811 (release 8.0)
#=GF GA   25.00 25.00;
#=GF TC   25.40 390.80;
#=GF NC   24.90 24.20;
#=GF BM   hmmbuild  HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 --cpu 8 -Z 90746521 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   12115089
#=GF RT   Natural history of human calicivirus infection: a prospective
#=GF RT   cohort study. 
#=GF RA   Rockx B, De Wit M, Vennema H, Vinje J, De Bruin E, Van Duynhoven
#=GF RA   Y, Koopmans M; 
#=GF RL   Clin Infect Dis 2002;35:246-253.
#=GF DR   INTERPRO; IPR008437;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of minor structural proteins largely from
#=GF CC   human calicivirus isolates. Human calicivirus causes
#=GF CC   gastroenteritis [1]. The function of this family is unknown.
#=GF SQ   1
#=GS VP2_SVSAP/1-165  AC Q672H9.1
VP2_SVSAP/1-165             MSWLVGALQTFGSLADVAGTVSNIVYQQRQAAQLEKQNELMETWMNKQEALQKSQMELTRDLSINGPAARVQSALDAGFDEVSARRIAGSGERVIWGNLDRPIMHAGTMDSIRQTRHLDSLSHSLATFKNGTPFGKPAPPTAKSGRPQATTAQITIGHNPGSTSV
#=GC seq_cons               MSWLVGALQTFGSLADVAGTVSNIVYQQRQAAQLEKQNELMETWMNKQEALQKSQMELTRDLSINGPAARVQSALDAGFDEVSARRIAGSGERVIWGNLDRPIMHAGTMDSIRQTRHLDSLSHSLATFKNGTPFGKPAPPTAKSGRPQATTAQITIGHNPGSTSV
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