KEGG   Candidatus Phycorickettsia trachydisci: phytr_5780
Entry
phytr_5780        CDS       T05372                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ptc  Candidatus Phycorickettsia trachydisci
Pathway
ptc03030  DNA replication
ptc03410  Base excision repair
ptc03420  Nucleotide excision repair
ptc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ptc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    phytr_5780
   03410 Base excision repair
    phytr_5780
   03420 Nucleotide excision repair
    phytr_5780
   03430 Mismatch repair
    phytr_5780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ptc03032]
    phytr_5780
   03400 DNA repair and recombination proteins [BR:ptc03400]
    phytr_5780
Enzymes [BR:ptc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     phytr_5780
DNA replication proteins [BR:ptc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     phytr_5780
DNA repair and recombination proteins [BR:ptc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     phytr_5780
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     phytr_5780
   MMR (mismatch excision repair)
    DNA ligase
     phytr_5780
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      phytr_5780
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT DNA_ligase_ZBD HHH_2 PTCB-BRCT RNA_ligase Nlig-Ia MutL DUF7143 ALIX_LYPXL_bnd
Other DBs
NCBI-ProteinID: AVP87521
UniProt: A0A2P1P8D1
Position
complement(646765..648831)
AA seq 688 aa
MLSKYQEINIEELSKSEAKKLLKELSNEIEKHNKAYYVENKPLISDAGYDLLVRITKSLQ
EKFPDIHLRQDVLQQVAPKAQAGFSKITHKVPMLSLDNAFEVEDFDDFITRCQRFILIDH
FPQLCCELKIDGLSFAATFENGKLKYAATRGDGYVGEDITENLRTIKTFPQNLQNVPDIF
EVRGEIYISKNDFLELNKSQLAKNLPTFANARNAAAGSIRQLDPSVTAARPLRYFVYSVV
DTDNLFRTQDEILKYCENLGFRLEQYSQLASNLDEAISFYEKIKSLRDSLDHEIDGVVYK
VNDLALQKRLGFVGKAPRFAIAYKFPAFLATTKIKDIKIQVGRTGAITPIAELEKVNISG
VVVGKATLHNFDDIARKDIRIGDCVSLYRAGDVIPKIQEVDFSKRHGNERKVDLPRFCPS
CNTPLEFNGDDAIIRCNNIWNCPDQLLEKIIHFASRDALNIVTLGDRQVKFLRDQQFIKT
PLDIFYLSQHADVLTGLDGWGKKSVDNLLANIEKAKNTSLDKFIYALGIRYLGQTNSFML
AKEFKTANNFLSALIELNKDNKEILEKLDLIDGMGAKTLQGIYEFALHEPNIQMVRNFIS
VLSIKDLVFEANSAISGLNIVFTGTMQSMSRSEAKMIAQNLGAKVGSAISSNTDILVVGE
GSGSKLKKAKELSIKTLSEQEWKELIKE
NT seq 2067 nt   +upstreamnt  +downstreamnt
atgctaagtaaatatcaagagataaatatagaagagctaagtaaaagtgaagcaaaaaag
cttttaaaggagttgagtaacgagatagaaaagcataataaggcatattatgttgaaaat
aagcctttaataagtgatgcgggttatgacttgttggtgcgaataacaaaatccttgcaa
gaaaaatttccagatatacacttacggcaagatgtattacagcaggtagcacctaaagct
caagcgggatttagtaagattactcataaagttccaatgctttctttggataatgctttt
gaggtagaagattttgacgattttatcacgcgttgccaacgcttcatactaattgatcat
tttccgcaattatgctgtgaactaaaaattgatggtttatcttttgctgctactttcgag
aatggaaaattaaagtatgcggcaacgcgaggcgatggttatgttggcgaagatattact
gagaatttacgcacaatcaaaacttttcctcaaaatcttcaaaatgttccagatatattt
gaagtgcgtggtgaaatatatatctctaaaaacgattttcttgaactaaataaatcgcaa
ttagctaaaaatcttcctacatttgctaatgctcgtaatgctgccgctggatccataagg
cagctagatccgagtgttacggcagcaagacctctaagatattttgtatacagtgttgtt
gatactgataatttatttagaactcaggatgagatcttaaaatattgcgagaatcttggt
tttcgtttagaacaatattctcaacttgcaagtaatttggatgaggctatcagtttttat
gaaaaaattaaaagtttaagagattcattagatcatgagattgatggagttgtatataag
gttaatgacttagctttgcaaaaacgcttaggttttgttggaaaggcaccaagatttgcg
attgcctataaattccctgcgtttttagccacaactaagattaaggacattaagattcag
gtcggcagaactggtgctataactcctattgctgaacttgaaaaggtcaatatctctggt
gttgttgtgggaaaggctacgctgcataattttgatgatatagctcgtaaagatattagg
ataggggactgcgtatctttatatagggcaggggacgttatacctaaaattcaggaagtt
gatttttcaaagcgtcatggcaatgaaagaaaagtagatttaccaaggttttgcccatca
tgtaacacgcctttagaatttaatggcgacgatgcaataatcaggtgtaataatatttgg
aactgtcccgatcaacttttagagaaaattattcattttgcctcgcgtgatgcattaaac
atagtgactttaggagatcgacaggtcaaattcttacgagatcagcaattcattaaaact
cctttggatatattttatttaagtcagcatgcagatgttttaactgggttagatggatgg
ggtaaaaaatctgtcgataatttactagctaatatagagaaggctaaaaatacatctttg
gataagtttatatatgccttaggaataaggtatttaggacaaacaaactcattcatgctg
gccaaagagtttaaaaccgctaataactttttgagtgctttaatcgagctaaataaagat
aataaagagatattggagaagcttgatttaatagatggaatgggagcaaaaactttacaa
ggaatatatgagtttgcattacatgagcccaatatccaaatggtaaggaattttatttct
gttttaagtattaaagatcttgtattcgaggcaaattctgctatcagtggtcttaatata
gtatttactggcactatgcagtctatgtcgcgcagtgaagccaagatgattgctcaaaat
ttgggagcaaaagtgggtagcgccatttctagtaatactgatatactggttgtaggtgag
ggtagtggctctaagctaaaaaaggctaaagagttaagtattaagaccctttcggagcaa
gaatggaaggaattaattaaggaatga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (14)   

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