KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111951983
Entry
111951983         CDS       T05762                                 
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
  KO
K04556  parkin [EC:2.3.2.31]
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04120  Ubiquitin mediated proteolysis
salp04137  Mitophagy - animal
salp04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    111951983 (prkn)
   04120 Ubiquitin mediated proteolysis
    111951983 (prkn)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    111951983 (prkn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:salp04131]
    111951983 (prkn)
   04121 Ubiquitin system [BR:salp04121]
    111951983 (prkn)
   03029 Mitochondrial biogenesis [BR:salp03029]
    111951983 (prkn)
Enzymes [BR:salp01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.31  RBR-type E3 ubiquitin transferase
     111951983 (prkn)
Membrane trafficking [BR:salp04131]
 Autophagy
  Mitophagy
   PINK1-Parkin associated proteins
    111951983 (prkn)
  Aggrephagy
   Other aggrephagy associated proteins
    111951983 (prkn)
  Xenophagy
   Other xenophagy associated proteins
    111951983 (prkn)
Ubiquitin system [BR:salp04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   RBR proteins
    111951983 (prkn)
Mitochondrial biogenesis [BR:salp03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-dependent mechanism factors
    111951983 (prkn)
SSDB
Motif
Pfam: zf-RING_14 zf-RING_12 IBR_2 ubiquitin IBR IBR_1 ADAMTS_CR_3 Rad60-SLD Dsc3_N
Other DBs
NCBI-GeneID: 111951983
NCBI-ProteinID: XP_023826141
Position
LG25:complement(8974913..9063610)
AA seq 458 aa
MIVYVRFNSSHGFPVELEEGASIAVLKEKVGRLQGVQPEQLRVIFAGRELLSDCTLQGCD
LPEQSTVHVVLPPPGSGRCSDLALQHRLGRGVDSLTRLDLTASRLPSTSTGLAVILETDD
EQRAREEPEHTEPRPHSSFYVYCKSVCRAIQPGKLRVRCRACKQGTLTLSRGPSCWDDVL
LPERIHGVCQSEGCLGRVAEFYLKCAAHPTSDDDTSVALDLVMPNVRDVPCIACTDIMSP
VLVSQCPDRHVICLDCFHMYCVTRLNERQFIHHPDVGYSLPCAAGCPDSLITELHHFRAL
GDEQYERYQQYAAEECLLQMGGVLCPAPGCGAGLLPEEDKRMIQCLLSNGLGCGFVFCRD
CKEGFHEGECRVRSSPVSGGALQGYVVDEEAALQARWEQASQETIDETTRPCPHCKVPVE
KSGGCMHMVCPRAQCKFEWCWVCRVEWNRECMGNHWFG
NT seq 1377 nt   +upstreamnt  +downstreamnt
atgattgtgtatgtgaggtttaactccagccatggcttcccagtggagctggaggagggg
gccagcatcgcagtgctgaaggagaaggtggggaggctgcagggggtacagccggagcag
ctgagagtcatctttgctggcagagagctgctcagcgactgcaccctccagggctgtgac
ctcccagagcagagtaccgtgcacgtggtgctgcctcccccagggtcgggccggtgctct
gacctggccctgcagcaccgtctgggtcgaggggtggacagcctcacccgcctggacctc
accgcctcccgcctgccctctacctccactggcctggccgtcatactggaaactgatgac
gagcagagagccagggaagagcctgagcacacagagcccagacctcacagcagcttctat
gtgtactgcaagagtgtgtgccgggccatccagccggggaagctacgcgtgcgctgccgg
gcctgcaagcagggaaccctcaccttgagccggggcccgtcatgttgggacgatgtcctc
ctcccagagcgtatccatggcgtctgtcaatcagagggttgccttggcagagtagcggag
ttttacctgaagtgtgctgcccaccccacctctgatgatgacacgtctgtggccctggac
ctcgtcatgcccaatgtgcgggatgtcccatgcattgcctgcacagatatcatgagtcca
gtgttggtgtcccaatgtccagaccgccatgtcatttgtctagactgcttccacatgtac
tgtgtgacccgcctcaacgagcgacaattcatccaccacccagatgtcggctactcactt
ccatgtgcagctggctgcccagactctctcataacggagttgcatcacttccgggcccta
ggtgatgagcagtatgagcggtaccagcagtatgcagccgaggagtgtctcctccagatg
gggggagtgttgtgtccagcccctggatgtggagcagggctgctgccggaggaggacaag
aggatgatccagtgtctgctcagcaacggtttgggatgcgggtttgtgttctgccgtgac
tgtaaggaaggattccatgagggggaatgtcgtgtgaggtcatcacctgtctcaggagga
gccctgcagggttatgtagtggacgaggaggcagctcttcaggctcggtgggagcaggcc
tcgcaggagactatagacgagaccacccgtccatgtccacattgcaaggtcccagtggag
aagagtggtggctgtatgcacatggtgtgtccccgtgcccagtgtaagtttgagtggtgc
tgggtctgtcgtgtggagtggaacagggagtgtatgggcaaccactggttcggctga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system