KEGG   Gracilinema caldarium: Spica_1358
Entry
Spica_1358        CDS       T01573                                 
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
scd  Gracilinema caldarium
Pathway
scd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Spica_1358
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scd03019]
    Spica_1358
   03016 Transfer RNA biogenesis [BR:scd03016]
    Spica_1358
Enzymes [BR:scd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Spica_1358
Messenger RNA biogenesis [BR:scd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Spica_1358
Transfer RNA biogenesis [BR:scd03016]
 Prokaryotic type
  tRNA degradation factors
   Spica_1358
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH_11 KH_KhpA-B S1_RRP5 KH_2 KH_DUF2096_C
Other DBs
NCBI-ProteinID: AEJ19504
UniProt: F8F3C8
Position
1538176..1540287
AA seq 703 aa
MVQRVSMQIGGEELVLETGKMAKQANGAVFAQYAGAAVIATVCASSSGEEDLDYVPLTVD
YNEKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFDKRFGRDIQVVPTTVSADQ
VNPPDILAILASSAAVHISDIPFNGPIAGVRVCAIGNELIVNPTYDQIDKADLEIVVAGT
RDGITMVEGGGKEVSEDLMIAALEKAHQVIIQFCDLQEKLRELAGKEKLPLLESQTVLQN
RDAIRQAAYPRMQEACFVKGKHERSAAIKAVKDDLAAQYAEQLTDEKQLKQFNALFEELE
YEILRTSILERGIRVDGRGTEDIRPITCEIGVLPRTHGSALFTRGETQALAVTTLGTVFD
EQIFDDIDGDKRERFILHYNFPPFSVGEVGRLGTGRREIGHGNLARRSLEAMVPSKEEFP
YTIRVVSEILESNGSSSMATVCGGTLSMLHAGVPMKKPVAGIAMGLITDGNRYAVLSDIL
GEEDHLGDMDFKVAGTEDGITGFQMDIKIAGVSPEIMRKALDQAKRGRLHILSIMNQTLN
KPTEKISEFAPKIVSLKIDTDKIGALIGPGGKTIKALCEQYGVTINTENDGTVTIYGKNA
KNAEDARAAVIGIVEDPEVGRIYDGVVKRIMEFGAFVEILPGKEGLCHISKLSRQRIANV
TDVVKEGQRIPVKLLEIDKMGRLNLSYIDAIEAAEDEKQGRRG
NT seq 2112 nt   +upstreamnt  +downstreamnt
atggtacagagagtttcaatgcaaattggtggagaggaattggtccttgaaaccggaaaa
atggcaaaacaggcaaacggtgctgtttttgctcagtatgcaggagcggcagttattgct
acagtctgtgcatcgagcagtggcgaagaagatttggattacgtcccactcaccgtcgat
tacaatgaaaaatattatgcagcaggcaagattcccggtggttttattaaacgggaaggc
cggcccaaggacaaggaaatcctggtatcccgtcttatcgatcggccaatgcgtcctctt
tttgataaacgttttgggagagatattcaggttgtacctaccacggtttctgcagaccag
gtaaaccccccggacattcttgcgattttagcatcttctgcagcggtacatatttccgat
atcccctttaatggccctattgcaggggtacgggtttgtgctataggaaatgagctgatt
gtaaaccccacctatgatcagatcgataaggcggatttagaaattgtggtagcaggaacc
cgagatggcattactatggtagaagggggcggaaaggaagtatcggaagatcttatgatt
gccgcccttgagaaggcccatcaggtgattatccagttctgtgatttgcaggaaaaactg
cgggaacttgcaggaaaggaaaaactaccgcttcttgaatcccagacggtactccagaac
cgggatgcaattcggcaggcagcctatcccaggatgcaggaagcctgttttgtcaaggga
aagcatgagcgttctgctgcgatcaaagcagtgaaggacgatcttgcagcccaatatgcg
gaacagctgaccgatgaaaaacagctgaaacagtttaatgccctcttcgaagaactggag
tatgaaattcttagaacctccattctagaacggggtatccgtgttgatggtcggggaact
gaggatattcgccctattacctgtgaaattggcgttttgccccgcacccatggttcagcc
ctctttacccggggtgaaacacaagcattggcagtaaccaccttagggaccgtatttgat
gaacagatttttgatgatattgatggagataagcgggaacgttttatccttcattacaat
ttccctcccttctcggtaggtgaagtaggccgccttggtacgggccgtcgggaaatcggt
cacgggaacctggctcgtcggtctctggaagccatggttccttcaaaagaggaattcccc
tataccattcgggtggtttctgaaatcctggaatccaatgggtcctcatctatggctacg
gtctgtggcggtaccctttctatgctgcatgcaggggttcccatgaagaaacccgttgca
ggtattgccatgggactcattaccgacggtaacaggtacgcggttctttcagatattctc
ggtgaggaagatcatctcggcgatatggactttaaggttgccggtactgaggatggtata
acgggcttccagatggatattaagattgccggggtaagccctgaaatcatgcggaaagcc
ctggatcaggcaaaacgtgggcggcttcatatcctctccatcatgaaccaaaccctcaat
aagcccaccgaaaagatcagtgaattcgcaccaaaaattgtttctcttaaaatagatacc
gacaaaatcggtgcactcatcggtcccggcggtaagactataaaagctctctgcgaacag
tacggtgttaccatcaatactgaaaacgatggtaccgttaccatttatggtaagaatgct
aaaaatgcagaggatgcccgtgctgcggttattggtatcgtcgaagatcctgaagtgggg
cgtatctatgatggtgttgtaaaacggatcatggaatttggtgcctttgtagaaatcctg
cccgggaaagagggtctgtgccatatttcgaaactttcacgtcagcggatcgccaatgta
accgatgtcgtcaaggaaggacagcgcataccggttaaactgctggaaattgataaaatg
ggacgattaaatctgtcctatattgacgccatcgaagctgctgaggatgaaaaacagggc
cggagaggttag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (13)   

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