KEGG   Shewanella putrefaciens 200: Sput200_1850
Entry
Sput200_1850      CDS       T02015                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
shp  Shewanella putrefaciens 200
Pathway
shp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:shp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Sput200_1850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:shp03400]
    Sput200_1850
Enzymes [BR:shp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Sput200_1850
DNA repair and recombination proteins [BR:shp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Sput200_1850
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C MFD_D3 CarD_TRCF_RID ResIII SNF2-rel_dom Cas3-like_C_2 UB2H ERCC3_RAD25_C AAA_30 RecG_dom3_C
Other DBs
NCBI-ProteinID: ADV54306
UniProt: E6XJR9
Position
complement(2095417..2098905)
AA seq 1162 aa
MTHFSALTPPVVKNGTQMQTLSALGGVCQAVTLASLVRQHPGTTLLVTSDTPSALSLELE
LTYLLGKCDIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQISQTEHSVVIVPVTTLMM
RLPPKAYLSANVFVLKKGDRYQLHNVRQHLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG
VNMPLRIELFDDEVETIRHFDPETQRSLHPVESIRLLPAKEFPTDSAAIEGFRQRYRRRF
EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDEVATLFEYLPKETQLVTLGDIEKSARAH
LQEVETRYQDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFISPTTESVETGKATVI
DANQLPDISANHKLKQPLLALQDYAQNAPRMLFSAESEGRREALLELLSKIQLKPALFSH
FDEFIQSDAKLGLIVSPLSRGCLLKLSPKDAVSIICETELFGHRISQQRRREKQRQISND
ALIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYAGGDKLYVPVSNLHL
ISRYSVGADEDAHLNKLGNETWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCQIDEE
EYAQFAQGFPFEETVDQESAIHAVLADMRSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNA
GKQVVVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLKQLEEGKVDIVI
GTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMS
GMRDLSIIATPPAKRLAVKTFVRESDLATVREAILREILRGGQVYYLHNNVESIEKCAQG
IIDLVPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERA
DTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQ
DLEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKALKQGKEPSLAQMLNQQCEIELRI
PALLPEAYVSDVNIRLSLYKRIAGCETQEALDELKVELIDRFGLLPEPTKNLMEMTLYKH
QATRLGATKIEVHTKGGSIEFSHDHVIDPGFIIGLLQSQPQIYRMEGPNKLKFSLTAETA
KDRLDVVKLLLEQLLQHRLGDK
NT seq 3489 nt   +upstreamnt  +downstreamnt
atgactcacttttcagccctaacgccaccagtcgtcaaaaatggtactcaaatgcaaacc
ctatccgcactcggtggtgtttgccaagcggtcacactcgccagcttagtgcgccaacat
ccagggacaacactgcttgtcaccagcgacacgcctagcgccttaagcttagagttagag
ctcacctatttactcggtaaatgtgatatcaaggttcggctattcccagatcgtgagacc
ttgccctatgacagtttctcgccccatcaggatctgatctctcaacgcctagaaacgctg
tcacaaatatcccaaaccgaacacagtgtggttatcgttcccgtcaccactttgatgatg
cgcctgccacctaaagcctatttgagcgccaacgtctttgtacttaaaaagggcgataga
tatcaattacacaatgtacgccaacatttaaccgatacaggttaccacttggtggagcaa
gtgtatgaacatggcgagtttgccattcgtggttcgattttggatattttcccgacgggc
gtaaacatgccgctgcgcatcgagctattcgatgatgaagttgagaccattcgccatttc
gaccctgaaacccagcgttcgttacatcctgttgagtccattcgcctattaccggcaaag
gagtttccgaccgacagcgccgccattgaaggatttagacaaagataccgccgccgtttt
gaagtgatagtcaaagagcctgaatcggtttaccaattggtgagtcgtaatctcatgccc
gcagggattgaaaattacctgccactgttttttgatgaagtcgccaccctatttgagtac
ttacccaaggagactcaacttgtcacccttggggatattgaaaaatccgcccgagcccat
ttacaggaagtcgaaacccgctaccaagacagacgtgtcgatccactgcggccactgctc
gcgcctaaagaactgtatttactgattgaagagctatttgcggcatttaaaccactgccg
cgctatcagtttatttcgcccactaccgagtcggtagagacaggtaaagccacagttatc
gatgctaatcaacttcccgatatcagtgcgaatcacaaattaaagcaaccattactcgca
ttacaagattacgcgcaaaatgcaccgcggatgctatttagcgccgagtctgaaggacgg
cgcgaagccctgcttgaactcttaagtaaaatccaacttaaacccgcattattcagccat
tttgatgaatttattcaaagtgatgccaaactggggcttatcgtttcgccactatcacgc
ggctgtttacttaagctcagtccaaaagatgccgtgagcattatttgtgagacagaactt
tttggtcaccgtatctcccagcagcggcgccgggaaaaacaacgtcagatcagcaatgat
gccctgattaaaaacttagccgaactaaaagtcggtcaacccatagtgcaccttgaacac
ggcgtggcgctataccaaggcttagtgaccttagacacgggcggtttagttgccgaatac
ctgcaattagaatacgcaggtggcgataaactctatgtacccgtatcgaacttacacctg
atcagccgttacagtgttggtgcagatgaagacgcccatctcaataaacttggcaacgag
acgtgggccaaagccaagaacaaagccatagagaaaatccgcgatgtggcagcagaactg
cttgatgtttacgcccgtcgccaagcgcgtcccggcgaaagttgccagattgacgaagag
gaatatgcccaatttgcccaagggttcccttttgaagaaaccgtcgatcaagaaagtgct
atccatgccgtattagcggacatgcgttccccaattgccatggacagacttgtatgtggt
gacgtgggctttggtaaaacggaagtcgcaatgcgcgcagcctttgtggccgtcaacgca
ggtaaacaagtagttgtactggtgcccaccacactgcttgcccagcaacactatgaaaac
tttaaggatagattcgccgattggcccgttgtcacagaggtgatgtcgcgatttagaacg
gcaaaagaacaaacccaagtgctcaagcagcttgaagaaggtaaagtcgatatcgttatc
ggcacccataagttactgcaatctgaagctaaatttgaaaatctcggcttactgatcatt
gatgaagaacacagattcggtgtacgccaaaaagaaaaaattaaggcgctgcgggccaat
gtggatattttaaccctcacagcaacccccattccgcgaaccttaaatatggccatgtcg
ggcatgcgtgatttatccattatcgccaccccacccgctaaacgcttagcagtaaaaacc
tttgtacgcgaatccgatctcgcaaccgtgcgcgaagccattctgcgggaaattctgcgt
ggtggccaagtctattatctgcataacaatgtcgaaagcattgaaaaatgtgcccaaggg
attatcgacttagtgcctgaagctcgcgttgtcgtcgcccatggtcaaatgcgtgaacgg
gatcttgagcgagtcatgtctgacttttatcatcaaagattcaacgtgttagtctgcact
actattatcgaaaccgggattgacgtccccagcgcaaacaccattattattgagcgtgcc
gatacctttggtctggcacaattacaccaactgcgtggtcgcgtaggccgctcacatcat
caagcctatgcttatttgatgacaccacaccccaaacgcatgacaagtgatgcccgtaaa
cgccttgaagccattgatgcactagaagatcttggtgctggctttatgctcgcaacccaa
gatttagagatccgcggtgcgggagaactccttggggacgagcaaagcggccatatttcc
aaaataggttttagcttgtacatggaaatgcttgaagcggcagtcaaagccttaaaacaa
ggcaaagagccatcgcttgcgcaaatgctcaaccagcaatgtgaaatcgaactgaggatc
ccagcgctattgcctgaggcctatgtgagcgacgtgaatattcgcctatccttatataaa
cgcattgcaggctgtgaaacccaagaggcactcgatgaattaaaagtcgaattaattgat
cgctttggcttactgccagagccgaccaaaaacctaatggaaatgacgctctataaacat
caggcaactcgcctaggtgcaactaaaattgaagtgcataccaagggcggcagtattgaa
tttagtcatgatcatgtgatcgacccaggttttattattggattactccaaagccagcca
caaatctatcgaatggaaggaccgaataagttaaagttcagtcttactgctgaaacagcc
aaagatagactcgatgtagtcaaactcttgcttgaacaattattgcaacatcgtcttgga
gataaatag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (16)   

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