KEGG   Treponema denticola: TDE_1287
Entry
TDE_1287          CDS       T00157                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
tde  Treponema denticola
Pathway
tde03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    TDE_1287 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tde03400]
    TDE_1287 (mfd)
Enzymes [BR:tde01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     TDE_1287 (mfd)
DNA repair and recombination proteins [BR:tde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      TDE_1287 (mfd)
SSDB
Motif
Pfam: Helicase_C DEAD TRCF CarD_TRCF_RID UvrB_inter ResIII Cas3-like_C_2 RecG_dom3_C IstB_IS21 ERCC3_RAD25_C UB2H
Other DBs
NCBI-ProteinID: AAS11805
UniProt: Q73N68
Position
1322878..1326345
AA seq 1155 aa
MPQPLIDSLQSSIRSWKDMKNAFDEIDENSYPYNITGISGGLFGFFLTEYLYKTRKPVLV
VVPTEKEAEAVRADLDFSGIENFVLPWWGSLAYRPISPTAPVFSERAEVLIRLLESGNES
YTKNKPPVFITCQRSFLTPVPPADYLKQNKVEIAAGSSLDILSLAELLSLWGYIRVPRVS
VRGEFALRGEVLDICLASNSGSEKTAYRIQFDFDKVEKIKSFDIASQGSLEEYKKINFYP
VKEVIWNDERIDCLEKNLKTYSEFSENILKIIDALKEYKTFEGEEIFYPLAFQKSSSVLE
YAELNDIPVFYSDYDRQKNSSEILLREYMGLYKKTKTQFDENEKRKALISEYPEPQRILL
QFESNVQKYNKSIYFRTLAEQEDKNKTLKFKTDPPRSFFGNIVYLREELNNLLNDDWSIF
VFAESDNQALRIEEILHEDRIKILPYNLSGGFGIPDLKILVIHENEIFGRRRRIPKSVKT
AKSSVIDTFIELNPGDYVVHVNYGIGKFRGIERVKILDTERDYINLLYANDETVFIPIEQ
ADLVQRYIGNEGEAPHLDILGSKSWENRKNKVKKSVEDIAAKLIDLYSKRKASTGFAFQK
DDEWQTAFEAAFPYEETDDQLTCIAEVKEDMEKPVPMDRLICGDVGYGKTEVAMRAAFKA
VMSGKQVAFLSPTTILTEQHFETLDKRFKNFPVKLARLSRFVPKGEQKKVLEKLKKGEVD
ILIGTHRIIQKDVVFKDLGLMIVDEEQRFGVKDKERLKQMKHNVDCLSLSATPIPRTLHM
SLLKIRDMSVIATPPQNRKPVETVIAEFNAEKVAEVIRRESERGGQVFYLHNRVESLDET
LFMLQSLLPEIMIETAHGQMSPNQLEEIFERFSLGGFQVLIATTIIENGIDIPNANTIII
DRADMYGVSQLYQLRGRVGRSDKKAYAYLLYPDDKALSEIAMKRLQVISDFTELGSGFKI
AMKDMEIRGAGNLLGREQSGDIYSVGFDLYLRLLDEAVQKLKNQDYEPVQESVIELEYSG
FIPDSYISSPETKMEVYKKIAAVKVQGDLDRVYSEILDRFGPAPSEVESLLALSEIKIIC
NHLSIASLKERKAAVRIEFARVSKISVDKLLRMIKESAGRVSLDPKAPNVLILQTGKIGL
KEKSEFIREKLGSLM
NT seq 3468 nt   +upstreamnt  +downstreamnt
atgcctcagcctctaatagattccttacaaagttctatccgctcatggaaggacatgaaa
aatgccttcgatgagatagatgaaaattcttatccctacaacattacaggaatttccgga
ggccttttcggattttttttaacggaatatttatacaaaacccgtaagcctgtcctcgtg
gttgttccgactgaaaaggaagcggaagccgtaagagccgacttggatttttccggaata
gaaaattttgtattgccttggtggggctctcttgcctataggcctatttcgccgacagcc
cccgttttttccgaacgagccgaagtgctgatccgcctgcttgagtccgggaatgaatcc
tatacaaaaaacaaacctccggtttttattacctgccagcgttcctttttaactccggtt
cctccggcagattatttaaaacaaaacaaggtagaaattgctgcaggttcaagccttgat
attttaagccttgcagagcttttaagtctttggggttatataagagttccgcgtgtaagc
gtgagaggcgagtttgctctgaggggagaggtcttggatatctgccttgcttccaattcg
ggttctgaaaaaacggcttatcgaattcaatttgattttgataaggtagaaaaaataaag
agctttgatatagcaagccaaggttctttagaggaatataaaaaaattaacttctatccc
gtaaaggaagtaatttggaatgatgagcgtattgactgcttggaaaaaaatttaaaaacc
tattcggaattttctgaaaatattttaaaaattattgatgccttaaaagaatataaaacc
tttgaaggagaagaaattttttatcctcttgcgtttcaaaaatcttcttccgttttggaa
tatgcggaattaaatgatattcctgttttttattcggactatgacagacaaaaaaattct
tcggaaattttacttagagaatatatggggctttataaaaaaacaaaaactcaatttgac
gaaaacgaaaaacgaaaagctcttatttcggaatatcccgaacctcaacgcatcttactt
caatttgaaagcaatgtacaaaaatataataagtcgatttattttagaaccttagccgag
caagaagataaaaataaaactcttaaatttaaaaccgatccgccccgcagttttttcggg
aatatagtttatttacgcgaagaattaaataatcttttaaatgatgattggtctatcttc
gtatttgccgaaagcgataatcaggctctccgtatcgaagagattctgcacgaagacaga
ataaaaattttaccttataacctttcaggcggcttcggtattcctgatctaaaaattttg
gtaatccatgaaaacgaaattttcggtcgccgccgaagaattccaaaatctgtaaagacc
gcaaagagttcggttatcgataccttcatcgaattaaatccgggagactatgttgttcat
gtaaattacggcataggaaaattccgcggtatcgaacgcgttaaaattttggatacggaa
agggattatataaatcttttatatgcaaatgatgaaaccgtttttattccgattgagcag
gccgaccttgttcagcgttatataggaaacgaaggagaggctcctcatctcgatatcctc
ggctccaaatcttgggagaacagaaagaacaaggtaaaaaaatcggttgaagatatagcc
gcaaaacttatagacctttattctaaaagaaaggcaagtacgggctttgcttttcaaaaa
gatgatgaatggcagacagcttttgaagcggcttttccttatgaagaaaccgatgaccag
cttacctgtatcgccgaggtaaaggaagatatggaaaagcctgttcccatggataggctt
atctgcggagatgtaggttacggtaaaaccgaagttgcaatgcgggctgcctttaaggcc
gttatgagcggtaagcaggttgcctttttgtcgcctacaactattttgaccgagcagcat
tttgaaaccttggacaagaggtttaaaaacttccccgtaaaattagcccgtctttcccgc
tttgttccaaagggtgaacaaaaaaaagttttggaaaaattaaaaaaaggcgaagtggat
attttaatcggaactcatcgcataattcaaaaagatgttgtctttaaggatttgggtttg
atgattgtcgatgaagaacaacgcttcggtgttaaggataaggaaagattaaaacagatg
aagcacaatgtggactgtctttccctttctgcaactcccattccgcgaacccttcacatg
tcgcttttaaaaataagggacatgagcgtaattgcaactcctcctcaaaacagaaaacct
gttgaaacggttatcgccgagttcaatgcggaaaaagttgccgaagttataagacgggaa
tcggagagaggcgggcaggttttttatcttcataacagggttgaaagtttagatgaaact
ctttttatgcttcaatctcttttgcctgagattatgattgaaacggcacacggccaaatg
tctcctaaccaactggaagaaatttttgagcgctttagtttgggcggttttcaggtttta
attgcaaccaccattatcgaaaacggcattgacattccgaatgccaataccatcatcata
gaccgagccgacatgtacggcgtttcccagctttatcagttgaggggaagggtaggccgc
tctgacaaaaaggcctatgcctatctattgtatcctgacgataaggctctttccgaaatt
gctatgaagaggcttcaagttatttcagactttaccgagctcggttcaggttttaagatt
gcgatgaaggatatggaaataagaggagccggaaatcttttgggcagggaacaatctgga
gatatttattccgtaggctttgatttatatttgcgtcttttggacgaggctgttcaaaaa
ctgaaaaaccaagattatgagcctgttcaagaatccgttatcgagcttgagtattcgggt
tttattcccgattcctatatttcaagccccgaaaccaaaatggaagtttataaaaaaatt
gcagccgttaaggtgcagggagacctcgacagggtttactccgaaatccttgaccgcttc
ggtcctgcaccttccgaggtggaaagtcttttggctctttccgaaataaaaattatctgt
aatcatctttcgattgcaagcctaaaagaaagaaaggctgccgtccgcatagagtttgcc
cgtgtatcaaaaatctcggtggataaacttttgcgtatgataaaagaatccgcaggccgt
gtaagccttgacccaaaagctccgaatgtcctcatcctccaaaccggcaaaatcggctta
aaagaaaaaagcgaattcatccgcgaaaagctcggcagcttgatgtag

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (13)   

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