KEGG   Thunnus thynnus (Atlantic bluefin tuna): 137189324
Entry
137189324         CDS       T11154                                 
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
tty  Thunnus thynnus (Atlantic bluefin tuna)
Pathway
tty04010  MAPK signaling pathway
tty04020  Calcium signaling pathway
tty04510  Focal adhesion
tty04518  Integrin signaling
tty04519  Cadherin signaling
tty04540  Gap junction
tty04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:tty00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    137189324 (pdgfrb)
   04020 Calcium signaling pathway
    137189324 (pdgfrb)
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    137189324 (pdgfrb)
   04519 Cadherin signaling
    137189324 (pdgfrb)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    137189324 (pdgfrb)
   04540 Gap junction
    137189324 (pdgfrb)
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    137189324 (pdgfrb)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:tty01001]
    137189324 (pdgfrb)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:tty04090]
    137189324 (pdgfrb)
Enzymes [BR:tty01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     137189324 (pdgfrb)
Protein kinases [BR:tty01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   137189324 (pdgfrb)
CD molecules [BR:tty04090]
 Proteins
  137189324 (pdgfrb)
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Ig_PDGFR_d4 Pkinase I-set Ig_3 Ig_2 VEGFR1-3_N_Ig-like ig Ig_VEGFR-1-like_5th V-set C2-set_2 Ig_MYOM1 Adeno_E3_CR1 RIFIN VEGFR-1-like_Ig-like
Other DBs
NCBI-GeneID: 137189324
NCBI-ProteinID: XP_067455210
Position
9:complement(15291783..15322586)
AA seq 1099 aa
MRSVTICTLHLAVTVTALLYLCTESCCLEISPGDRELVLAEGSHLTLFCSGSEKATWVFK
RNDVTTYFVKPDDSSYEIKKINTTSSVLNVWNLSWKNTGVYQCSDEHTGETKEVAVFVPD
RDVWFIENSHGMVTKTSEESTIPCVVTNPNISVTLYDRDTDVPVKGVYVPTEGYKARLED
RTYICRGELNGEIRESQAFYVFSVVVPETIDAYVNASKTVLKKGEPLTVNCTVHGVELVF
FSWDYPNKEVVEVEPLTDVLTATIMRSCLIFPQAQMVNSGIYACHVQEGVLDQTASASIN
ITVLERGFVDMRPAQRQNITAKLQENVELRVEIEAYPPPQVSWSKDGTTIKGDKTITTRQ
EHEIRYVSILTLVRVRTEQKGLYTVLVTNGDDTKEVTFDLEVQVPSQIKDLTDHHLPGKR
HLVTCLAEGVPTPTIQWYSCDSMLKCSNQTAIWHPLIPEPEVLSIQTNVSHSETRKISQV
RSRLTFHKPQQVTVRCETSNQAGLVDRRDVKLVSSTLFSQVAVLAAVLALVVIVIMSIII
LIAVWRKKPRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMPRDNLVLGRTLGSGAF
GRVVEATAYGLTHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGAC
TKHGPLYLVTEYCRYGDLVDYLHRNKHTFLQYYAEKNQDDSCLISAGSTPLSQRKGYVSF
GSESDGGYMDMSKDEPSVYVPMQEQIDTIKYADIQPSPYESPYQQDLYQEQVGGRLDLVI
SDSSTLTYDDLLGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIM
HDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNEL
FYSALKRGYRMTKPAHASDEVYEIMKKCWDEKFEKRPEFSFLVHSVGNMLTESYKKRYSQ
VNDNFLKSDHPAVARTKPRLSSPFPIANPAFGSPSPVNLSFPADPYDQSSSPRDFRQEAD
TQEVITSYNEYIIPIPDPKPEEAFTEESPASSLALEEETDSMSQDTADTLPEEDRLEETS
ERDALLGSSGTPEEEDSFL
NT seq 3300 nt   +upstreamnt  +downstreamnt
atgagaagtgtgaccatctgcacgctccatctggccgtcacagttacagctcttctgtat
ctctgcactgagtcatgttgcctggagatctcacctggcgacagagagctcgtcctggct
gagggctcccatctcactcttttctgctccggctcagaaaaggcaacctgggtatttaag
aggaacgacgtgacaacttattttgtgaaaccagatgacagcagctacgaaatcaagaaa
atcaacaccacgtctagcgttttgaacgtgtggaacttgagctggaagaacacaggggtg
tatcagtgcagtgatgaacacactggagaaacaaaggaggtggctgtttttgtcccagac
cgtgatgtgtggttcattgaaaactctcatggcatggtaacaaagaccagtgaggaaagc
accatcccctgtgtggtcaccaacccaaacatcagtgtcaccctgtatgacagggacact
gatgtccccgtcaagggtgtgtatgttcctactgaggggtacaaagcacggctggaggac
aggacctacatttgtcgtggagagctgaacggtgaaattagagagtctcaggccttctac
gtcttcagtgttgttgtcccagagaccattgacgcctacgttaacgcatcaaagaccgtc
ctgaagaagggagaaccgctgacagtaaactgcacagtgcatggagtggagctggtgttt
ttctcctgggattaccccaacaaagaggttgttgaagttgagccgctgacagatgtcctg
accgccactatcatgcgctcttgcctgatattccctcaagctcaaatggtcaacagcgga
atctacgcctgccatgtccaagagggtgtcctagaccagactgcctctgccagcatcaac
atcactgtgctcgagcgaggttttgtggatatgaggcctgctcagcgacaaaacattaca
gccaagttgcaagagaacgtggagctgagagtggagattgaggcctaccctccccctcag
gttagctggagcaaagacggcaccaccatcaagggagacaaaaccatcacaaccagacaa
gagcatgagattaggtatgtcagtattctcactttggtgagagtgaggacggagcagaaa
ggcctctacaccgtccttgtcaccaacggagatgacacaaaggaagtgacctttgacctg
gaggtccaagttccctctcagattaaagacctgactgaccaccacctccctgggaagaga
cacttggtgacctgcctagctgagggggtcccaaccccgaccatacagtggtacagctgt
gacagcatgctcaagtgtagcaaccagacagcgatatggcaccccttgataccagagcca
gaggtgctgagcatccagacaaacgtcagccacagcgagactcgtaaaatcagccaggtg
cggagccgcttgaccttccacaagccccagcaggtcacagttcgctgtgaaaccagcaac
caggcagggctcgtcgacaggagagacgtcaaactggtgtccagcactctgttctcccag
gtggcagtattggctgcagttctagccttagtggtcatcgtcatcatgtctatcatcatc
ctcatcgctgtgtggagaaagaaacctcggtatgagatcagatggaaggtgatagagtct
gtgagccaggacggtcatgagtacatctatgtggaccctatccacctgccctatgacctg
gcctgggaaatgccccgagacaacctggtgctgggtcgcactcttggatcaggagccttt
ggcagggtggtcgaggcaactgcatatggtctcacccattcccagtccagcacaaaagtg
gcagtgaaaatgctgaaatctacagccaggaggagtgagactcaggctctgatgtcagag
ttgaagatcatgagtcacctgggtcctcacctcaacattgtgaacttgctgggagcttgc
accaaacatggtcctctttacctggtgactgagtactgtcgctatggtgacctggtggac
tacctgcacaggaacaagcacaccttcctgcagtactacgcagagaagaaccaagacgac
agctgccttatctcagcaggaagcactccgctcagccagaggaaaggctatgtgtctttc
ggaagtgagagtgatggaggatacatggacatgagtaaagatgagccctcagtctacgtg
cccatgcaggagcaaatagacaccatcaagtatgcagacatccagccctctccatatgag
tcaccctaccagcaggacctctaccaggaacaagttggcggcagattggacctggtcatc
agcgattcttccacgctcacctacgatgatctgctgggcttcagctaccaagtggcaaag
gggatggagttcctcgcctccaagaattgcgttcatcgtgacctcgctgccaggaacgtg
ttgatctgtgagggcaaactggtgaagatctgcgactttggcctggccagagacatcatg
catgattccaactacatctccaaaggcagcaccttcctgcccctgaagtggatggcacca
gaaagtattttccataatttgtacacaaccctgagcgatgtgtggtcatacggcatcctt
ctttgggaaattttcacactgggaggaacgccctaccccgatctgcccatgaatgagttg
ttctacagcgctttgaagagaggctaccgaatgacaaaacccgcccacgcctccgatgaa
gtttatgaaatcatgaagaagtgctgggatgagaagttcgagaagaggcctgagttctcc
tttcttgtgcacagcgtggggaatatgctgacggaaagctacaaaaagagatacagccaa
gtcaacgacaacttcctgaaaagtgaccatccggcagtcgcccgcaccaagccccgactc
tcctcaccttttccaattgccaatccagctttcggctccccctcacccgtcaacctctcc
ttccctgcggacccctatgaccagagctccagccccagagacttcagacaagaggcagac
acacaggaagtcataacttcatacaatgagtacatcatccccatcccagaccctaagcca
gaggaagccttcactgaggaaagtcctgcaagctctcttgctctggaggaggagaccgac
tccatgtcgcaagacacggctgacacccttccagaggaggacaggctggaggagaccagc
gagagagacgctctgctgggctcctccggaacgcctgaggaggaagacagcttcctgtag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (19)   

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