KEGG   Trichosurus vulpecula (common brushtail): 118846494
Entry
118846494         CDS       T10126                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
tvp  Trichosurus vulpecula (common brushtail)
Pathway
tvp04151  PI3K-Akt signaling pathway
tvp04382  Cornified envelope formation
tvp04510  Focal adhesion
tvp04512  ECM-receptor interaction
tvp04820  Cytoskeleton in muscle cells
tvp04926  Relaxin signaling pathway
tvp04933  AGE-RAGE signaling pathway in diabetic complications
tvp04974  Protein digestion and absorption
tvp05146  Amoebiasis
tvp05165  Human papillomavirus infection
tvp05200  Pathways in cancer
tvp05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:tvp00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    118846494 (COL4A1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    118846494 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    118846494 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    118846494 (COL4A1)
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    118846494 (COL4A1)
  09154 Digestive system
   04974 Protein digestion and absorption
    118846494 (COL4A1)
  09158 Development and regeneration
   04382 Cornified envelope formation
    118846494 (COL4A1)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    118846494 (COL4A1)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    118846494 (COL4A1)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    118846494 (COL4A1)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    118846494 (COL4A1)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    118846494 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tvp04147]
    118846494 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:tvp00536]
    118846494 (COL4A1)
Exosome [BR:tvp04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   118846494 (COL4A1)
Glycosaminoglycan binding proteins [BR:tvp00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   118846494 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 118846494
NCBI-ProteinID: XP_036611002
Position
4:complement(386578323..386826200)
AA seq 1668 aa
MSPRPVVWLLLLLTALLLNEERSKAAAKGCSGSGCGKCDCHGVKGQKGERGLPGLQGVIG
FPGMQGPEGPHGPPGNKGDAGEPGLPGTKGTRGPPGSSGYPGNPGLPGIPGQDGPPGPPG
IPGCNGTKGDRGPVGPPGLPGFSGITGPPGAPGMKGDPGEILSLIPGMPLKGERGFPGPP
GPVGPRGNPGSPGMDGPPGYSGPPGPPGPPGLPGEKGQMGLSFQGPKGDKGEQGVSGPPG
EPGQAQIGKKGDFATQGPKGDKGERGHPGAPGEREKGEPGKPGPRGKPGKDGEKGEKGSL
GFTGDPGFPGLPGRDGAKGDKGQAGPPGLPGPVISTQPGGEKGEKGYPGAPGLKGEPGQK
GYQGIPGLPGPPGFTSTGLIGAPGFPGERGEKGDQGPPGQSLPGTSGRDGFPGPPGPPGP
PGSPGHTNGIVECQPGPPGDQGPPGHAGLPGLTGEMGEKGEKGQGCLTCDIDGLPGLPGP
QGPPGEIGFPGQPGAKGDRGLPGHNGLEGMPGPPGLPGLRGEPGAKGEPGDIYFDAKLKG
DKGEPGFPGQPGAPGRAGTPGRDGHPGLQGPKGSPGSIGLKGERGLPGGVGFPGSRGDIG
PPGPPGFGLPGPVGDKGQAGFPGSPGSPGLPGPKGEAGRVVPLPGPPGAEGLPGPPGFPG
PQGDRGFPGSPGRQGPPGEKGAVGQPGIGFPGPPGPKGVDGLPGAIGQPGNPGRPGFDGL
PGNPGVPGQKGEPGVGLPGPKGSAGLPGIPGLPGEKGNVGGPGIPGEHGLIGPPGLQGLR
GDPGLQGIQGPKGAPGVPGIGPPGVMGPPGGQGPPGLAGPPGIKGEKGYPGFPGSDMPGP
KGDKGSPGLPGLTGQIGLPGPPGTQGAPGLPGFPGPKGEMGVMGTPGQPGPPGPAGTPGF
QGVKGDQGFPGTTGPRGDPGFKGDKGDAGLPGQPGSMDKVDMDSMKGQKGDQGEKGQTGP
VGDKGARGDPGTPGVPGKDGQAGTPGQPGPKGDPGLGGSPGAPGLPGPKGSVGGMGLPGS
PGEKGAQGIPGSQGIPGFPGLKGEKGVKGEAGRPGIGTPGLPGEKGDPGPSGFPGRPGEK
GEKGSPGMPGMPGPPGPGGLPGNVGYPGSPGIPGEKGDKGLPGLDGVPGVKGDAGQPGLP
GPAGPGGQKGEPGGDGIPGSAGEKGEPGLPGRGLPGFPGSKGDKGSKGELGFPGSAGSPG
IPGPKGEPGFMGPPGPPGQQGLPGVPGRAVEGPKGDRGPQGQPGIPGVPGPMGPPGLPGL
DGAKGEKGNPGWPGTPGAPGAKGDPGFQGMPGIGGTPGITGSKGDMGPPGVPGFQGAKGS
PGIQGLKGDQGDQGFPGSKGLPGPPGPPGPYSLIKGEPGIPGPEGPAGLKGLPGPPGPKG
QQGVTGSTGIPGPPGNPGFDGAPGQKGEPGPFGPPGPKGHPGPPGPDGLPGSMGPPGTPS
VDHGFLVTRHSQTIDDPQCPPGTKIIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMP
FLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPISGENIRPFISRCAVCEAPAMVMAVH
SQTIQIPQCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT
CNYYANAYSFWLATIERNEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq 5007 nt   +upstreamnt  +downstreamnt
atgagtccacggccggttgtttggctgctgctgctgctgactgccctcctgctcaacgag
gagcggagcaaagcagctgcaaagggttgttctggttctggctgtggaaaatgtgactgc
catggagtgaaaggccaaaagggtgaacgaggtcttccaggattacaaggtgtcattggg
tttcccggaatgcaagggcctgaaggtccacatgggcctccgggtaataagggggatgct
ggagaaccaggactaccaggaacaaaaggaacaagagggccaccaggctcatctggttat
cctggaaaccctggacttcctggtatcccaggccaagatggtccacctggtcctcctggt
atcccaggatgcaatggtacaaagggtgatagaggtccagtgggtcctcctggtttgcct
ggattttctggaataacaggcccccctggagctccaggaatgaagggagacccaggtgaa
atccttagtctaatcccaggcatgccgttgaaaggtgaaaggggatttcctggaccccct
ggaccagtgggaccaagaggaaatccagggtcaccaggcatggatggtccaccagggtat
tcgggaccacctggtccaccaggtcctccaggacttccaggtgaaaagggtcaaatgggt
ttgagttttcaaggacccaaaggtgacaagggtgagcaaggtgttagtggacctccaggt
gaaccaggacaagctcaaataggaaaaaagggagattttgctactcaaggaccaaaaggt
gacaaaggagaacgtggacatccgggagcaccaggtgaaagagagaaaggtgaacctggt
aaaccagggcctcgagggaaacctggaaaggatggtgaaaaaggagaaaaggggagtcta
ggttttacaggtgatccaggattcccgggattaccaggcagagacggtgctaagggagac
aaaggacaagcaggccctccaggcttaccaggccctgtgataagcacacaaccagggggt
gaaaaaggagagaagggatatccaggtgctccaggattaaaaggcgaaccgggtcaaaaa
ggttaccaaggtattccaggcctaccaggtcctccaggttttaccagcacagggctaatt
ggtgctcctggctttcctggagaaagaggagaaaagggtgaccaaggtcccccaggacaa
tcattgcctggaacaagtggaagagatgggttcccaggacctccggggccccctgggcct
cctggctcaccaggccatacaaatggaatagtagaatgccagcctggaccacctggagat
caaggtccacctggacatgctgggctcccaggattgacaggggagatgggagagaaaggt
gagaaaggtcaaggttgcctaacctgtgatatagatggactgcctggacttccaggtcca
caaggaccaccaggggaaataggttttccaggacagcccggtgccaagggagacagaggt
ttacctggacataatggtcttgaagggatgcctgggcctccaggtttgccaggactgagg
ggtgaaccaggagcaaagggagaacctggagatatttattttgatgcaaaactcaaaggt
gacaagggagagccaggttttccaggacaaccaggtgcccctggaagggcaggaacacct
ggaagagatggccatcctggtcttcagggccccaaaggctcaccgggttcaataggacta
aaaggagaacgtggtctccctggaggagttggatttcctgggagtcgtggcgacataggc
cctcctggcccaccaggatttggcctacctggtccagttggtgacaaaggacaagcgggt
tttccaggaagccctgggtcaccaggcctcccaggtcctaagggtgaagcaggaagagtg
gttcctctacctggtcccccgggggcagaaggacttccaggacccccaggtttcccagga
ccccaaggtgacagaggttttcctggcagcccaggaagacaaggacctccaggagaaaaa
ggtgctgttggccaaccaggaataggctttccaggacccccagggccaaaaggtgttgat
ggcttacctggagctataggtcagcctggaaatccaggtcgtccaggatttgatggttta
ccaggaaatccaggtgttccaggccaaaaaggtgagcctggagtgggtctaccaggtccc
aaaggatcagcaggtcttcccggcattccaggccttcctggtgaaaagggaaatgttggt
ggaccaggcatcccaggagaacatggacttataggaccacctggcctacaaggactcaga
ggtgacccagggctacaaggaatccaaggcccaaaaggtgcccctggtgttccaggaata
ggccctcctggagttatgggacccccaggaggacaggggccaccaggattagcaggtcct
cctggaatcaaaggagagaaaggttaccctggattcccaggctcagatatgccaggaccc
aaaggagataaaggaagtccaggtcttcctggtttaacaggccagataggattacctggg
cctcctggcacacaaggggctcctggacttccaggctttccaggtcccaagggagaaatg
ggagtaatgggaacccctggtcagccaggtcctcctggaccagcaggtactccaggattc
caaggagtcaaaggggaccaaggtttcccaggtacaacaggacccaggggtgatccaggt
ttcaaaggtgataaaggtgatgctggtctccctggacagccaggatcaatggataaagtg
gacatggatagtatgaagggccagaaaggagatcaaggagaaaaaggacaaacgggacct
gttggagataaaggggccagaggagatcctggcactccaggagtacctgggaaagatgga
caagcaggaactcccggccagccaggtcctaaaggtgatccaggtcttgggggatcacca
ggtgctccaggactaccaggaccaaagggttctgtgggtggaatgggcttgccagggtca
cctggagaaaaaggagcccaaggaatcccaggctctcagggtatcccaggcttccctgga
ttaaaaggagaaaagggagtgaaaggagaagcgggtcgcccaggcattgggactcctgga
cttcctggtgaaaagggagaccctggaccttcaggttttccaggaaggcctggagagaag
ggagaaaaaggaagtccagggatgccagggatgcctggtcctccgggtcctggaggatta
cctgggaatgtaggctatccagggagccctggaatacctggagagaagggtgacaaagga
cttcctggtttggatggtgttcctggagttaaaggagacgcaggtcagcctggccttcca
ggtccagcaggtccaggtggccaaaaaggtgaaccaggaggtgatggcattccaggatca
gctggtgagaagggtgaaccaggtcttccaggaagaggacttccaggatttccaggttcc
aaaggagacaaaggttccaagggcgagttgggtttcccaggatcagcaggaagtccagga
attcctggacctaaaggagaaccaggatttatgggtcctccgggtcctccagggcaacag
ggattacctggagtacctggccgagcagtggagggtcctaaaggagacaggggtccacaa
ggtcaacctggcatacctggtgttcctggacccatgggtcctccaggccttccaggactt
gatggagcaaaaggagaaaaagggaatccaggttggccaggaaccccaggtgccccaggt
gctaagggagacccaggatttcagggaatgcctggtattggtggtacaccaggaatcact
ggttctaagggtgatatgggacctccaggtgttccaggatttcaaggtgccaaaggttct
cctggcattcagggactcaaaggagaccaaggagatcagggattcccaggttcaaaaggt
cttccaggaccacctggtcccccaggtccttacagcctaatcaaaggagagccaggtatc
cctggtcctgaggggccagcagggcttaaaggccttccaggccctccaggccctaaagga
caacaaggtgtaacgggatctacgggtattcctggaccacctggtaacccagggtttgat
ggtgcacctgggcaaaaaggagaaccaggcccttttggtcctcctggtccaaaaggacat
cctggtccaccaggtccagatgggctgccaggttcaatgggtcctccgggtaccccctct
gtagatcatggattccttgttactaggcatagtcaaactatagatgatccacagtgtccc
cctggcaccaaaataatctaccatggctattccttgctctacgtacaaggaaatgaacga
gcacatggccaggacttgggtacggctggaagttgtctacgcaaattcagtaccatgcca
ttccttttctgcaatattaacaatgtttgcaacttcgcatcaagaaatgactactcctat
tggttgtctactcctgagcccatgccaatgtctatggcacccatttccggtgaaaacatt
aggccatttattagtagatgtgctgtatgtgaggctcccgccatggtgatggcagtccac
agccaaacaatccaaataccacagtgccctaatggatggtcatccctttggattggctat
tcttttgttatgcacaccagcgctggtgccgaaggttctggccaagccctagcatcccct
ggttcctgtcttgaagaatttagaagtgcacccttcattgaatgccacggtcgtgggact
tgtaattattatgcaaacgcttatagcttctggcttgctactatagaaagaaatgagatg
ttcaagaagcctactccatcgactttgaaagcaggagaactgcgcacacacgttagccgc
tgccaagtctgtatgagaagaacataa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (6)   

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