KEGG   Thalassospira xiamenensis: TH3_10245
Entry
TH3_10245         CDS       T03639                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
txi  Thalassospira xiamenensis
Pathway
txi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:txi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TH3_10245
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:txi03019]
    TH3_10245
   03400 DNA repair and recombination proteins [BR:txi03400]
    TH3_10245
Enzymes [BR:txi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     TH3_10245
Messenger RNA biogenesis [BR:txi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     TH3_10245
DNA repair and recombination proteins [BR:txi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      TH3_10245
SSDB
Motif
Pfam: RQC DEAD HRDC RecQ_Zn_bind Helicase_C ResIII
Other DBs
NCBI-ProteinID: AJD52165
UniProt: A0AB72UD21
Position
2190984..2192834
AA seq 616 aa
MPDTAPLPDLLDRPAQRLPIDVLREVFGYDSFRGQQAEIIDHVIAGNDALVLMPTGGGKS
LCYQIPALCRSGTAIVVSPLIALMKDQVDALSQLGVKAAFINSTLSPDAAREIETRAIDG
DIDLLYVAPERFATDRFLNLLDRISISLFAIDEAHCVSQWGHDFRPEYRRLDLLPTRFPH
VPRVALTATADTPTRKDIAENLHLTNAQCFLTGFDRPNITYRIETKGNSKQRLLSFLNRE
HPEDAGIVYCLSRRKTEDVAQWLTDNGRPALPYHAGLTQETRQLHQDRFLREDGLIICAT
VAFGMGIDKPNVRFVAHLNLPKSMEAYYQETGRAGRDGLPANAWMNYDLSDIVSIRSMLA
SSDAPDSQKRIESRKLDALVGLAETTRCRRQVILSYFGEEDTKPCGNCDTCLEPVDTWDA
TEASRKALSAVYRTGQRFGPAHIIEVLMGRKTEKIRQNSHDDLSVYGIGKDVSQPQWRSV
FRQLLAMGYLQVDVEGHGGVYLTEESRPVLRGEKVVEMRKDPGESKRTMTKRLRDFDTEF
ENEEDRDLWERLRTLRHELATSQNVPPYVIFSDRTLWEMVRFKPRTLQDMASINGVGVKK
LDQYGLVFLDVMDGRR
NT seq 1851 nt   +upstreamnt  +downstreamnt
ttgcccgatacagcaccactacccgacctgctcgaccgacctgcgcaacgtctgccgatt
gacgtcctgcgggaagtttttggctatgacagttttcgcggtcagcaggccgaaatcatc
gatcatgtgattgccggaaacgatgcactggtcctgatgccgaccggtggcggcaaatct
ttgtgttatcagatccctgccctttgtcgttcgggaacggcaattgttgtatcgcccctg
attgccttgatgaaggatcaggtcgatgcgctaagccagcttggcgtcaaggcggccttt
atcaattcaacactttccccggacgcggcgcgcgaaatcgaaacccgcgcaattgatggc
gatatcgatctgctttatgtcgccccggaacggtttgcgacggatcgttttctgaacctg
cttgaccggatcagcatatcgctgtttgccattgacgaagcacactgtgtttcgcaatgg
gggcatgatttccgcccggaataccgtcggcttgaccttctgccaacgcgtttcccgcat
gtgccgcgggttgccttgaccgcaactgcggacacgccaacccgcaaggacattgccgaa
aacctgcatctgacaaatgcgcaatgcttcctgaccggctttgaccgcccgaacattacc
tatcggatcgaaacaaagggcaattcaaagcagcgccttctgtcgtttctgaaccgtgag
catcccgaagatgccgggattgtctattgcctgtcgcgtcgcaagaccgaggatgtcgcg
caatggcttaccgataacggtcgcccggccttgccttatcacgcaggtctgacacaggaa
acaagacagcttcatcaggacaggttcctgcgcgaggacggtctgatcatttgcgccacg
gtcgcctttggcatggggatcgacaagccgaatgtccgttttgtcgcccatctgaacctg
cccaagagcatggaagcctattatcaggaaaccggccgtgcgggccgcgatggtctgcca
gccaatgcatggatgaattacgatctatccgatatcgtttccattcgttccatgctggca
tcatccgatgcgcccgacagtcagaaacgcatcgaaagccgcaagctcgatgcgctggtt
ggccttgccgaaaccaccagatgccgccgacaggtgattttgtcctatttcggcgaagaa
gacacaaaaccctgcggcaattgcgatacctgccttgaaccggtcgatacctgggatgcg
accgaggcatcgcgtaaggcactttcggcggtctatcgtaccggacagcggttcggtcca
gcccacatcatcgaagttctgatgggacgcaaaaccgaaaaaatccgtcagaacagccat
gacgatctttcggtctatggtattggcaaggatgtttcccaaccgcaatggcggtcggtt
ttccgccagttgcttgccatgggatatcttcaggtcgatgtcgaggggcacggtggcgtt
tacctgaccgaagaatcccgccccgtcctgcgcggtgaaaaagtcgtcgaaatgcgcaag
gacccgggcgaaagcaaacgcaccatgaccaagcggctgcgtgatttcgataccgagttc
gagaacgaggaagatcgtgatctgtgggagcgcctgcgcaccctgcgccacgagcttgcc
accagccagaatgttccgccttatgtcattttcagtgacagaaccctttgggaaatggtc
cgcttcaaaccacggacattgcaggatatggcatcaatcaacggggttggcgtcaagaaa
ctcgaccagtacggtcttgttttccttgatgtcatggatggtcggcgctga

  All links  
Gene (27)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (34)   

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