ID A0A445FMQ8_GLYSO Unreviewed; 1447 AA.
AC A0A445FMQ8;
DT 08-MAY-2019, integrated into UniProtKB/TrEMBL.
DT 08-MAY-2019, sequence version 1.
DT 18-JUN-2025, entry version 28.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN ORFNames=D0Y65_047211 {ECO:0000313|EMBL:RZB50177.1};
OS Glycine soja (Wild soybean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3848 {ECO:0000313|EMBL:RZB50177.1, ECO:0000313|Proteomes:UP000289340};
RN [1] {ECO:0000313|EMBL:RZB50177.1, ECO:0000313|Proteomes:UP000289340}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. W05 {ECO:0000313|Proteomes:UP000289340};
RC TISSUE=Hypocotyl of etiolated seedlings {ECO:0000313|EMBL:RZB50177.1};
RA Xie M., Chung C.Y.L., Li M.-W., Wong F.-L., Chan T.-F., Lam H.-M.;
RT "A high-quality reference genome of wild soybean provides a powerful tool
RT to mine soybean genomes.";
RL Submitted (SEP-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + phosphate + H(+); Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC Evidence={ECO:0000256|ARBA:ARBA00047984};
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000256|ARBA:ARBA00004229}.
CC -!- SIMILARITY: Belongs to the DEAD box helicase family. DEAH subfamily.
CC {ECO:0000256|ARBA:ARBA00008792}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:RZB50177.1}.
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DR EMBL; QZWG01000018; RZB50175.1; -; Genomic_DNA.
DR EMBL; QZWG01000018; RZB50176.1; -; Genomic_DNA.
DR EMBL; QZWG01000018; RZB50177.1; -; Genomic_DNA.
DR Proteomes; UP000289340; Chromosome 18.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:TreeGrafter.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-KW.
DR CDD; cd20335; BRcat_RBR; 1.
DR CDD; cd17917; DEXHc_RHA-like; 1.
DR CDD; cd22585; Rcat_RBR_DEAH12-like; 1.
DR CDD; cd18791; SF2_C_RHA; 1.
DR FunFam; 1.20.120.1750:FF:000020; ATP-dependent RNA helicase DEAH12 chloroplastic; 1.
DR FunFam; 3.30.40.10:FF:000485; ATP-dependent RNA helicase DEAH12 chloroplastic; 1.
DR FunFam; 3.40.50.300:FF:001279; ATP-dependent RNA helicase DEAH12 chloroplastic; 1.
DR FunFam; 3.40.50.300:FF:002114; ATP-dependent RNA helicase DEAH12 chloroplastic; 1.
DR FunFam; 1.10.10.2130:FF:000001; Pre-mRNA-splicing factor ATP-dependent RNA helicase; 1.
DR FunFam; 1.20.120.1080:FF:000033; RBR-type E3 ubiquitin transferase; 1.
DR Gene3D; 1.20.120.1750; -; 1.
DR Gene3D; 1.10.10.2130; DEAH helicase family, winged-helix domain; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR042035; DEAH_win-hel_dom.
DR InterPro; IPR002464; DNA/RNA_helicase_DEAH_CS.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C-like.
DR InterPro; IPR002867; IBR_dom.
DR InterPro; IPR056245; KH_DEAH11/12.
DR InterPro; IPR056246; KH_DEAH11/12_1st.
DR InterPro; IPR056247; KH_DEAH11/12_2nd.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR056248; RBD_DEAH11/12.
DR InterPro; IPR056244; RRM_DEAH11/12.
DR InterPro; IPR044066; TRIAD_supradom.
DR InterPro; IPR013087; Znf_C2H2_type.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR PANTHER; PTHR18934:SF81; ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF01485; IBR; 1.
DR Pfam; PF24471; KH_DEAH11; 1.
DR Pfam; PF24638; KH_DEAH11_1st; 1.
DR Pfam; PF24641; KH_DEAH11_2nd; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR Pfam; PF24475; RBD_DEAH11; 1.
DR Pfam; PF24637; RRM_DEAH11; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00647; IBR; 2.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF57850; RING/U-box; 3.
DR PROSITE; PS00690; DEAH_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS51873; TRIAD; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Chloroplast {ECO:0000256|ARBA:ARBA00022528};
KW Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000313|EMBL:RZB50177.1};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Plastid {ECO:0000256|ARBA:ARBA00022640};
KW Reference proteome {ECO:0000313|Proteomes:UP000289340};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 1..159
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 189..355
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT DOMAIN 1235..1443
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS51873"
FT DOMAIN 1239..1281
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
SQ SEQUENCE 1447 AA; 162853 MW; 0102B857F51C6F2F CRC64;
MQIMVLIGET GSGKSTQLVQ FLADSGIGTD ESIVCTQPRK IAAKSVAQRV QEESIGCYEG
QSIKCCSTFS SSREFDSRIA FMTDHCLLQH YMSDNNLSGV SCIIIDEAHE RSLNTDLLLT
LLKSLLCRRV EMRLIIMSAT ADAKQLSDYF FACGIFRVLG RSFPVDIKYV PSDYAGDSGS
AVVASYVSDV VRMATEVHKT EKEGTILAFL TSQIEVEWAC EKFQAPSAVA LPLHGKLSSD
EQFRVFQNYT GKRKVIFSTN LAETSLTIPG VRYVIDSGLV KDSRFDPGSG MNVLKVCWIS
QSSADQRAGR AGRTEPGVCY RLYTEADYQS MDLNQEPEIR RVHLGVAVLR ILALGVKDVQ
GFDFVDAPSP SSIDMAIRNL IQLGAIELNN DVHDLTSEGW CLVRMGIEPR LGKLILGCFK
HGLGREGIIL AAVMANASSI FCRVGNEFDK QRSDCLKVQF CHCDGDLFTL LSVYKEWEAL
PRERKNKWCW ENSINAKSMR RCQDTILELE TCLEREHDVV TPSYWRWDPC MPSNHDKNLK
RVILFSLAEN VAMYSGCNQL GYEVAQTGQH VQLHPSCSLL VFAQKPSWVV FGELLSISNQ
YLVCVSAFDF QSLYDLCPAP LFDVSKMEER KLLMKTLSGL GCILLKRFCG KANCNLLALV
SRIRKACMDE RIFIEVNVDN NEIHLYASSN DMDIALGLVN DVLEYERKWL RTECMDKFLY
HGSGFSPPVA LFGSGAEIKH LELEKRSLSV DVCHPNINEI DDKELLMFFE KNTSGCICAV
HKFTGNTRDE DRDKWGRITF MSPDIVRRAA ELDGREFCGS SLKVVPSQLG GDKTFSFPAV
KARISWPRRL SRGFAIVKCD IKDVDYILRD FYNLAVGGRY VRCEVGKKSM DSVVINGLDK
ELSEAEISDV LRTATTRRIL DFFLVRGEAV GNPPCSALEE ALLKEIYPFL PKRNPHISPC
RVQVFAPEPK DAFMRALITF DGRLHLEAAK ALEQIEGKVL PGCLSWQKIK CQQLFHSSLT
FPTPVYRVIK EQLDEVLASF RNLKGLECNL DRTFNGSHRV KITANATRTV AEVRRPLEEL
LRGKTIEHDS LTPAVLQLML SRDGFSLKNS LQQETGTYIL FDRHNLNLRV FGSPNMVALA
QEKVIQSLLS LHEEKQLEIH LRGRDLPPDL MKQMIKNFGP DLHGLKERVP GVDLTLNIRR
HIIILHGSKE LKPRVEEIVF EIARSSHHLV ERFGNGPSCP ICLCEVEDGY RLEGCGHLFC
RMCLVEQFES AIKNQGTFPV CCTHRDCGDP ILLTDLRSLL FGDKLEDLFR ASLGAFVATS
GGTYRFCPSP DCPSIYRVAD PGSAGEPFVC RACYSETCTR CHLEYHPYLS CERYKEFKED
PDSSLIEWCR GKEQVKCCSA CGYVIEKVDG CNHVECKCGK HVCWVCLEFF STSNDCYDHL
RTIHLTI
//
