GS::Graph Splitting Method v2.5

Graph Splitting is a graph-based phylogenetic tree inference method. As input, it accepts not only nucleotide or amino acid sequences, but also distance matrices and similarity matrices.

Input data

Paste a FASTA file (protein or nucleotide; type is auto-detected), PHYLIP distance matrix (enable -d), or similarity matrix (enable -w). (sample)

EP replicates (-e)

Replicates for the EP method.

Bootstrap method (-b)

tbe or fbs.

Random seed (-r)

Optional; default is a random number.

Threads (-t)

Threads for the homology search (MMseqs2 / blastn).

MMseqs sensitivity (-m)

1.0 – 7.5. Protein input only (ignored for nucleotide / blastn).

Distance matrix input (-d)

Similarity matrix input (-w)

Newick with actual names (-l)