+F Repair protein KO #

  DNA Repair and Recombination Proteins - Acinetobacter baumannii BJAB0868

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BJAB0868_00713 Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BJAB0868_02731 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BJAB0868_01737 Uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BJAB0868_03123 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BJAB0868_03679 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BJAB0868_01140 putative EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BJAB0868_02523 Thiamine monophosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BJAB0868_03340 NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BJAB0868_02004 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BJAB0868_00896 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BJAB0868_00713 Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BJAB0868_00376 Methylated DNA-protein cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BJAB0868_02731 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BJAB0868_01737 Uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BJAB0868_03123 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BJAB0868_03679 A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BJAB0868_03682 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BJAB0868_03124 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BJAB0868_01140 putative EndoIII-related endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BJAB0868_03588 Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E BJAB0868_03564 Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BJAB0868_00817 NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BJAB0868_00669 DNA polymerase I - 3'-5' exonuclease and polymerase domains K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BJAB0868_03538 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A E BJAB0868_02751 Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B E BJAB0868_00373 Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C E BJAB0868_00500 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BJAB0868_00669 DNA polymerase I - 3'-5' exonuclease and polymerase domains K02335 polA; DNA polymerase I [EC:2.7.7.7] E BJAB0868_00817 NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BJAB0868_00350 DNA-directed RNA polymerase, beta subunit/140 kD subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BJAB0868_00351 DNA-directed RNA polymerase, beta' subunit/160 kD subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BJAB0868_03299 DNA-directed RNA polymerase, alpha subunit/40 kD subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BJAB0868_03420 DNA-directed RNA polymerase, subunit K/omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BJAB0868_01773 Transcription-repair coupling factor (superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BJAB0868_01358 Mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E BJAB0868_02353 DNA mismatch repair enzyme (predicted ATPase) K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BJAB0868_01321 Exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BJAB0868_01320 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E BJAB0868_00925 DNA polymerase III, epsilon subunit-related 3'-5' exonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] E BJAB0868_02549 DNA polymerase III, epsilon subunit-related 3'-5' exonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E BJAB0868_01619 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BJAB0868_00015 DNA polymerase sliding clamp subunit (PCNA-like protein) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BJAB0868_00298 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E BJAB0868_00596 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BJAB0868_01728 ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BJAB0868_01222 DNA polymerase III, epsilon subunit-related 3'-5' exonuclease K14159 rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7] E BJAB0868_02288 DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BJAB0868_00817 NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BJAB0868_00500 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BJAB0868_03530 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E BJAB0868_01012 Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E BJAB0868_p0077 Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BJAB0868_00416 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E BJAB0868_00415 Exonuclease V gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E BJAB0868_00417 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BJAB0868_02221 RecA/RadA recombinase K03553 recA; recombination protein RecA E BJAB0868_02799 Holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA E BJAB0868_02800 Holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BJAB0868_01675 Holliday junction resolvasome, endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BJAB0868_00952 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E BJAB0868_00428 Primosomal protein N' (replication factor Y) - superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BJAB0868_00909 ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 E BJAB0868_00910 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BJAB0868_02221 RecA/RadA recombinase K03553 recA; recombination protein RecA E BJAB0868_02850 putative ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms E BJAB0868_00014 Recombinational DNA repair ATPase (RecF pathway) K03629 recF; DNA replication and repair protein RecF E BJAB0868_03338 RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BJAB0868_03564 Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BJAB0868_02762 Recombinational DNA repair protein (RecF pathway) K03584 recO; DNA repair protein RecO (recombination protein O) E BJAB0868_01842 Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR E BJAB0868_00384 ATPase involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N) E BJAB0868_02799 Holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA E BJAB0868_02800 Holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BJAB0868_01675 Holliday junction resolvasome, endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E BJAB0868_00909 ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 E BJAB0868_00910 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 E BJAB0868_03328 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BJAB0868_02840 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BJAB0868_00013 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BJAB0868_00497 Topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BJAB0868_01785 Bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BJAB0868_03564 Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BJAB0868_02762 Recombinational DNA repair protein (RecF pathway) K03584 recO; DNA repair protein RecO (recombination protein O) F BJAB0868_01842 Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR F BJAB0868_00817 NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F BJAB0868_02428 Factor for inversion stimulation Fis, transcriptional activator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F BJAB0868_00658 Bacterial nucleoid DNA-binding protein K04764 ihfA; integration host factor subunit alpha F BJAB0868_01743 Bacterial nucleoid DNA-binding protein K05788 ihfB; integration host factor subunit beta E Supressor F BJAB0868_03538 Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A F BJAB0868_02751 Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B F BJAB0868_p0033 hypothetical protein K03746 hns; DNA-binding protein H-NS F BJAB0868_00336 hypothetical protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BJAB0868_00226 Nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D BJAB0868_p0047 Nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V D BJAB0868_02269 Nucleotidyltransferase/DNA polymerase involved in DNA repair K03502 umuC; DNA polymerase V D BJAB0868_01544 SOS-response transcriptional repressors (RecA-mediated autopeptidases) K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D BJAB0868_02221 RecA/RadA recombinase K03553 recA; recombination protein RecA D BJAB0868_00384 ATPase involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N) D BJAB0868_03530 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BJAB0868_02222 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BJAB0868_00895 Superfamily I DNA and RNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] C Modulation of nucleotide pools D BJAB0868_02523 Thiamine monophosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BJAB0868_03340 NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BJAB0868_02004 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BJAB0868_00896 dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BJAB0868_00762 Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BJAB0868_00760 Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024