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Transfer RNA Biogenesis - Malaciobacter mytili
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
C CCA adding factors
D AMYT_0491 cca; multifunctional tRNA nucleotidyl transferase / 2'3'-cyclic phosphodiesterase / 2'nucleotidase / phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D AMYT_0048 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AMYT_1465 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AMYT_0489 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D AMYT_0623 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D AMYT_0499 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AMYT_1458 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AMYT_0293 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AMYT_0857 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D AMYT_0993 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D AMYT_0313 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D AMYT_0216 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D AMYT_0436 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D AMYT_2437 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D AMYT_0669 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D AMYT_1737 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AMYT_0154 hisZ; ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AMYT_0359 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D AMYT_0358 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D AMYT_0844 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AMYT_0403 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
C AARS associated factors
D AMYT_0360 histidine triad nucleotide-binding protein, Hint/PKCI branch K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D AMYT_1260 trmI; tRNA m7G46 methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D AMYT_2582 truA; tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D AMYT_0324 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D AMYT_0950 truD; tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D AMYT_0277 tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D AMYT_0813 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AMYT_1126 NifS/IscS family cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D AMYT_0110 miaA; tRNA(i6A37) synthase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D AMYT_2078 mnmE; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, GTPase component K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D AMYT_2665 mnmG; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, MnmG component K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D AMYT_1105 selD; selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D AMYT_2082 rnpA; ribonuclease P, protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D AMYT_1691 rnpB; ribonuclease P, RNA component K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
C CCA adding factors
D AMYT_0491 cca; multifunctional tRNA nucleotidyl transferase / 2'3'-cyclic phosphodiesterase / 2'nucleotidase / phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D AMYT_0499 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AMYT_0489 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D AMYT_0844 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AMYT_0403 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D AMYT_0216 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D AMYT_0623 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D AMYT_0857 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D AMYT_0313 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D AMYT_0669 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D AMYT_1458 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AMYT_0436 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D AMYT_0993 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D AMYT_2241 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D AMYT_1440 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D AMYT_2437 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D AMYT_0048 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AMYT_1465 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AMYT_0293 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AMYT_0359 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D AMYT_0358 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D AMYT_1737 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AMYT_0154 hisZ; ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
C Trans-editing factors
D AMYT_1044 ybaK; cysteinyl-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
D AMYT_0563 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D AMYT_2434 miaB; isopentenyl-adenosine A37 tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D AMYT_2032 cmoA; carboxy-S-adenosyl-L-methionine synthase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D AMYT_1378 cmoB; tRNA (cmo5U34)-carboxymethyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D AMYT_2590 trmA; tRNA m5U54 methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D AMYT_1260 trmI; tRNA m7G46 methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D AMYT_0384 trmD; tRNA m1G37 methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D AMYT_2078 mnmE; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, GTPase component K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D AMYT_1583 rRNA methylase, SpoU family K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D AMYT_1866 yfiC; tRNA m6A37 methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
C Psudouridine synthases
D AMYT_2582 truA; tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D AMYT_0324 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D AMYT_0950 truD; tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D AMYT_0277 tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D AMYT_0589 mnmA; tRNA U34 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D AMYT_1508 ttcA; tRNA cytosine32 2-sulfurtransferase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D AMYT_0813 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AMYT_1126 NifS/IscS family cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Other tRNA modification factors
D AMYT_2665 mnmG; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, MnmG component K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D AMYT_0110 miaA; tRNA(i6A37) synthase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D AMYT_1700 FAD-dependent oxidoreductase, possible FAD-dependent cmnm(5)s(2)U34 oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D AMYT_1627 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D AMYT_0368 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D AMYT_0367 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D AMYT_0366 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D AMYT_0013 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D AMYT_2655 DUF208 domain-containing protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D AMYT_1105 selD; selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D AMYT_2463 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D AMYT_1614 thiI; tRNA uridine 4-sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D AMYT_2478 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D AMYT_0346 tsaB; N6-L-threonylcarbamoyladenine synthase, TsaB subunit K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D AMYT_0254 tsaD; N6-L-threonylcarbamoyladenine synthase, TsaD subunit K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D AMYT_1411 tsaE; N6-L-threonylcarbamoyladenine synthase, TsaE subunit K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D AMYT_0820 tcdA; tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
C AMYT_2443 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C AMYT_1488 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024