+D GENES KO
#
KEGG Orthology (KO) - Actinobacillus porcitonsillarum
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:apor00010]
D DDU33_10785 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DDU33_06100 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DDU33_05970 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DDU33_08440 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D DDU33_04515 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DDU33_01200 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DDU33_09500 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DDU33_04520 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D DDU33_07080 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DDU33_06425 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DDU33_05370 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DDU33_08830 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D DDU33_08825 aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DDU33_08820 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DDU33_06765 bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D DDU33_10070 galactose-1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D DDU33_01645 glucose-1-phosphatase K01085 agp; glucose-1-phosphatase [EC:3.1.3.10]
D DDU33_01785 D-hexose-6-phosphate mutarotase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D DDU33_08920 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D DDU33_00835 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:apor00020]
D DDU33_03960 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DDU33_07275 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D DDU33_07270 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DDU33_08820 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DDU33_09915 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DDU33_09910 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DDU33_02595 fumarate reductase (quinol) flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DDU33_02600 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DDU33_02605 fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C
D DDU33_02610 fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D DDU33_02220 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D DDU33_05030 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DDU33_00650 mqo; malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D DDU33_08920 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D DDU33_08830 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D DDU33_08825 aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:apor00030]
D DDU33_10785 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DDU33_00625 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D DDU33_00620 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D DDU33_00590 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D DDU33_01840 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D DDU33_06650 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DDU33_05290 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D DDU33_04380 ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D DDU33_05935 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D DDU33_03245 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D DDU33_08845 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D DDU33_03150 idnK; gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D DDU33_04515 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DDU33_05970 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DDU33_08440 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D DDU33_06100 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:apor00040]
D DDU33_09145 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DDU33_01580 3-dehydro-L-gulonate 2-dehydrogenase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D DDU33_01550 carbohydrate kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D DDU33_02360 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase UlaD K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D DDU33_02335 L-ribulose-5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D DDU33_02330 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D DDU33_01840 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D DDU33_01755 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D DDU33_01760 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D DDU33_03445 fucI; L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3]
D DDU33_03440 L-fuculokinase K00879 fucK; L-fuculokinase [EC:2.7.1.51]
D DDU33_03430 L-fuculose-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:apor00051]
D DDU33_04475 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D DDU33_00935 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D DDU33_02080 alpha-D-phosphohexomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D DDU33_09150 phosphomannomutase CpsG K01840 manB; phosphomannomutase [EC:5.4.2.8]
D DDU33_03445 fucI; L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3]
D DDU33_03440 L-fuculokinase K00879 fucK; L-fuculokinase [EC:2.7.1.51]
D DDU33_03430 L-fuculose-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D DDU33_03045 2-dehydro-3-deoxyglucarate aldolase K12660 rhmA; 2-dehydro-3-deoxy-L-rhamnonate aldolase [EC:4.1.2.53]
D DDU33_06100 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DDU33_05970 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DDU33_08440 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D DDU33_06785 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D DDU33_01760 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D DDU33_04515 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DDU33_01200 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DDU33_06790 PTS fructose transporter subunit EIIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D DDU33_01110 PTS mannose transporter subunit IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D DDU33_04530 PTS mannose transporter subunit IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D DDU33_04535 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D DDU33_01115 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D DDU33_04540 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D DDU33_01120 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D DDU33_08290 hexitol phosphatase HxpB K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
C 00052 Galactose metabolism [PATH:apor00052]
D DDU33_10070 galactose-1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D DDU33_10075 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D DDU33_10080 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D DDU33_00215 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DDU33_09145 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DDU33_10065 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D DDU33_10085 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D DDU33_06100 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DDU33_04480 fructosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
C 00053 Ascorbate and aldarate metabolism [PATH:apor00053]
D DDU33_02355 PTS ascorbate-specific transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D DDU33_02350 PTS ascorbate transporter subunit IIC K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D DDU33_02345 L-ascorbate 6-phosphate lactonase K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-]
D DDU33_02360 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase UlaD K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D DDU33_02335 L-ribulose-5-phosphate 3-epimerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D DDU33_02330 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D DDU33_01580 3-dehydro-L-gulonate 2-dehydrogenase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D DDU33_01550 carbohydrate kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
C 00500 Starch and sucrose metabolism [PATH:apor00500]
D DDU33_00860 PTS maltose transporter subunit IIBC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D DDU33_04480 fructosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D DDU33_09145 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DDU33_08325 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D DDU33_08330 glycogen synthase GlgA K00703 glgA; starch synthase [EC:2.4.1.21]
D DDU33_08315 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D DDU33_08335 glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D DDU33_04230 maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D DDU33_08320 glgX; glycogen debranching enzyme GlgX K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D DDU33_04220 alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1]
D DDU33_04180 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D DDU33_00835 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D DDU33_09935 PTS trehalose transporter subunit IIBC K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D DDU33_09930 treC; alpha,alpha-phosphotrehalase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D DDU33_10785 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DDU33_04475 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:apor00520]
D DDU33_06415 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D DDU33_00835 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D DDU33_06805 N-acetylglucosamine kinase K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D DDU33_07390 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D DDU33_07385 glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D DDU33_04475 aminoimidazole riboside kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D DDU33_03620 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DDU33_04375 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D DDU33_07555 glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D DDU33_03770 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D DDU33_03735 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D DDU33_00440 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D DDU33_01230 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D DDU33_07375 N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D DDU33_07370 N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D DDU33_07380 nanA; N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D DDU33_09145 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DDU33_10075 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D DDU33_10080 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D DDU33_00215 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DDU33_01110 PTS mannose transporter subunit IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D DDU33_04530 PTS mannose transporter subunit IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D DDU33_04535 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D DDU33_01115 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D DDU33_04540 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D DDU33_01120 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D DDU33_10785 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DDU33_00935 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D DDU33_02080 alpha-D-phosphohexomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D DDU33_09150 phosphomannomutase CpsG K01840 manB; phosphomannomutase [EC:5.4.2.8]
D DDU33_08325 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:apor00620]
D DDU33_08830 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D DDU33_08825 aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DDU33_08820 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DDU33_05790 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D DDU33_06765 bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D DDU33_08350 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DDU33_08345 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DDU33_05370 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DDU33_03635 acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DDU33_01855 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DDU33_01850 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DDU33_08415 acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DDU33_04860 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D DDU33_03740 D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D DDU33_08340 D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D DDU33_03350 aldehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D DDU33_05650 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D DDU33_06810 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D DDU33_05090 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D DDU33_04610 oadA; oxaloacetate decarboxylase subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D DDU33_04605 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D DDU33_04615 oxaloacetate decarboxylase gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D DDU33_05030 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DDU33_00650 mqo; malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D DDU33_02220 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D DDU33_02595 fumarate reductase (quinol) flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DDU33_02600 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DDU33_02605 fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C
D DDU33_02610 fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D DDU33_06700 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D DDU33_08920 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D DDU33_07255 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:apor00630]
D DDU33_05030 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DDU33_03960 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DDU33_06505 catalase K03781 katE; catalase [EC:1.11.1.6]
D DDU33_00185 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D DDU33_03675 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D DDU33_03990 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DDU33_06135 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DDU33_08820 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DDU33_02195 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D DDU33_03350 aldehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D DDU33_03475 lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
D DDU33_09865 sulfate ABC transporter substrate-binding protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D DDU33_09870 fdnG; formate dehydrogenase-N subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D DDU33_09875 fdxH; formate dehydrogenase subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D DDU33_09880 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
D DDU33_09625 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:apor00640]
D DDU33_08350 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DDU33_08345 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DDU33_08820 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DDU33_05790 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D DDU33_09840 fatty-acid oxidation protein subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DDU33_03635 acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DDU33_01855 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DDU33_01850 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DDU33_08415 acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DDU33_09910 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DDU33_09915 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DDU33_03960 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DDU33_01130 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D DDU33_03475 lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
C 00650 Butanoate metabolism [PATH:apor00650]
D DDU33_09840 fatty-acid oxidation protein subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DDU33_06765 bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D DDU33_04605 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D DDU33_02595 fumarate reductase (quinol) flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DDU33_02600 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DDU33_02605 fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C
D DDU33_02610 fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D DDU33_05790 pflB; formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D DDU33_04910 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DDU33_09040 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DDU33_09045 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DDU33_04915 acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:apor00660]
D DDU33_04910 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DDU33_09040 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DDU33_09045 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DDU33_04915 acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D DDU33_09910 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DDU33_09915 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DDU33_00110 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D DDU33_00105 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D DDU33_09825 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:apor00562]
D DDU33_08910 inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D DDU33_07000 NAD(P)-dependent oxidoreductase K22230 iolU; scyllo-inositol 2-dehydrogenase (NADP+) [EC:1.1.1.-]
D DDU33_01200 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:apor00190]
D DDU33_00250 FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D DDU33_02595 fumarate reductase (quinol) flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DDU33_02600 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DDU33_02605 fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C
D DDU33_02610 fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D DDU33_06020 cytochrome bd-I ubiquinol oxidase subunit CydA K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D DDU33_06025 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D DDU33_03200 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D DDU33_03210 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D DDU33_03205 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D DDU33_03195 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D DDU33_03215 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D DDU33_03180 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D DDU33_03190 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D DDU33_03185 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D DDU33_01540 inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:apor00710]
D DDU33_04520 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D DDU33_09500 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DDU33_04515 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DDU33_05970 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DDU33_08440 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D DDU33_06650 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D DDU33_04380 ribose-5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D DDU33_01200 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DDU33_01840 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D DDU33_05290 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D DDU33_06700 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D DDU33_08920 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D DDU33_05030 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:apor00720]
D DDU33_06700 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D DDU33_05030 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DDU33_02220 fumC; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D DDU33_02595 fumarate reductase (quinol) flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DDU33_02600 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DDU33_02605 fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C
D DDU33_02610 fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D DDU33_09915 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D DDU33_09910 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D DDU33_03960 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D DDU33_03635 acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DDU33_01855 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DDU33_01850 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DDU33_08415 acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DDU33_09650 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D DDU33_09220 metF; methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D DDU33_08345 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DDU33_08350 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:apor00680]
D DDU33_09865 sulfate ABC transporter substrate-binding protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D DDU33_09870 fdnG; formate dehydrogenase-N subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D DDU33_09875 fdxH; formate dehydrogenase subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D DDU33_09880 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
D DDU33_06135 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DDU33_00185 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D DDU33_06425 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DDU33_06700 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D DDU33_05030 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DDU33_04515 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D DDU33_05970 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DDU33_08440 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D DDU33_06100 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DDU33_03750 torA; trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D DDU33_03755 torC; pentaheme c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D DDU33_03745 molecular chaperone TorD K03533 torD; TorA specific chaperone
D DDU33_08350 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D DDU33_08345 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DDU33_07080 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DDU33_04385 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DDU33_07730 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DDU33_05010 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:apor00910]
D DDU33_01010 periplasmic nitrate reductase subunit alpha K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D DDU33_00995 nitrate reductase K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D DDU33_04905 nrfA; ammonia-forming cytochrome c nitrite reductase subunit c552 K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D DDU33_04470 nirK; nitrite reductase, copper-containing K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D DDU33_03980 hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D DDU33_07070 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D DDU33_03990 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DDU33_04565 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D DDU33_09035 carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:apor00920]
D DDU33_03915 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DDU33_03920 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D DDU33_03925 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D DDU33_03930 sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D DDU33_03805 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D DDU33_03800 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DDU33_00630 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D DDU33_03795 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D DDU33_03730 assimilatory sulfite reductase (NADPH) flavoprotein subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D DDU33_03725 sulfite reductase subunit beta K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D DDU33_00080 thiosulfate sulfurtransferase GlpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D DDU33_01735 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DDU33_02315 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DDU33_10440 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DDU33_02320 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DDU33_09635 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D DDU33_08235 methionine biosynthesis PLP-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:apor00061]
D DDU33_03635 acetyl-CoA carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D DDU33_01855 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D DDU33_01850 accC; acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D DDU33_08415 acetyl-CoA carboxylase, carboxyltransferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D DDU33_01845 acyl carrier protein K02078 acpP; acyl carrier protein
D DDU33_04290 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D DDU33_04420 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DDU33_10700 beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D DDU33_04295 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DDU33_04095 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D DDU33_06290 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D DDU33_07560 enoyl-[acyl-carrier-protein] reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DDU33_02290 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DDU33_07115 long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:apor00071]
D DDU33_09835 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D DDU33_09840 fatty-acid oxidation protein subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DDU33_02290 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DDU33_07115 long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DDU33_06765 bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:apor00561]
D DDU33_02195 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D DDU33_08955 dihydroxyacetone kinase subunit DhaK K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D DDU33_08950 dihydroxyacetone kinase subunit L K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D DDU33_08945 PTS mannose transporter subunit IID K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D DDU33_03310 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D DDU33_06395 glycerol-3-phosphate 1-O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D DDU33_04425 phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D DDU33_10660 glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D DDU33_03645 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D DDU33_07220 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D DDU33_10085 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:apor00564]
D DDU33_01730 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D DDU33_03335 anaerobic glycerol-3-phosphate dehydrogenase subunit A K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D DDU33_03340 anaerobic glycerol-3-phosphate dehydrogenase subunit B K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D DDU33_03345 glpC; anaerobic glycerol-3-phosphate dehydrogenase subunit C K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D DDU33_06395 glycerol-3-phosphate 1-O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D DDU33_10660 glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D DDU33_03645 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D DDU33_02505 tagD; glycerol-3-phosphate cytidylyltransferase K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]
D DDU33_07220 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D DDU33_03320 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D DDU33_06265 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D DDU33_05225 CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D DDU33_03875 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D DDU33_06905 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D DDU33_06185 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D DDU33_06800 phosphatidylglycerophosphatase K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:apor00600]
D DDU33_10065 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D DDU33_10085 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:apor00592]
D DDU33_09835 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids
D DDU33_10310 acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:apor00230]
D DDU33_01430 ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D DDU33_00635 ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D DDU33_08845 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D DDU33_10115 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D DDU33_00555 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D DDU33_06140 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D DDU33_06330 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D DDU33_03300 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D DDU33_05495 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D DDU33_08205 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D DDU33_08215 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D DDU33_00355 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D DDU33_09925 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D DDU33_10270 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D DDU33_06890 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D DDU33_07215 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D DDU33_01050 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D DDU33_05945 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D DDU33_07050 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D DDU33_08640 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D DDU33_08780 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D DDU33_06775 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D DDU33_09820 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D DDU33_06725 xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D DDU33_08795 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D DDU33_06730 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D DDU33_04875 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DDU33_04870 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D DDU33_10520 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D DDU33_02180 dGTPase K01129 dgt; dGTPase [EC:3.1.5.1]
D DDU33_03295 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D DDU33_01800 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D DDU33_07715 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D DDU33_07075 GTP diphosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D DDU33_10705 class I adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D DDU33_10355 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D DDU33_10055 LOG family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D DDU33_01960 bifunctional metallophosphatase/5'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D DDU33_09375 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D DDU33_04740 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D DDU33_08420 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D DDU33_01425 3',5'-cyclic-AMP phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D DDU33_07395 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D DDU33_03805 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D DDU33_03800 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DDU33_02685 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D DDU33_02690 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D DDU33_02695 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D DDU33_04565 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:apor00240]
D DDU33_08840 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D DDU33_06850 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D DDU33_07600 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D DDU33_08710 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D DDU33_06775 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D DDU33_08420 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D DDU33_05705 septum formation inhibitor Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D DDU33_04885 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D DDU33_07575 (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D DDU33_08895 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D DDU33_07215 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D DDU33_01050 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D DDU33_04730 dUMP phosphatase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D DDU33_10045 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D DDU33_07110 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D DDU33_01960 bifunctional metallophosphatase/5'-nucleotidase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D DDU33_09375 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D DDU33_10055 LOG family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D DDU33_07540 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D DDU33_10520 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D DDU33_08900 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D DDU33_04875 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DDU33_04870 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D DDU33_02005 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D DDU33_01250 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D DDU33_08450 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D DDU33_10690 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D DDU33_09805 NADP-dependent 3-hydroxy acid dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:apor00250]
D DDU33_08385 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DDU33_08210 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D DDU33_03280 L-asparaginase 2 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D DDU33_01990 aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D DDU33_05835 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D DDU33_05485 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D DDU33_10130 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D DDU33_05095 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D DDU33_10355 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D DDU33_09925 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D DDU33_07070 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D DDU33_04130 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D DDU33_03990 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DDU33_03620 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DDU33_10115 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:apor00260]
D DDU33_07610 lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DDU33_10430 bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D DDU33_04830 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DDU33_10435 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D DDU33_01145 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D DDU33_06135 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DDU33_00185 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D DDU33_02195 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D DDU33_07080 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DDU33_04385 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DDU33_07730 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DDU33_05010 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D DDU33_09805 NADP-dependent 3-hydroxy acid dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D DDU33_08820 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DDU33_05225 CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D DDU33_09850 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D DDU33_04370 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D DDU33_00605 aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D DDU33_09795 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D DDU33_09800 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D DDU33_04315 diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D DDU33_04310 aspartate aminotransferase family protein K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]
C 00270 Cysteine and methionine metabolism [PATH:apor00270]
D DDU33_01735 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DDU33_02315 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DDU33_10440 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DDU33_02320 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D DDU33_06510 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D DDU33_09595 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D DDU33_06390 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DDU33_05405 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D DDU33_07145 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D DDU33_01920 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D DDU33_07050 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D DDU33_06385 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DDU33_10585 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D DDU33_07610 lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DDU33_10430 bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D DDU33_04830 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DDU33_09635 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D DDU33_08235 methionine biosynthesis PLP-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D DDU33_00535 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DDU33_08385 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DDU33_00605 aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D DDU33_05030 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D DDU33_09850 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D DDU33_04385 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DDU33_07730 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:apor00280]
D DDU33_00535 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DDU33_08820 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DDU33_09840 fatty-acid oxidation protein subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DDU33_09835 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D DDU33_01690 hydroxyacid dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:apor00290]
D DDU33_04370 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D DDU33_00110 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D DDU33_00105 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D DDU33_09825 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D DDU33_04910 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DDU33_09040 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DDU33_09045 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DDU33_04915 acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D DDU33_01675 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D DDU33_10780 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D DDU33_00535 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DDU33_05835 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D DDU33_07255 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:apor00300]
D DDU33_07610 lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DDU33_10430 bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D DDU33_04830 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DDU33_08915 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DDU33_08230 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D DDU33_01465 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D DDU33_05960 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D DDU33_00965 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D DDU33_02535 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D DDU33_02215 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D DDU33_01295 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D DDU33_01285 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:apor00310]
D DDU33_07270 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DDU33_08820 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DDU33_09840 fatty-acid oxidation protein subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DDU33_00605 aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
C 00220 Arginine biosynthesis [PATH:apor00220]
D DDU33_04570 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D DDU33_10130 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D DDU33_05095 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D DDU33_02685 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D DDU33_02690 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D DDU33_02695 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D DDU33_03990 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DDU33_04565 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D DDU33_07070 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D DDU33_08385 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DDU33_05835 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D DDU33_08520 amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D DDU33_05955 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D DDU33_05950 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D DDU33_05960 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D DDU33_06085 acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:apor00330]
D DDU33_04720 FAD-dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D DDU33_04965 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D DDU33_04130 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D DDU33_09275 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D DDU33_01215 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D DDU33_08385 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:apor00340]
D DDU33_00350 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D DDU33_00280 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D DDU33_00295 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D DDU33_00310 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D DDU33_00290 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D DDU33_00325 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D DDU33_07735 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DDU33_00335 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DDU33_00340 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:apor00350]
D DDU33_08385 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DDU33_07735 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DDU33_00335 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DDU33_06765 bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00360 Phenylalanine metabolism [PATH:apor00360]
D DDU33_08385 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DDU33_07735 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DDU33_00335 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:apor00380]
D DDU33_07270 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D DDU33_08820 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DDU33_09840 fatty-acid oxidation protein subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DDU33_06505 catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:apor00400]
D DDU33_08460 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DDU33_00490 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DDU33_06235 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D DDU33_01455 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D DDU33_10810 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D DDU33_06230 shikimate kinase AroK K00891 aroK; shikimate kinase [EC:2.7.1.71]
D DDU33_08525 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D DDU33_08720 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D DDU33_05585 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D DDU33_05590 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D DDU33_05595 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D DDU33_09085 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D DDU33_09795 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D DDU33_09800 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D DDU33_00495 bifunctional chorismate mutase/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D DDU33_05770 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D DDU33_08385 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DDU33_07735 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DDU33_00335 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
D DDU33_09840 fatty-acid oxidation protein subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism [PATH:apor00430]
D DDU33_08345 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D DDU33_08350 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:apor00450]
D DDU33_08235 methionine biosynthesis PLP-dependent protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D DDU33_06510 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D DDU33_09595 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D DDU33_06390 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DDU33_05405 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D DDU33_00070 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D DDU33_03805 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D DDU33_03800 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DDU33_06660 selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D DDU33_01955 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D DDU33_06770 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:apor00460]
D DDU33_08210 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D DDU33_03280 L-asparaginase 2 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D DDU33_01990 aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D DDU33_06135 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:apor00470]
D DDU33_10395 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D DDU33_04340 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DDU33_00605 aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D DDU33_01985 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D DDU33_01275 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D DDU33_02535 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D DDU33_02215 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:apor00480]
D DDU33_06115 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D DDU33_09900 aminopeptidase PepB K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D DDU33_05980 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D DDU33_06720 cytosol nonspecific dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D DDU33_02455 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DDU33_03065 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DDU33_05575 glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D DDU33_00590 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D DDU33_00625 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D DDU33_05265 glutathione peroxidase K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:apor00511]
D DDU33_10065 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
C 00540 Lipopolysaccharide biosynthesis [PATH:apor00540]
D DDU33_06295 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D DDU33_04360 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D DDU33_06285 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D DDU33_01750 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D DDU33_04985 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D DDU33_00120 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D DDU33_02190 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D DDU33_04825 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D DDU33_05190 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D DDU33_00065 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D DDU33_00040 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D DDU33_08975 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D DDU33_10575 msbB; lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D DDU33_04575 phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D DDU33_08995 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D DDU33_09580 D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D DDU33_09485 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D DDU33_07205 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D DDU33_03375 ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D DDU33_03830 lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D DDU33_03895 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D DDU33_00045 RfaL protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis [PATH:apor00542]
D DDU33_03705 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:apor00541]
D DDU33_09145 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D DDU33_00215 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D DDU33_01385 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D DDU33_01390 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D DDU33_01375 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D DDU33_01380 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D DDU33_00935 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D DDU33_02080 alpha-D-phosphohexomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D DDU33_09150 phosphomannomutase CpsG K01840 manB; phosphomannomutase [EC:5.4.2.8]
D DDU33_07555 glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:apor00550]
D DDU33_00440 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D DDU33_01230 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D DDU33_04335 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D DDU33_01275 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D DDU33_01295 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D DDU33_04340 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DDU33_01285 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D DDU33_06260 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D DDU33_01280 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D DDU33_04330 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D DDU33_09760 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D DDU33_06225 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DDU33_01790 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D DDU33_02435 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D DDU33_01300 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D DDU33_02420 serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DDU33_09470 serine-type D-Ala-D-Ala carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:apor00552]
D DDU33_03705 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D DDU33_02495 hypothetical protein K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:apor00543]
D DDU33_03705 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D DDU33_01735 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D DDU33_02315 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:apor00730]
D DDU33_09425 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DDU33_10350 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D DDU33_08905 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D DDU33_06190 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D DDU33_00515 small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D DDU33_04740 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:apor00740]
D DDU33_07030 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D DDU33_07020 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D DDU33_07035 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D DDU33_07025 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D DDU33_05215 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D DDU33_01430 ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:apor00750]
D DDU33_01070 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D DDU33_03720 pyridoxal kinase PdxY K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D DDU33_07730 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D DDU33_01145 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:apor00760]
D DDU33_05945 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D DDU33_05210 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D DDU33_07215 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D DDU33_01050 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D DDU33_08420 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D DDU33_10640 NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D DDU33_06130 NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D DDU33_09135 pntA; Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D DDU33_09130 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:apor00770]
D DDU33_04910 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DDU33_09040 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D DDU33_09045 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D DDU33_04915 acetolactate synthase 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D DDU33_01675 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D DDU33_10780 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D DDU33_01885 type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D DDU33_01260 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D DDU33_08420 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D DDU33_00035 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D DDU33_09240 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D DDU33_01435 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D DDU33_00535 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:apor00780]
D DDU33_01610 bioC; malonyl-[acyl-carrier protein] O-methyltransferase BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D DDU33_10700 beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D DDU33_04295 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DDU33_06290 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D DDU33_07560 enoyl-[acyl-carrier-protein] reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DDU33_01615 DUF452 domain-containing protein K09789 bioG; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D DDU33_01620 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D DDU33_01625 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D DDU33_08490 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D DDU33_01605 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D DDU33_01460 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D DDU33_01225 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:apor00785]
D DDU33_02410 lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D DDU33_02405 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D DDU33_08820 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DDU33_08830 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D DDU33_08825 aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D DDU33_07275 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D DDU33_07270 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
C 00790 Folate biosynthesis [PATH:apor00790]
D DDU33_08990 GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D DDU33_04840 dihydroneopterin triphosphate diphosphatase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D DDU33_10665 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D DDU33_05670 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D DDU33_00975 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D DDU33_09270 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D DDU33_08410 bifunctional tetrahydrofolate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D DDU33_07030 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D DDU33_04955 anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D DDU33_04750 aminodeoxychorismate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D DDU33_04745 branched-chain amino acid aminotransferase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D DDU33_05505 queD; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D DDU33_05510 radical SAM protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D DDU33_05500 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D DDU33_07210 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D DDU33_07980 GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D DDU33_07975 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D DDU33_07965 molybdopterin synthase catalytic subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D DDU33_01910 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D DDU33_10110 molybdopterin molybdotransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D DDU33_00900 bifunctional molybdenum cofactor guanylyltransferase MobA/molybdopterin-guanine dinucleotide biosynthesis adaptor protein MobB K13818 mobAB; molybdopterin-guanine dinucleotide biosynthesis protein [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:apor00670]
D DDU33_09270 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D DDU33_09650 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D DDU33_06135 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D DDU33_06140 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D DDU33_10270 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D DDU33_02645 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D DDU33_06390 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D DDU33_10690 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D DDU33_09625 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D DDU33_09220 metF; methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D DDU33_10470 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:apor00860]
D DDU33_04760 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DDU33_09475 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D DDU33_03710 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D DDU33_01515 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D DDU33_06815 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D DDU33_06820 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D DDU33_10490 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D DDU33_09685 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D DDU33_02625 menaquinone-dependent protoporphyrinogen IX dehydrogenase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D DDU33_04235 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D DDU33_06825 HemX protein K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D DDU33_03910 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D DDU33_01175 hutZ; heme utilization protein HutZ K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D DDU33_03040 Bfr protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:apor00130]
D DDU33_05830 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D DDU33_00890 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D DDU33_00885 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D DDU33_06915 o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D DDU33_08735 o-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D DDU33_01795 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D DDU33_04065 hotdog fold thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D DDU33_01415 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D DDU33_01025 NAD(P)H oxidoreductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D DDU33_06560 hydroxylase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:apor00900]
D DDU33_08905 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D DDU33_06950 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D DDU33_08930 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D DDU33_08850 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D DDU33_08935 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D DDU33_05445 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D DDU33_03820 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D DDU33_08970 (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D DDU33_04280 octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D DDU33_06260 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:apor00907]
D DDU33_09840 fatty-acid oxidation protein subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DDU33_09835 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D DDU33_06650 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:apor00523]
D DDU33_01385 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D DDU33_01390 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D DDU33_01375 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D DDU33_01380 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D DDU33_05830 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D DDU33_01390 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:apor00332]
D DDU33_09275 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D DDU33_01215 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:apor00261]
D DDU33_03805 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D DDU33_03800 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D DDU33_07610 lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D DDU33_10430 bifunctional aspartate kinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D DDU33_04830 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D DDU33_08915 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D DDU33_08230 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:apor00521]
D DDU33_08910 inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D DDU33_01385 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D DDU33_01390 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D DDU33_01375 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D DDU33_01380 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:apor00525]
D DDU33_01385 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D DDU33_01390 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:apor00401]
D DDU33_00495 bifunctional chorismate mutase/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D DDU33_08385 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DDU33_07735 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DDU33_00335 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis [PATH:apor00405]
D DDU33_02780 PhzF family phenazine biosynthesis protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
D DDU33_05585 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D DDU33_05590 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D DDU33_04290 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D DDU33_04295 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DDU33_07560 enoyl-[acyl-carrier-protein] reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D DDU33_01845 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:apor00999]
D DDU33_07145 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D DDU33_10810 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:apor00362]
D DDU33_09835 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D DDU33_09385 fdx; ISC system 2Fe-2S type ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D DDU33_09840 fatty-acid oxidation protein subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D DDU33_04605 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
C 00627 Aminobenzoate degradation
D DDU33_04860 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:apor00625]
D DDU33_06765 bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
D DDU33_09835 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation
D DDU33_02685 ureC; urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D DDU33_02690 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D DDU33_02695 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:apor00930]
D DDU33_09840 fatty-acid oxidation protein subunit alpha K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:apor00626]
D DDU33_06765 bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:apor03020]
D DDU33_03495 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D DDU33_03500 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D DDU33_02090 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D DDU33_01805 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:apor03010]
D DDU33_07580 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D DDU33_08760 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D DDU33_03565 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D DDU33_02095 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D DDU33_02130 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D DDU33_00560 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D DDU33_03840 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D DDU33_02145 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D DDU33_07455 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D DDU33_03530 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D DDU33_02100 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D DDU33_03835 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D DDU33_02105 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D DDU33_02150 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D DDU33_09715 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D DDU33_02045 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D DDU33_03580 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D DDU33_00570 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D DDU33_03555 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D DDU33_02170 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D DDU33_01325 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D DDU33_03415 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D DDU33_03550 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D DDU33_03535 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D DDU33_03540 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D DDU33_02155 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D DDU33_02140 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D DDU33_03425 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D DDU33_00575 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D DDU33_03420 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D DDU33_03410 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D DDU33_07450 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D DDU33_02165 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D DDU33_02120 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D DDU33_03570 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D DDU33_02085 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D DDU33_02135 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D DDU33_02030 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D DDU33_06960 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D DDU33_04275 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D DDU33_03560 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D DDU33_03545 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D DDU33_02160 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D DDU33_09175 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D DDU33_04270 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D DDU33_04325 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D DDU33_03575 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D DDU33_02125 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D DDU33_01835 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D DDU33_06645 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D DDU33_04430 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D DDU33_04320 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D DDU33_04240 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D DDU33_06965 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D DDU33_01830 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D DDU33_02110 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D DDU33_04635 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_10385 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_05295 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_01980 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_04010 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_03250 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_04020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_03265 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_10375 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_01970 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_04650 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_05310 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_01965 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_03270 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_04025 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_04030 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_04655 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_05315 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_10370 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:apor00970]
D DDU33_03260 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DDU33_04755 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DDU33_04645 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DDU33_05305 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DDU33_03995 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DDU33_04710 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DDU33_04715 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DDU33_09660 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DDU33_02235 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DDU33_10100 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DDU33_00150 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DDU33_00145 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DDU33_04035 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DDU33_08180 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D DDU33_10790 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DDU33_10795 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DDU33_01975 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DDU33_04015 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DDU33_10380 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DDU33_03685 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DDU33_06000 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DDU33_06010 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DDU33_08175 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DDU33_01870 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DDU33_04000 tRNA-His K14226 tRNA-His; tRNA His
D DDU33_03255 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DDU33_04640 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DDU33_05300 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DDU33_03680 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DDU33_06005 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DDU33_10800 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DDU33_08670 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DDU33_09955 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DDU33_02015 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DDU33_02020 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DDU33_02025 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DDU33_08265 tRNA-Met K14230 tRNA-Met; tRNA Met
D DDU33_07045 tRNA-Met K14230 tRNA-Met; tRNA Met
D DDU33_09965 tRNA-Met K14230 tRNA-Met; tRNA Met
D DDU33_10805 tRNA-Met K14230 tRNA-Met; tRNA Met
D DDU33_02240 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D DDU33_04005 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DDU33_09655 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DDU33_04705 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DDU33_10820 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DDU33_01490 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DDU33_03355 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DDU33_01880 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DDU33_01865 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DDU33_03630 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DDU33_04040 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D DDU33_01875 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D DDU33_07250 tRNA-Val K14237 tRNA-Val; tRNA Val
D DDU33_04765 tRNA-Val K14237 tRNA-Val; tRNA Val
D DDU33_04770 tRNA-Val K14237 tRNA-Val; tRNA Val
D DDU33_04775 tRNA-Val K14237 tRNA-Val; tRNA Val
D DDU33_04780 tRNA-Val K14237 tRNA-Val; tRNA Val
D DDU33_01950 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D DDU33_04760 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DDU33_08260 glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D DDU33_09160 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DDU33_05700 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DDU33_08630 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D DDU33_01660 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DDU33_01630 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DDU33_06255 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DDU33_09125 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DDU33_01955 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D DDU33_09345 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DDU33_06770 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DDU33_02645 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D DDU33_00255 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DDU33_09665 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DDU33_05220 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DDU33_09995 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D DDU33_05120 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DDU33_03600 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DDU33_05440 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DDU33_08555 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DDU33_08550 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DDU33_01420 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DDU33_00895 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:apor03060]
D DDU33_02115 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D DDU33_03400 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D DDU33_08675 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D DDU33_06475 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D DDU33_06480 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D DDU33_06470 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D DDU33_04060 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DDU33_10745 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DDU33_01725 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D DDU33_02230 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D DDU33_08940 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D DDU33_10685 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D DDU33_01500 Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D DDU33_01505 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D DDU33_01510 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D DDU33_07475 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D DDU33_03815 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:apor04122]
D DDU33_09425 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DDU33_10620 sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D DDU33_02580 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D DDU33_02575 tusC; sulfurtransferase complex subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D DDU33_02570 sulfurtransferase complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D DDU33_06895 sulfurtransferase TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D DDU33_05560 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D DDU33_07965 molybdopterin synthase catalytic subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D DDU33_07980 GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D DDU33_07970 molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein
D DDU33_10105 moeB; molybdopterin-synthase adenylyltransferase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D DDU33_07975 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D DDU33_01910 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D DDU33_10350 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:apor03018]
D DDU33_03655 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D DDU33_05235 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D DDU33_08505 ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D DDU33_06425 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DDU33_07415 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D DDU33_01315 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D DDU33_07405 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D DDU33_06435 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D DDU33_10445 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D DDU33_06100 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DDU33_04150 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D DDU33_05355 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DDU33_01095 RNA chaperone Hfq K03666 hfq; host factor-I protein
D DDU33_05675 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:apor03030]
D DDU33_00155 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DDU33_06310 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DDU33_06885 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DDU33_02000 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DDU33_09675 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DDU33_05245 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DDU33_01700 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DDU33_04795 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DDU33_08575 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D DDU33_01320 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D DDU33_09545 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DDU33_10125 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D DDU33_00510 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D DDU33_09775 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DDU33_10515 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:apor03410]
D DDU33_09285 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D DDU33_10190 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D DDU33_02255 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D DDU33_04305 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D DDU33_04170 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D DDU33_10340 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D DDU33_10210 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D DDU33_09775 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DDU33_07325 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DDU33_10515 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:apor03420]
D DDU33_05990 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D DDU33_09540 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D DDU33_08150 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D DDU33_06910 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D DDU33_00680 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DDU33_09775 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DDU33_10515 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:apor03430]
D DDU33_02450 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D DDU33_01210 DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D DDU33_06405 DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D DDU33_00680 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DDU33_08185 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D DDU33_09960 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D DDU33_08965 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DDU33_07325 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DDU33_09545 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DDU33_06310 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DDU33_04795 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DDU33_06885 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DDU33_09675 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DDU33_02000 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DDU33_00155 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DDU33_01700 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DDU33_05245 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DDU33_10515 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DDU33_06240 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:apor03440]
D DDU33_07325 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DDU33_09545 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DDU33_04790 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D DDU33_07490 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D DDU33_00545 recombination protein RecR K06187 recR; recombination protein RecR
D DDU33_00165 recA; recombinase RecA K03553 recA; recombination protein RecA
D DDU33_09775 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DDU33_06160 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D DDU33_06155 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D DDU33_04855 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D DDU33_02185 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D DDU33_06980 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D DDU33_04120 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D DDU33_10390 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D DDU33_06310 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DDU33_04795 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DDU33_06885 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DDU33_09675 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DDU33_02000 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DDU33_00155 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DDU33_01700 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DDU33_05245 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DDU33_05855 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D DDU33_00565 primosomal replication protein N K02686 priB; primosomal replication protein N
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:apor02010]
D DDU33_03915 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DDU33_03920 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D DDU33_03925 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D DDU33_03930 sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D DDU33_06870 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D DDU33_06865 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D DDU33_06745 molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D DDU33_01820 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D DDU33_08170 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D DDU33_01815 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D DDU33_08165 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D DDU33_01810 ferric ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D DDU33_05685 thiB; thiamine ABC transporter substrate binding subunit K02064 thiB; thiamine transport system substrate-binding protein
D DDU33_00850 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein
D DDU33_00855 thiQ; thiamine ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D DDU33_05150 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D DDU33_10150 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D DDU33_10830 spermidine/putrescine ABC transporter permease PotC K11070 potC; spermidine/putrescine transport system permease protein
D DDU33_10835 spermidine/putrescine ABC transporter permease PotB K11071 potB; spermidine/putrescine transport system permease protein
D DDU33_10840 spermidine/putrescine ABC transporter ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D DDU33_04195 maltose/maltodextrin ABC transporter substrate-binding protein MalE K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D DDU33_04190 maltose ABC transporter permease MalF K10109 malF; maltose/maltodextrin transport system permease protein
D DDU33_04185 maltose ABC transporter permease MalG K10110 malG; maltose/maltodextrin transport system permease protein
D DDU33_04200 maltose/maltodextrin ABC transporter ATP-binding protein MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DDU33_00455 phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D DDU33_00460 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D DDU33_00465 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D DDU33_00450 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein
D DDU33_00470 phospholipid ABC transporter ATP-binding protein MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D DDU33_03480 LacI family transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D DDU33_03240 ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D DDU33_03485 ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein
D DDU33_03235 ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein
D DDU33_03230 ribose ABC transporter ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D DDU33_03490 D-xylose ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D DDU33_03225 D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D DDU33_00235 galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein
D DDU33_09610 galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein
D DDU33_00225 galactose/methyl galactoside ABC transporter permease MglC K10541 mglC; methyl-galactoside transport system permease protein
D DDU33_00230 galactose/methyl galactoside ABC transporter ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D DDU33_05050 arginine ABC transporter substrate-binding protein K09997 artI; arginine transport system substrate-binding protein
D DDU33_05060 arginine ABC transporter permease ArtM K09998 artM; arginine transport system permease protein
D DDU33_05055 arginine ABC transporter permease ArtQ K09999 artQ; arginine transport system permease protein
D DDU33_05045 arginine ABC transporter ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D DDU33_03110 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D DDU33_03160 cysteine ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D DDU33_03165 polar amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D DDU33_10290 metQ; methionine ABC transporter substrate-binding protein MetQ K02073 metQ; D-methionine transport system substrate-binding protein
D DDU33_10295 metQ; methionine ABC transporter substrate-binding protein MetQ K02073 metQ; D-methionine transport system substrate-binding protein
D DDU33_10285 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D DDU33_10280 metN; D-methionine ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D DDU33_05140 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D DDU33_05320 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D DDU33_05330 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D DDU33_05335 peptide ABC transporter permease K12369 dppB; dipeptide transport system permease protein
D DDU33_05340 dipeptide ABC transporter permease DppC K12370 dppC; dipeptide transport system permease protein
D DDU33_05345 dipeptide ABC transporter ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein
D DDU33_05350 dppF; dipeptide ABC transporter ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein
D DDU33_09570 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein
D DDU33_09565 peptide ABC transporter permease K19227 sapB; cationic peptide transport system permease protein
D DDU33_09560 antimicrobial peptide ABC transporter permease SapC K19228 sapC; cationic peptide transport system permease protein
D DDU33_09555 peptide ABC transporter ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D DDU33_04510 peptide ABC transporter ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D DDU33_05160 iron ABC transporter substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D DDU33_05875 iron ABC transporter substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D DDU33_05870 Fe(3+)-hydroxamate ABC transporter permease FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D DDU33_05880 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D DDU33_05240 zinc ABC transporter substrate-binding protein ZnuA K09815 znuA; zinc transport system substrate-binding protein
D DDU33_08865 znuB; zinc ABC transporter permease subunit ZnuB K09816 znuB; zinc transport system permease protein
D DDU33_07310 zinc ABC transporter ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D DDU33_08240 metal ABC transporter substrate-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D DDU33_08250 hypothetical protein K11605 sitC; manganese/iron transport system permease protein
D DDU33_08255 iron ABC transporter permease K11606 sitD; manganese/iron transport system permease protein
D DDU33_08245 manganese transporter K11607 sitB; manganese/iron transport system ATP-binding protein
D DDU33_02715 cobalt transporter CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D DDU33_02710 ABC transporter permease K02008 cbiQ; cobalt/nickel transport system permease protein
D DDU33_02705 cobalt ABC transporter ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D DDU33_02725 hypothetical protein K10094 cbiK; nickel transport protein
D DDU33_02720 hypothetical protein K16915 cbiL; nickel transport protein
D DDU33_02520 capsule biosynthesis protein K10107 kpsE; capsular polysaccharide transport system permease protein
D DDU33_02525 sugar ABC transporter permease K09688 kpsM; capsular polysaccharide transport system permease protein
D DDU33_02530 ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D DDU33_01370 ABC transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D DDU33_01365 teichoic acid ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D DDU33_00170 lipoprotein-releasing system transmembrane subunit LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D DDU33_00180 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D DDU33_00175 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D DDU33_04680 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D DDU33_04675 heme ABC transporter permease K02195 ccmC; heme exporter protein C
D DDU33_04670 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D DDU33_04665 heme ABC transporter ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D DDU33_06120 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D DDU33_06125 lipopolysaccharide ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D DDU33_06685 lipopolysaccharide ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D DDU33_10675 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D DDU33_10680 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D DDU33_10300 lipid ABC transporter permease/ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D DDU33_08400 type I secretion system permease/ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D DDU33_10590 multidrug ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D DDU33_09950 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D DDU33_07105 thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D DDU33_08435 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D DDU33_02055 ABC transporter ATP-binding protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D DDU33_08765 ABC transporter ATP-binding protein/permease K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:apor02060]
D DDU33_00840 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D DDU33_00845 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D DDU33_00835 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D DDU33_00860 PTS maltose transporter subunit IIBC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D DDU33_09935 PTS trehalose transporter subunit IIBC K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D DDU33_01110 PTS mannose transporter subunit IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D DDU33_04530 PTS mannose transporter subunit IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D DDU33_04535 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D DDU33_01115 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D DDU33_04540 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D DDU33_01120 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D DDU33_02355 PTS ascorbate-specific transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D DDU33_02350 PTS ascorbate transporter subunit IIC K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D DDU33_06780 PTS fructose transporter subunit IIA K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D DDU33_06790 PTS fructose transporter subunit EIIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D DDU33_06785 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D DDU33_06680 PTS sugar transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:apor03070]
D DDU33_08405 HlyD family type I secretion periplasmic adaptor subunit K11003 hlyD; membrane fusion protein, hemolysin D
D DDU33_08400 type I secretion system permease/ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D DDU33_06475 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D DDU33_06480 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D DDU33_03400 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D DDU33_08675 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D DDU33_02115 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D DDU33_06470 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D DDU33_04060 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DDU33_10745 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DDU33_10685 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D DDU33_01725 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D DDU33_02230 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D DDU33_01500 Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D DDU33_01505 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D DDU33_01510 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:apor02020]
D DDU33_08430 two-component system sensor histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D DDU33_08425 DNA-binding response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D DDU33_08110 two-component sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D DDU33_08115 DNA-binding response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D DDU33_06150 two-component system sensor histidine kinase QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D DDU33_06145 two-component system response regulator QseB K07666 qseB; two-component system, OmpR family, response regulator QseB
D DDU33_03755 torC; pentaheme c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D DDU33_03750 torA; trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D DDU33_03745 molecular chaperone TorD K03533 torD; TorA specific chaperone
D DDU33_09445 hybrid sensor histidine kinase/response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D DDU33_05200 two-component system response regulator ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D DDU33_04800 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D DDU33_03670 citC; [citrate (pro-3S)-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D DDU33_09215 citD; citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein)
D DDU33_09210 citE; citrate (pro-3S)-lyase subunit beta K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D DDU33_09205 citF; citrate lyase subunit alpha K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10]
D DDU33_09200 2-(5'-triphosphoribosyl)-3'-dephospho CoA synthase K13927 citXG; holo-ACP synthase / triphosphoribosyl-dephospho-CoA synthase [EC:2.7.7.61 2.4.2.52]
D DDU33_02540 C4-dicarboxylate ABC transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D DDU33_02590 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D DDU33_07340 nitrate/nitrite two-component system sensor histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D DDU33_00195 DNA-binding response regulator K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D DDU33_02595 fumarate reductase (quinol) flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D DDU33_02600 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D DDU33_02605 fumarate reductase subunit FrdC K00246 frdC; succinate dehydrogenase subunit C
D DDU33_02610 fumarate reductase subunit FrdD K00247 frdD; succinate dehydrogenase subunit D
D DDU33_00930 MFS transporter family glucose-6-phosphate receptor UhpC K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D DDU33_00925 signal transduction histidine-protein kinase/phosphatase UhpB K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D DDU33_00920 DNA-binding response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D DDU33_00915 hexose-6-phosphate:phosphate antiporter K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D DDU33_09155 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D DDU33_07440 glnD; [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D DDU33_03810 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D DDU33_04695 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1
D DDU33_03990 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DDU33_01235 cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DDU33_06020 cytochrome bd-I ubiquinol oxidase subunit CydA K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D DDU33_06025 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D DDU33_02515 sugar ABC transporter substrate-binding protein K01991 wza; polysaccharide biosynthesis/export protein
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:apor02024]
D DDU33_10585 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D DDU33_01095 RNA chaperone Hfq K03666 hfq; host factor-I protein
D DDU33_05585 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D DDU33_05590 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D DDU33_01340 rhamnosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D DDU33_08460 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DDU33_00490 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D DDU33_02780 PhzF family phenazine biosynthesis protein K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
D DDU33_06150 two-component system sensor histidine kinase QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D DDU33_06145 two-component system response regulator QseB K07666 qseB; two-component system, OmpR family, response regulator QseB
D DDU33_02760 antibiotic biosynthesis monooxygenase K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D DDU33_02290 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DDU33_07115 long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DDU33_01235 cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DDU33_07020 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D DDU33_04490 orotate transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D DDU33_07365 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DDU33_10250 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DDU33_07360 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DDU33_07355 ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DDU33_07350 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DDU33_04060 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DDU33_03400 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D DDU33_08675 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D DDU33_02115 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D DDU33_06470 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D DDU33_10745 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DDU33_10685 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D DDU33_01725 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D DDU33_02230 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:apor02030]
D DDU33_04195 maltose/maltodextrin ABC transporter substrate-binding protein MalE K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D DDU33_03480 LacI family transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D DDU33_03240 ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D DDU33_00235 galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein
D DDU33_09610 galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein
D DDU33_05140 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D DDU33_05320 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D DDU33_05330 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
C 02040 Flagellar assembly [PATH:apor02040]
D DDU33_03110 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D DDU33_01525 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D DDU33_06425 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D DDU33_06390 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:apor01501]
D DDU33_00210 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D DDU33_06415 beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D DDU33_07530 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DDU33_07535 transporter K18138 acrB; multidrug efflux pump
D DDU33_06225 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DDU33_02435 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D DDU33_01300 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:apor01502]
D DDU33_04340 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DDU33_10395 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D DDU33_01285 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D DDU33_01280 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D DDU33_04330 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:apor01503]
D DDU33_04575 phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D DDU33_09570 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein
D DDU33_09565 peptide ABC transporter permease K19227 sapB; cationic peptide transport system permease protein
D DDU33_09560 antimicrobial peptide ABC transporter permease SapC K19228 sapC; cationic peptide transport system permease protein
D DDU33_09555 peptide ABC transporter ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D DDU33_04510 peptide ABC transporter ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D DDU33_04940 hypothetical protein K06079 cutF; copper homeostasis protein (lipoprotein)
D DDU33_08430 two-component system sensor histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D DDU33_08425 DNA-binding response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D DDU33_00020 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DDU33_01915 thiol disulfide oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D DDU33_00910 thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D DDU33_07530 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DDU33_07535 transporter K18138 acrB; multidrug efflux pump
D DDU33_06295 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:apor01000]
C 01001 Protein kinases [BR:apor01001]
D DDU33_02470 kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D DDU33_08430 two-component system sensor histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D DDU33_08110 two-component sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D DDU33_06150 two-component system sensor histidine kinase QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D DDU33_09445 hybrid sensor histidine kinase/response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D DDU33_04580 two-component sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D DDU33_07340 nitrate/nitrite two-component system sensor histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D DDU33_00925 signal transduction histidine-protein kinase/phosphatase UhpB K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:apor01009]
D DDU33_06100 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DDU33_05010 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:apor01002]
D DDU33_03815 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D DDU33_09245 prepilin peptidase K02506 hofD; leader peptidase HopD [EC:3.4.23.43]
D DDU33_08795 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D DDU33_10205 hypothetical protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D DDU33_08540 endopeptidase K13695 nlpC; probable lipoprotein NlpC
D DDU33_10115 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D DDU33_03620 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D DDU33_05080 L,D-transpeptidase K21470 ycbB; L,D-transpeptidase YcbB
D DDU33_05980 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D DDU33_05775 oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D DDU33_04155 M13 family peptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D DDU33_04125 pitrilysin K01407 ptrA; protease III [EC:3.4.24.55]
D DDU33_02060 peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D DDU33_06115 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D DDU33_09900 aminopeptidase PepB K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D DDU33_00965 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D DDU33_06720 cytosol nonspecific dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D DDU33_07315 murein DD-endopeptidase MepM K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D DDU33_05280 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D DDU33_08645 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D DDU33_08770 hflB; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D DDU33_05810 protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D DDU33_06270 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D DDU33_08685 penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D DDU33_00480 serine peptidase K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D DDU33_07570 outer membrane-stress sensor serine endopeptidase DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D DDU33_02420 serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DDU33_03520 D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D DDU33_10140 D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D DDU33_09470 serine-type D-Ala-D-Ala carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D DDU33_00135 clpP; ATP-dependent Clp endopeptidase proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D DDU33_07015 endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D DDU33_04090 protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D DDU33_06400 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D DDU33_07475 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D DDU33_05075 carboxy terminal-processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D DDU33_00220 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D DDU33_04990 protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D DDU33_02270 HslU--HslV peptidase proteolytic subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D DDU33_00050 U32 family peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D DDU33_08200 metalloprotease PmbA K03592 pmbA; PmbA protein
D DDU33_02400 metalloprotease TldD K03568 tldD; TldD protein
D DDU33_10360 protease modulator HflC K04087 hflC; modulator of FtsH protease HflC
D DDU33_10365 hflK; FtsH protease activity modulator HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:apor01003]
D DDU33_08330 glycogen synthase GlgA K00703 glgA; starch synthase [EC:2.4.1.21]
D DDU33_09760 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D DDU33_01790 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D DDU33_06225 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DDU33_03705 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:apor01005]
D DDU33_06295 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D DDU33_04985 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D DDU33_04360 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D DDU33_06285 lpxD; UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D DDU33_01750 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D DDU33_00120 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D DDU33_08975 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D DDU33_10575 msbB; lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D DDU33_00040 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D DDU33_04575 phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D DDU33_08995 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D DDU33_04825 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D DDU33_00065 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D DDU33_05190 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D DDU33_02190 KpsF/GutQ family sugar-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D DDU33_03830 lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D DDU33_10145 glycosyltransferase K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D DDU33_03895 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D DDU33_00045 RfaL protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D DDU33_00485 ADP-heptose--LPS heptosyltransferase I K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D DDU33_09580 D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D DDU33_07205 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D DDU33_09485 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D DDU33_03375 ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D DDU33_01340 rhamnosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D DDU33_03705 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:apor01011]
D DDU33_00440 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D DDU33_01230 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D DDU33_04335 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D DDU33_01275 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D DDU33_01295 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D DDU33_04340 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D DDU33_10395 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D DDU33_01985 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D DDU33_01280 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D DDU33_04330 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D DDU33_02175 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D DDU33_06225 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D DDU33_01790 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D DDU33_02435 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D DDU33_01300 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D DDU33_02420 serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D DDU33_09470 serine-type D-Ala-D-Ala carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D DDU33_03520 D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D DDU33_10140 D-alanyl-D-alanine endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D DDU33_09760 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D DDU33_05080 L,D-transpeptidase K21470 ycbB; L,D-transpeptidase YcbB
D DDU33_08685 penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D DDU33_10205 hypothetical protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D DDU33_07315 murein DD-endopeptidase MepM K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D DDU33_08635 lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D DDU33_09970 murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D DDU33_08310 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D DDU33_02245 membrane-bound lytic murein transglycosylase MltC K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D DDU33_04725 membrane-bound lytic murein transglycosylase MltF K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D DDU33_02010 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D DDU33_02425 septal ring lytic transglycosylase RlpA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D DDU33_00020 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DDU33_06840 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:apor01004]
D DDU33_04290 fabD; [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D DDU33_04420 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D DDU33_10700 beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D DDU33_04295 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D DDU33_04095 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D DDU33_06290 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D DDU33_07560 enoyl-[acyl-carrier-protein] reductase FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D DDU33_10310 acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D DDU33_02290 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DDU33_07115 long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DDU33_06395 glycerol-3-phosphate 1-O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D DDU33_04425 phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D DDU33_10660 glycerol-3-phosphate 1-O-acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D DDU33_03645 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:apor01006]
D DDU33_08970 (2E,6E)-farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D DDU33_04280 octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D DDU33_06260 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D DDU33_01220 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D DDU33_01415 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
C 01007 Amino acid related enzymes [BR:apor01007]
D DDU33_04760 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DDU33_08260 glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D DDU33_01420 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DDU33_00895 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D DDU33_09345 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DDU33_05120 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DDU33_06770 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DDU33_05220 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DDU33_00255 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DDU33_09665 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DDU33_09995 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D DDU33_05700 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DDU33_08630 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D DDU33_05440 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DDU33_01660 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DDU33_01630 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DDU33_09125 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DDU33_03600 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DDU33_06255 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DDU33_09160 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DDU33_08555 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DDU33_08550 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DDU33_08385 aspartate/tyrosine/aromatic aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D DDU33_05835 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D DDU33_07735 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DDU33_00335 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D DDU33_01620 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D DDU33_09595 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D DDU33_05960 aspartate aminotransferase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D DDU33_04315 diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D DDU33_01625 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D DDU33_03710 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D DDU33_00535 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D DDU33_07730 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:apor00194]
D DDU33_03215 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D DDU33_03210 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D DDU33_03205 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D DDU33_03200 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D DDU33_03195 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D DDU33_03190 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D DDU33_03185 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D DDU33_03180 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D DDU33_03175 F0F1 ATP synthase subunit I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:apor03000]
D DDU33_06385 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DDU33_04735 transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D DDU33_06630 HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D DDU33_04995 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D DDU33_05260 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D DDU33_00520 HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D DDU33_08515 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D DDU33_03465 DeoR family transcriptional regulator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D DDU33_02340 HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D DDU33_03220 transcriptional repressor PurR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DDU33_01770 XylR family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DDU33_04485 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D DDU33_09940 HTH-type transcriptional regulator TreR K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D DDU33_09640 HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D DDU33_03145 HTH-type transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D DDU33_03955 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D DDU33_06525 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D DDU33_00780 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D DDU33_01245 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D DDU33_05255 HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D DDU33_01995 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D DDU33_08475 leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DDU33_04225 HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D DDU33_10755 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D DDU33_03005 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D DDU33_10655 ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D DDU33_01585 transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
D DDU33_01235 cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DDU33_09170 fumarate/nitrate reduction transcriptional regulator Fnr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D DDU33_09430 Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D DDU33_03080 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D DDU33_02875 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D DDU33_03030 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D DDU33_01225 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D DDU33_05385 DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DDU33_09765 trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D DDU33_05210 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D DDU33_08655 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D DDU33_02205 hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D DDU33_09535 molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D DDU33_10415 transcriptional regulator K07726 K07726; putative transcriptional regulator
D DDU33_01160 met regulon transcriptional regulator MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D DDU33_04130 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D DDU33_07680 ribbon-helix-helix domain-containing protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D DDU33_09300 type II toxin-antitoxin system RelB/DinJ family antitoxin K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D DDU33_10825 transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D DDU33_05025 transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism
D DDU33_08485 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D DDU33_09575 transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D DDU33_00720 hypothetical protein K07733 alpA; prophage regulatory protein
D DDU33_10020 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator
D DDU33_05680 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D DDU33_08535 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
C 03021 Transcription machinery [BR:apor03021]
D DDU33_02090 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D DDU33_03495 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D DDU33_03500 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D DDU33_01805 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D DDU33_01525 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D DDU33_07135 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D DDU33_00695 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D DDU33_00830 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D DDU33_10030 RNA polymerase-associated protein RapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D DDU33_08275 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D DDU33_06195 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D DDU33_03405 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D DDU33_08220 stringent starvation protein A K03599 sspA; stringent starvation protein A
D DDU33_08225 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
D DDU33_07130 transcriptional regulator K03597 rseA; sigma-E factor negative regulatory protein RseA
D DDU33_07125 negative regulator of sigmaE K03598 rseB; sigma-E factor negative regulatory protein RseB
D DDU33_07120 transcriptional regulator K03803 rseC; sigma-E factor negative regulatory protein RseC
D DDU33_05680 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D DDU33_09465 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D DDU33_09895 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D DDU33_10445 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:apor03019]
D DDU33_05235 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D DDU33_09990 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D DDU33_07480 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D DDU33_01315 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D DDU33_00030 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D DDU33_08505 ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D DDU33_07405 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D DDU33_06435 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D DDU33_06425 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DDU33_07415 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D DDU33_10445 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D DDU33_06100 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D DDU33_04150 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D DDU33_05355 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DDU33_01095 RNA chaperone Hfq K03666 hfq; host factor-I protein
D DDU33_05675 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D DDU33_03655 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D DDU33_09155 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D DDU33_01085 rraA; ribonuclease E activity regulator RraA K02553 rraA; regulator of ribonuclease activity A
D DDU33_10610 ribonuclease E inhibitor RraB K09893 rraB; regulator of ribonuclease activity B
D DDU33_06675 RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
D DDU33_10165 ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:apor03011]
D DDU33_07580 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D DDU33_08760 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D DDU33_03565 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D DDU33_02095 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D DDU33_02130 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D DDU33_00560 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D DDU33_03840 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D DDU33_02145 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D DDU33_07455 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D DDU33_03530 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D DDU33_02100 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D DDU33_03835 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D DDU33_02105 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D DDU33_02150 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D DDU33_09715 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D DDU33_02045 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D DDU33_03580 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D DDU33_00570 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D DDU33_03555 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D DDU33_02170 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D DDU33_01325 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D DDU33_03415 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D DDU33_03550 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D DDU33_03535 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D DDU33_03540 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D DDU33_02155 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D DDU33_02140 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D DDU33_00575 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D DDU33_03420 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D DDU33_03410 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D DDU33_03425 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D DDU33_07450 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D DDU33_02165 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D DDU33_02120 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D DDU33_03570 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D DDU33_02085 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D DDU33_02135 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D DDU33_02030 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D DDU33_06960 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D DDU33_04275 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D DDU33_03560 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D DDU33_03545 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D DDU33_02160 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D DDU33_04270 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D DDU33_04325 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D DDU33_03575 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D DDU33_02125 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D DDU33_01835 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D DDU33_06645 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D DDU33_04430 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D DDU33_04320 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D DDU33_04240 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D DDU33_06965 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D DDU33_01830 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D DDU33_02110 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D DDU33_09175 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D DDU33_01965 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_03270 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_04025 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_04030 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_04655 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_05315 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_10370 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_04635 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_10385 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_05295 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_01980 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_04010 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_03250 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_04020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_03265 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_10375 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_01970 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_04650 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_05310 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:apor03009]
D DDU33_07480 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D DDU33_00030 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D DDU33_07485 era; GTPase Era K03595 era; GTPase
D DDU33_05115 obgE; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D DDU33_05680 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D DDU33_08275 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D DDU33_06195 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D DDU33_03405 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D DDU33_06920 16S rRNA pseudouridine(516) synthase RsuA K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D DDU33_09495 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D DDU33_03590 16S rRNA (cytosine(967)-C(5))-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D DDU33_05250 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D DDU33_04920 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D DDU33_10015 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D DDU33_03090 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D DDU33_01310 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D DDU33_00360 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D DDU33_00945 16S rRNA (guanine(1516)-N(2))-methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D DDU33_05230 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D DDU33_08775 23S rRNA (uridine(2552)-2'-O)-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D DDU33_02440 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D DDU33_06845 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D DDU33_00200 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D DDU33_08145 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D DDU33_05110 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D DDU33_10040 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D DDU33_06420 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D DDU33_06170 TIGR01621 family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D DDU33_10025 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D DDU33_00580 23S rRNA pseudouridine(2605) synthase RluB K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D DDU33_00980 23S rRNA pseudouridine(955/2504/2580) synthase RluC K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D DDU33_06465 23S rRNA pseudouridine(1911/1915/1917) synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D DDU33_10635 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D DDU33_07140 rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D DDU33_04560 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D DDU33_09750 30S ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D DDU33_02040 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D DDU33_01925 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D DDU33_09985 30S ribosomal protein S12 methylthiotransferase accessory protein YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D DDU33_02370 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D DDU33_09460 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D DDU33_01670 ribosomal oxygenase K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D DDU33_05235 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D DDU33_09990 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D DDU33_06835 Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D DDU33_07405 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D DDU33_01080 ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D DDU33_00515 small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D DDU33_09480 der; ribosome biogenesis GTPase Der K03977 engA; GTPase
D DDU33_01090 GTPase HflX K03665 hflX; GTPase
D DDU33_00015 tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DDU33_01800 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D DDU33_08300 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D DDU33_08270 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D DDU33_02445 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D DDU33_08375 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D DDU33_06795 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
D DDU33_08195 ribosome-associated protein K09889 yjgA; ribosome-associated protein
D DDU33_08980 raiA; ribosome-associated translation inhibitor RaiA K05809 raiA; ribosome-associated inhibitor A
D DDU33_01060 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D DDU33_04435 23S rRNA accumulation protein YceD K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:apor03016]
D DDU33_00240 ribonuclease K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D DDU33_09355 multifunctional CCA addition/repair protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D DDU33_04760 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DDU33_03600 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D DDU33_05220 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D DDU33_09665 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DDU33_06770 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D DDU33_08260 glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D DDU33_05120 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DDU33_09995 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D DDU33_05700 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DDU33_09160 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D DDU33_08630 asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D DDU33_06255 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D DDU33_09125 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D DDU33_09345 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D DDU33_00255 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D DDU33_05440 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D DDU33_08555 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D DDU33_08550 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D DDU33_01420 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DDU33_00895 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D DDU33_01470 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D DDU33_00505 purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D DDU33_04415 tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D DDU33_01410 tsaA; tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D DDU33_08985 tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D DDU33_08305 tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D DDU33_01055 tRNA pseudouridine(13) synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D DDU33_09425 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DDU33_00015 tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D DDU33_01220 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D DDU33_04055 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D DDU33_03095 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D DDU33_06660 selenide, water dikinase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D DDU33_00630 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D DDU33_04245 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D DDU33_09010 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D DDU33_05645 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D DDU33_00425 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D DDU33_07565 exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D DDU33_08480 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D DDU33_10815 energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D DDU33_01660 glyQ; glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D DDU33_01630 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D DDU33_05430 Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D DDU33_07400 tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D DDU33_04865 tRNA dihydrouridine(20/20a) synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D DDU33_05380 tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D DDU33_07155 tRNA dihydrouridine(16) synthase DusC K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D DDU33_05275 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D DDU33_08750 cmoA; carboxy-S-adenosyl-L-methionine synthase CmoA K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D DDU33_09980 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D DDU33_01485 trmA; tRNA (uridine(54)-C5)-methyltransferase TrmA K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D DDU33_02035 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D DDU33_07140 rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D DDU33_09140 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D DDU33_05565 trmL; tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D DDU33_01535 methyltransferase domain-containing protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D DDU33_09095 tRNA pseudouridine(65) synthase TruC K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D DDU33_06170 TIGR01621 family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D DDU33_10025 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D DDU33_05560 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D DDU33_10330 tRNA 2-thiocytidine(32) synthetase TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D DDU33_10620 sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D DDU33_02580 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D DDU33_02575 tusC; sulfurtransferase complex subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D DDU33_02570 sulfurtransferase complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D DDU33_06895 sulfurtransferase TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D DDU33_09415 iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D DDU33_00435 hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
D DDU33_07230 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D DDU33_09070 queA; tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D DDU33_05500 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D DDU33_05505 queD; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D DDU33_05510 radical SAM protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D DDU33_07210 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D DDU33_04285 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D DDU33_09025 tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D DDU33_10350 tRNA 4-thiouridine(8) synthase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D DDU33_04050 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D DDU33_08380 GNAT family N-acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D DDU33_08455 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D DDU33_06455 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D DDU33_00025 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D DDU33_06750 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D DDU33_01315 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D DDU33_07415 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:apor03012]
D DDU33_07605 stress response translation initiation inhibitor YciH K03113 EIF1; translation initiation factor 1
D DDU33_08280 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D DDU33_06970 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D DDU33_10000 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D DDU33_08755 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D DDU33_01860 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D DDU33_03850 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D DDU33_03845 fusA; elongation factor G K02355 fusA; elongation factor G
D DDU33_03595 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D DDU33_04805 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D DDU33_08705 ribosome recycling factor K02838 frr; ribosome recycling factor
D DDU33_04815 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D DDU33_01065 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D DDU33_05000 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D DDU33_08590 efp; elongation factor P K02356 efp; elongation factor P
D DDU33_02585 elongation factor P--(R)-beta-lysine ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D DDU33_08580 epmB; EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D DDU33_05180 elongation factor P hydroxylase K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D DDU33_06300 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D DDU33_01520 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D DDU33_09050 ribosome alternative rescue factor ArfA K09890 arfA; alternative ribosome-rescue factor
C 03110 Chaperones and folding catalysts [BR:apor03110]
D DDU33_05465 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D DDU33_00130 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D DDU33_02280 hslU; HslU--HslV peptidase ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D DDU33_04150 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D DDU33_09390 hscA; Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA
D DDU33_05355 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DDU33_04145 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D DDU33_07150 co-chaperone DjlA K05801 djlA; DnaJ like chaperone protein
D DDU33_09410 Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB
D DDU33_00645 Hsp33 family molecular chaperone HslO K04083 hslO; molecular chaperone Hsp33
D DDU33_10155 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D DDU33_00640 ribosome-associated heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D DDU33_05360 groES; co-chaperone GroES K04078 groES; chaperonin GroES
D DDU33_08770 hflB; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D DDU33_03180 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D DDU33_01725 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D DDU33_03745 molecular chaperone TorD K03533 torD; TorA specific chaperone
D DDU33_09350 peptidyl-prolyl cis-trans isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D DDU33_10255 peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D DDU33_02560 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D DDU33_02305 peptidylprolyl isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D DDU33_04365 peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D DDU33_09490 peptidylprolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D DDU33_06940 trxA; thioredoxin K03671 TXN; thioredoxin
D DDU33_00075 co-chaperone YbbN K05838 ybbN; putative thioredoxin
D DDU33_00420 glutaredoxin K03674 grxA; glutaredoxin 1
D DDU33_00540 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D DDU33_01915 thiol disulfide oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D DDU33_00910 thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D DDU33_06515 disulfide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D DDU33_07320 bifunctional protein-disulfide isomerase/oxidoreductase DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DDU33_05175 protein-disulfide reductase DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D DDU33_01890 DsbE family thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
D DDU33_10720 dihydroneopterin aldolase K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:apor04131]
D DDU33_06775 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D DDU33_10345 hypothetical protein K07192 FLOT; flotillin
D DDU33_09500 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DDU33_07080 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D DDU33_05370 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system
C 03051 Proteasome [BR:apor03051]
C 03032 DNA replication proteins [BR:apor03032]
D DDU33_10125 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D DDU33_06385 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DDU33_10500 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D DDU33_08545 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D DDU33_07585 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D DDU33_04800 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D DDU33_08575 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D DDU33_01320 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D DDU33_09545 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DDU33_06310 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DDU33_04795 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DDU33_01700 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DDU33_09675 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DDU33_02000 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DDU33_00155 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DDU33_06885 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DDU33_05245 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DDU33_00510 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D DDU33_09775 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DDU33_10515 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DDU33_06240 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D DDU33_08740 replication initiation negative regulator SeqA K03645 seqA; negative modulator of initiation of replication
D DDU33_04660 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D DDU33_06930 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D DDU33_09920 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D DDU33_07420 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D DDU33_00205 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D DDU33_08510 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D DDU33_08680 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:apor03036]
D DDU33_06385 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DDU33_07480 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D DDU33_10345 hypothetical protein K07192 FLOT; flotillin
D DDU33_09620 DNA-binding protein H-NS-like protein K03746 hns; DNA-binding protein H-NS
D DDU33_10500 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D DDU33_08545 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D DDU33_07585 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D DDU33_04800 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D DDU33_00375 SIS domain-containing protein K12961 diaA; DnaA initiator-associating protein
D DDU33_09745 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D DDU33_05385 DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DDU33_01095 RNA chaperone Hfq K03666 hfq; host factor-I protein
D DDU33_08475 leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DDU33_07060 nucleoid-associated protein YejK K06899 ndpA; nucleoid-associated protein
D DDU33_07435 chromosome partition protein MukB K03632 mukB; chromosome partition protein MukB
D DDU33_07430 chromosome partition protein MukE K03804 mukE; chromosome partition protein MukE
D DDU33_07425 chromosome partition protein MukF K03633 mukF; chromosome partition protein MukF
D DDU33_04350 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D DDU33_08925 cell division protein FtsB K05589 ftsB; cell division protein FtsB
D DDU33_10680 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D DDU33_01300 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D DDU33_08470 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D DDU33_01305 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D DDU33_00940 cell division protein FtsN K03591 ftsN; cell division protein FtsN
D DDU33_04345 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D DDU33_01270 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D DDU33_10675 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D DDU33_04355 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D DDU33_09225 hypothetical protein K03531 ftsZ; cell division protein FtsZ
D DDU33_10510 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA
D DDU33_10480 cell division protein ZapA K09888 zapA; cell division protein ZapA
D DDU33_08445 cell division protein ZapB K09892 zapB; cell division protein ZapB
D DDU33_00020 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D DDU33_07530 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DDU33_01245 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D DDU33_08740 replication initiation negative regulator SeqA K03645 seqA; negative modulator of initiation of replication
D DDU33_08885 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D DDU33_08880 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D DDU33_08875 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D DDU33_02430 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D DDU33_07420 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D DDU33_00205 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D DDU33_03095 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D DDU33_03090 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D DDU33_01595 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D DDU33_04045 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D DDU33_10245 iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D DDU33_00125 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D DDU33_10605 YihA family ribosome biogenesis GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:apor03400]
D DDU33_09440 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D DDU33_10190 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D DDU33_02255 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D DDU33_09285 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D DDU33_10735 mutT; 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D DDU33_01250 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D DDU33_04170 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D DDU33_04305 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D DDU33_10340 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D DDU33_10210 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D DDU33_07325 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DDU33_10515 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DDU33_09775 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D DDU33_09540 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D DDU33_08150 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D DDU33_06910 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D DDU33_00680 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D DDU33_03495 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D DDU33_03500 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D DDU33_02090 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D DDU33_01805 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D DDU33_05990 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D DDU33_02450 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D DDU33_01210 DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D DDU33_06405 DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D DDU33_08185 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D DDU33_09960 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D DDU33_08965 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DDU33_06310 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D DDU33_04795 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D DDU33_01700 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D DDU33_09675 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D DDU33_02000 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D DDU33_00155 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D DDU33_06885 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DDU33_05245 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DDU33_09545 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DDU33_06240 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D DDU33_06980 recB; exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D DDU33_04120 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D DDU33_10390 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D DDU33_00165 recA; recombinase RecA K03553 recA; recombination protein RecA
D DDU33_06160 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D DDU33_06155 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D DDU33_04855 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D DDU33_05855 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D DDU33_00565 primosomal replication protein N K02686 priB; primosomal replication protein N
D DDU33_09265 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D DDU33_04790 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D DDU33_02185 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D DDU33_07490 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D DDU33_00545 recombination protein RecR K06187 recR; recombination protein RecR
D DDU33_01205 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D DDU33_05625 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D DDU33_05760 subtype I-C CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D DDU33_08495 DUF853 domain-containing protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D DDU33_06930 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D DDU33_09920 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D DDU33_08510 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D DDU33_10500 HU family DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D DDU33_05385 DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D DDU33_08545 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D DDU33_07585 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D DDU33_06435 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D DDU33_09620 DNA-binding protein H-NS-like protein K03746 hns; DNA-binding protein H-NS
D DDU33_05815 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D DDU33_06400 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D DDU33_00160 recombination regulator RecX K03565 recX; regulatory protein
D DDU33_00005 rep; DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D DDU33_09520 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D DDU33_04875 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D DDU33_04870 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:apor03029]
D DDU33_08280 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D DDU33_06970 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D DDU33_08755 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D DDU33_01860 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D DDU33_03850 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D DDU33_03845 fusA; elongation factor G K02355 fusA; elongation factor G
D DDU33_07485 era; GTPase Era K03595 era; GTPase
D DDU33_01420 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D DDU33_09665 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D DDU33_05700 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D DDU33_05120 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D DDU33_09545 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D DDU33_06275 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D DDU33_04150 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D DDU33_10155 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D DDU33_05355 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DDU33_05360 groES; co-chaperone GroES K04078 groES; chaperonin GroES
D DDU33_04145 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D DDU33_09425 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D DDU33_09410 Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB
D DDU33_00540 grxD; Grx4 family monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D DDU33_10245 iron-sulfur cluster carrier protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D DDU33_04060 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:apor02000]
D DDU33_10300 lipid ABC transporter permease/ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D DDU33_08400 type I secretion system permease/ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D DDU33_10590 multidrug ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D DDU33_09950 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D DDU33_07105 thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D DDU33_08435 MacB family efflux pump subunit K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D DDU33_02055 ABC transporter ATP-binding protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D DDU33_08765 ABC transporter ATP-binding protein/permease K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D DDU33_06945 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D DDU33_03915 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D DDU33_03920 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D DDU33_03925 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D DDU33_03930 sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D DDU33_06870 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D DDU33_06865 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein
D DDU33_06745 molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D DDU33_01820 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D DDU33_08170 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D DDU33_01815 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D DDU33_08165 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D DDU33_01810 ferric ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D DDU33_05685 thiB; thiamine ABC transporter substrate binding subunit K02064 thiB; thiamine transport system substrate-binding protein
D DDU33_00850 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein
D DDU33_00855 thiQ; thiamine ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D DDU33_05150 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D DDU33_10150 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D DDU33_10830 spermidine/putrescine ABC transporter permease PotC K11070 potC; spermidine/putrescine transport system permease protein
D DDU33_10835 spermidine/putrescine ABC transporter permease PotB K11071 potB; spermidine/putrescine transport system permease protein
D DDU33_10840 spermidine/putrescine ABC transporter ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D DDU33_04195 maltose/maltodextrin ABC transporter substrate-binding protein MalE K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D DDU33_04190 maltose ABC transporter permease MalF K10109 malF; maltose/maltodextrin transport system permease protein
D DDU33_04185 maltose ABC transporter permease MalG K10110 malG; maltose/maltodextrin transport system permease protein
D DDU33_04200 maltose/maltodextrin ABC transporter ATP-binding protein MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D DDU33_00235 galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein
D DDU33_09610 galactose/glucose ABC transporter substrate-binding protein MglB K10540 mglB; methyl-galactoside transport system substrate-binding protein
D DDU33_00225 galactose/methyl galactoside ABC transporter permease MglC K10541 mglC; methyl-galactoside transport system permease protein
D DDU33_00230 galactose/methyl galactoside ABC transporter ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D DDU33_03480 LacI family transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D DDU33_03240 ribose ABC transporter substrate-binding protein RbsB K10439 rbsB; ribose transport system substrate-binding protein
D DDU33_03485 ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein
D DDU33_03235 ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein
D DDU33_03230 ribose ABC transporter ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D DDU33_03490 D-xylose ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D DDU33_00460 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D DDU33_00465 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D DDU33_00470 phospholipid ABC transporter ATP-binding protein MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D DDU33_00455 phospholipid-binding protein MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D DDU33_00450 STAS domain-containing protein K07122 mlaB; phospholipid transport system transporter-binding protein
D DDU33_05050 arginine ABC transporter substrate-binding protein K09997 artI; arginine transport system substrate-binding protein
D DDU33_05060 arginine ABC transporter permease ArtM K09998 artM; arginine transport system permease protein
D DDU33_05055 arginine ABC transporter permease ArtQ K09999 artQ; arginine transport system permease protein
D DDU33_05045 arginine ABC transporter ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D DDU33_03110 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D DDU33_03160 cysteine ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D DDU33_03165 polar amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D DDU33_10290 metQ; methionine ABC transporter substrate-binding protein MetQ K02073 metQ; D-methionine transport system substrate-binding protein
D DDU33_10295 metQ; methionine ABC transporter substrate-binding protein MetQ K02073 metQ; D-methionine transport system substrate-binding protein
D DDU33_10285 ABC transporter permease K02072 metI; D-methionine transport system permease protein
D DDU33_10280 metN; D-methionine ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D DDU33_07235 ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D DDU33_09530 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D DDU33_09525 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D DDU33_05140 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D DDU33_05320 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D DDU33_05330 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D DDU33_05335 peptide ABC transporter permease K12369 dppB; dipeptide transport system permease protein
D DDU33_05340 dipeptide ABC transporter permease DppC K12370 dppC; dipeptide transport system permease protein
D DDU33_05345 dipeptide ABC transporter ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein
D DDU33_05350 dppF; dipeptide ABC transporter ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein
D DDU33_09570 ABC transporter substrate-binding protein K19226 sapA; cationic peptide transport system substrate-binding protein
D DDU33_09565 peptide ABC transporter permease K19227 sapB; cationic peptide transport system permease protein
D DDU33_09560 antimicrobial peptide ABC transporter permease SapC K19228 sapC; cationic peptide transport system permease protein
D DDU33_09555 peptide ABC transporter ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D DDU33_04510 peptide ABC transporter ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D DDU33_07365 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DDU33_10250 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D DDU33_07360 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D DDU33_07355 ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein
D DDU33_07350 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D DDU33_05160 iron ABC transporter substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D DDU33_05875 iron ABC transporter substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D DDU33_05870 Fe(3+)-hydroxamate ABC transporter permease FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D DDU33_05880 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D DDU33_01195 hemin ABC transporter substrate-binding protein K25132 hmuT; heme transport system substrate-binding protein
D DDU33_01190 iron ABC transporter K25133 hmuU; heme transport system permease protein
D DDU33_01185 heme ABC transporter ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D DDU33_08595 enterochelin ABC transporter substrate-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D DDU33_08605 iron ABC transporter permease K25283 yclO; iron-siderophore transport system permease protein
D DDU33_08600 iron ABC transporter permease K25284 yclN; iron-siderophore transport system permease protein
D DDU33_08610 iron ABC transporter ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D DDU33_06340 helical backbone metal receptor K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D DDU33_06345 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein
D DDU33_06350 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D DDU33_05240 zinc ABC transporter substrate-binding protein ZnuA K09815 znuA; zinc transport system substrate-binding protein
D DDU33_08865 znuB; zinc ABC transporter permease subunit ZnuB K09816 znuB; zinc transport system permease protein
D DDU33_07310 zinc ABC transporter ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D DDU33_08240 metal ABC transporter substrate-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D DDU33_08250 hypothetical protein K11605 sitC; manganese/iron transport system permease protein
D DDU33_08255 iron ABC transporter permease K11606 sitD; manganese/iron transport system permease protein
D DDU33_08245 manganese transporter K11607 sitB; manganese/iron transport system ATP-binding protein
D DDU33_02710 ABC transporter permease K02008 cbiQ; cobalt/nickel transport system permease protein
D DDU33_02715 cobalt transporter CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D DDU33_02705 cobalt ABC transporter ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D DDU33_02725 hypothetical protein K10094 cbiK; nickel transport protein
D DDU33_02720 hypothetical protein K16915 cbiL; nickel transport protein
D DDU33_02525 sugar ABC transporter permease K09688 kpsM; capsular polysaccharide transport system permease protein
D DDU33_02520 capsule biosynthesis protein K10107 kpsE; capsular polysaccharide transport system permease protein
D DDU33_02530 ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D DDU33_01370 ABC transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D DDU33_01365 teichoic acid ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D DDU33_06120 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein
D DDU33_06125 lipopolysaccharide ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein
D DDU33_06685 lipopolysaccharide ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D DDU33_00170 lipoprotein-releasing system transmembrane subunit LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D DDU33_00180 lipoprotein-releasing ABC transporter permease subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D DDU33_00175 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D DDU33_04680 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D DDU33_04675 heme ABC transporter permease K02195 ccmC; heme exporter protein C
D DDU33_04670 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D DDU33_04665 heme ABC transporter ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D DDU33_10675 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D DDU33_10680 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D DDU33_06875 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D DDU33_00400 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D DDU33_06880 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D DDU33_10455 transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D DDU33_04525 transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D DDU33_06975 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump
D DDU33_01765 D-xylose transporter XylE K08138 xylE; MFS transporter, SP family, xylose:H+ symportor
D DDU33_10090 lacY; MFS transporter K02532 lacY; MFS transporter, OHS family, lactose permease
D DDU33_00615 MFS transporter K26744 vanK; MFS transporter, AAHS family, vanillate permease
D DDU33_04960 3-phenylpropionate MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D DDU33_00915 hexose-6-phosphate:phosphate antiporter K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D DDU33_03330 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D DDU33_01140 MFS transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D DDU33_00930 MFS transporter family glucose-6-phosphate receptor UhpC K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D DDU33_00210 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D DDU33_00775 tetracycline efflux MFS transporter Tet(B) K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D DDU33_06925 Bcr/CflA family drug resistance efflux transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D DDU33_07500 sugar transporter K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein
D DDU33_02890 MFS transporter K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D DDU33_00840 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D DDU33_00845 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D DDU33_06780 PTS fructose transporter subunit IIA K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D DDU33_00835 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D DDU33_03470 PTS sugar transporter subunit IIB K02778 ptsGb; glucose PTS system EIIB component [EC:2.7.1.199]
D DDU33_00860 PTS maltose transporter subunit IIBC K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D DDU33_09935 PTS trehalose transporter subunit IIBC K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D DDU33_06790 PTS fructose transporter subunit EIIBC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D DDU33_01110 PTS mannose transporter subunit IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D DDU33_04530 PTS mannose transporter subunit IIAB K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D DDU33_04535 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D DDU33_01115 PTS mannose/fructose/sorbose transporter subunit IIC K02795 manY; mannose PTS system EIIC component
D DDU33_04540 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D DDU33_01120 PTS mannose transporter subunit IID K02796 manZ; mannose PTS system EIID component
D DDU33_02355 PTS ascorbate-specific transporter subunit IIA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D DDU33_02350 PTS ascorbate transporter subunit IIC K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D DDU33_06680 PTS sugar transporter subunit IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D DDU33_08945 PTS mannose transporter subunit IID K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D DDU33_01400 aquaporin Z K06188 aqpZ; aquaporin Z
D DDU33_03315 aquaporin K02440 glpF; glycerol uptake facilitator
D DDU33_04700 ammonia channel protein K03320 amt; ammonium transporter, Amt family
D DDU33_02455 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DDU33_03065 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D DDU33_08220 stringent starvation protein A K03599 sspA; stringent starvation protein A
D DDU33_06900 BAX inhibitor protein K19416 yccA; modulator of FtsH protease
D DDU33_05795 focA; formate transporter FocA K06212 focA; formate transporter
D DDU33_02620 large-conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D DDU33_08725 mechanosensitive channel MscK K05802 mscK; potassium-dependent mechanosensitive channel
D DDU33_08730 mechanosensitive channel MscK K05802 mscK; potassium-dependent mechanosensitive channel
D DDU33_00985 mechanosensitive ion channel protein MscS K03442 mscS; small conductance mechanosensitive channel
D DDU33_02700 urea transporter K08717 utp; urea transporter
D DDU33_00085 exbB; TonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB
D DDU33_00090 exbD; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D DDU33_06050 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D DDU33_06055 colicin uptake protein TolR K03560 tolR; biopolymer transport protein TolR
D DDU33_01495 magnesium/nickel/cobalt transporter CorA K03284 corA; magnesium transporter
D DDU33_02545 chromosome condensation protein CrcB K06199 crcB; fluoride exporter
D DDU33_03130 hypothetical protein K08363 merT; mercuric ion transport protein
D DDU33_03135 copper chaperone K08364 merP; periplasmic mercuric ion binding protein
D DDU33_06165 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D DDU33_04445 magnesium/cobalt efflux protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D DDU33_04205 lamB; maltoporin K02024 lamB; maltoporin
D DDU33_04075 porin OmpA K03286 TC.OOP; OmpA-OmpF porin, OOP family
D DDU33_04080 porin OmpA K03286 TC.OOP; OmpA-OmpF porin, OOP family
D DDU33_00685 hypothetical protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D DDU33_09435 hypothetical protein K06076 fadL; long-chain fatty acid transport protein
D DDU33_06335 TonB-dependent receptor K16092 btuB; vitamin B12 transporter
D DDU33_03380 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D DDU33_10710 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D DDU33_07165 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D DDU33_05390 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DDU33_07495 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DDU33_05860 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D DDU33_02515 sugar ABC transporter substrate-binding protein K01991 wza; polysaccharide biosynthesis/export protein
D DDU33_06275 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D DDU33_06460 outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD
D DDU33_07065 outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE
D DDU33_07095 hypothetical protein K07278 tamA; translocation and assembly module TamA
D DDU33_07100 DUF490 domain-containing protein K09800 tamB; translocation and assembly module TamB
D DDU33_05965 hypothetical protein K21449 ata; trimeric autotransporter adhesin
D DDU33_01940 hypothetical protein K21449 ata; trimeric autotransporter adhesin
D DDU33_05165 hypothetical protein K21449 ata; trimeric autotransporter adhesin
D DDU33_07295 hypothetical protein K21449 ata; trimeric autotransporter adhesin
D DDU33_06690 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D DDU33_06695 lptC; LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D DDU33_09680 LPS assembly protein LptD K04744 lptD; LPS-assembly protein
D DDU33_09670 hypothetical protein K03643 lptE; LPS-assembly lipoprotein
D DDU33_08395 hemolysin K11005 hlyA; hemolysin A
D DDU33_09735 magnesium/cobalt transporter CorC K06189 corC; hemolysin (HlyC) family protein
D DDU33_09515 murein hydrolase transporter LrgA K06518 cidA; holin-like protein
D DDU33_06075 arginine:ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D DDU33_04550 amino acid permease K03758 arcD; arginine:ornithine antiporter / lysine permease
D DDU33_08700 fieF; divalent metal cation transporter FieF K13283 fieF; ferrous-iron efflux pump FieF
D DDU33_10595 ZIP family metal transporter K07238 TC.ZIP; zinc transporter, ZIP family
D DDU33_07535 transporter K18138 acrB; multidrug efflux pump
D DDU33_03365 QacE family quaternary ammonium compound efflux SMR transporter K03297 emrE; small multidrug resistance pump
D DDU33_02680 QacE family quaternary ammonium compound efflux SMR transporter K03297 emrE; small multidrug resistance pump
D DDU33_01440 EamA family transporter K08978 TC.BAT1; bacterial/archaeal transporter family protein
D DDU33_05840 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D DDU33_05845 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D DDU33_04490 orotate transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D DDU33_10335 sodium:proton antiporter K07084 yuiF; putative amino acid transporter
D DDU33_02200 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D DDU33_03155 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D DDU33_02540 C4-dicarboxylate ABC transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D DDU33_02590 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D DDU33_07185 lactate permease K03303 lutP; lactate permease
D DDU33_05170 calcium/sodium antiporter K07301 yrbG; cation:H+ antiporter
D DDU33_01150 sodium/panthothenate symporter K14392 panF; sodium/pantothenate symporter
D DDU33_10465 putP; sodium/proline symporter PutP K11928 putP; sodium/proline symporter
D DDU33_04135 putP; sodium/proline symporter PutP K11928 putP; sodium/proline symporter
D DDU33_07225 serine/threonine transporter SstT K07862 sstT; serine/threonine transporter
D DDU33_00800 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D DDU33_09700 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D DDU33_01445 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D DDU33_06520 nhaB; sodium/proton antiporter K03314 nhaB; Na+:H+ antiporter, NhaB family
D DDU33_09615 Na+/H+ antiporter K18218 tet35; tetracycline resistance efflux pump
D DDU33_10260 sodium:proton antiporter K03316 nhaP; Na+:H+ antiporter
D DDU33_08370 potassium transporter K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D DDU33_02630 potassium transporter K03498 trkH; trk/ktr system potassium uptake protein
D DDU33_03585 Trk system potassium transporter TrkA K03499 trkA; trk/ktr system potassium uptake protein
D DDU33_10460 uracil permease K02824 uraA; uracil permease
D DDU33_06495 permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D DDU33_05420 adenine permease PurP K06901 pbuG; adenine/guanine/hypoxanthine permease
D DDU33_05630 amino acid permease K03834 tyrP; tyrosine-specific transport protein
D DDU33_05635 tyrosine transporter K03834 tyrP; tyrosine-specific transport protein
D DDU33_03695 transposase K03835 mtr; tryptophan-specific transport protein
D DDU33_04140 serine transporter K03837 sdaC; serine transporter
D DDU33_09590 transporter K26603 yhjV; inner membrane transport protein
D DDU33_01565 C4-dicarboxylate ABC transporter permease K21393 yiaN; TRAP-type transport system large permease protein
D DDU33_01570 TRAP transporter small permease K21394 yiaM; TRAP-type transport system small permease protein
D DDU33_01555 hypothetical protein K21395 yiaO; TRAP-type transport system periplasmic protein
D DDU33_03070 arsB; arsenical-resistance protein K03325 ACR3; arsenite transporter
D DDU33_02175 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D DDU33_06305 malonate transporter K13936 mdcF; malonate transporter and related proteins
D DDU33_09855 autotransporter K24180 mleP; malate permease and related proteins
D DDU33_08890 amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D DDU33_06180 hypothetical protein K05835 rhtC; threonine efflux protein
D DDU33_04505 branched-chain amino acid ABC transporter permease K26605 azlC; branched chain amino acid efflux pump
D DDU33_04500 AzlD family protein K26606 azlD; branched chain amino acid efflux pump
D DDU33_09060 AI-2E family transporter K03548 perM; putative permease
D DDU33_05285 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter K09125 yhhQ; queuosine precursor transporter
D DDU33_03985 hypothetical protein K22736 VIT; vacuolar iron transporter family protein
D DDU33_10005 MarC family transcriptional regulator K05595 marC; multiple antibiotic resistance protein
D DDU33_01270 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D DDU33_09000 cobalt transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D DDU33_00095 energy transducer TonB K03832 tonB; periplasmic protein TonB
D DDU33_06070 pal; peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein
D DDU33_06060 cell envelope integrity protein TolA K03646 tolA; colicin import membrane protein
D DDU33_06065 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D DDU33_04605 sodium ion-translocating decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D DDU33_04610 oadA; oxaloacetate decarboxylase subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D DDU33_04615 oxaloacetate decarboxylase gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D DDU33_03750 torA; trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D DDU33_03755 torC; pentaheme c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D DDU33_03745 molecular chaperone TorD K03533 torD; TorA specific chaperone
D DDU33_08405 HlyD family type I secretion periplasmic adaptor subunit K11003 hlyD; membrane fusion protein, hemolysin D
D DDU33_07530 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DDU33_07265 efflux transporter periplasmic adaptor subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D DDU33_04880 nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D DDU33_06985 ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D DDU33_06990 ferrous iron transporter B K04759 feoB; ferrous iron transport protein B
D DDU33_04690 heme lyase NrfEFG subunit NrfE K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:apor02044]
D DDU33_08400 type I secretion system permease/ATPase K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D DDU33_08405 HlyD family type I secretion periplasmic adaptor subunit K11003 hlyD; membrane fusion protein, hemolysin D
D DDU33_05105 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D DDU33_04105 hypothetical protein K02680 ppdB; prepilin peptidase dependent protein B
D DDU33_04115 hypothetical protein K02681 ppdC; prepilin peptidase dependent protein C
D DDU33_09260 prepilin-type cleavage/methylation domain-containing protein K02682 ppdD; prepilin peptidase dependent protein D
D DDU33_09255 type II/IV secretion system protein K02504 hofB; protein transport protein HofB
D DDU33_09250 type II secretion system F family protein K02505 hofC; protein transport protein HofC
D DDU33_06200 type IV pilus secretin PilQ K02507 hofQ; protein transport protein HofQ
D DDU33_04405 hypothetical protein K02221 yggT; YggT family protein
D DDU33_03880 helix-hairpin-helix domain-containing protein K02237 comEA; competence protein ComEA
D DDU33_02300 competence protein ComEA K02237 comEA; competence protein ComEA
D DDU33_09080 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D DDU33_07320 bifunctional protein-disulfide isomerase/oxidoreductase DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D DDU33_10745 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D DDU33_01725 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D DDU33_06475 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D DDU33_03400 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D DDU33_06480 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D DDU33_08675 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D DDU33_02115 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D DDU33_02230 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D DDU33_10685 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D DDU33_06470 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D DDU33_04060 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D DDU33_01500 Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D DDU33_01505 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D DDU33_01510 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:apor02042]
D DDU33_08395 hemolysin K11005 hlyA; hemolysin A
D DDU33_06165 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D DDU33_04445 magnesium/cobalt efflux protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:apor02022]
D DDU33_08430 two-component system sensor histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D DDU33_08425 DNA-binding response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D DDU33_08110 two-component sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D DDU33_08115 DNA-binding response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D DDU33_06150 two-component system sensor histidine kinase QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D DDU33_06145 two-component system response regulator QseB K07666 qseB; two-component system, OmpR family, response regulator QseB
D DDU33_09445 hybrid sensor histidine kinase/response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D DDU33_05200 two-component system response regulator ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D DDU33_04580 two-component sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D DDU33_04585 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D DDU33_07340 nitrate/nitrite two-component system sensor histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D DDU33_00195 DNA-binding response regulator K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D DDU33_00925 signal transduction histidine-protein kinase/phosphatase UhpB K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D DDU33_00920 DNA-binding response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
C 02035 Bacterial motility proteins [BR:apor02035]
D DDU33_03110 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D DDU33_05105 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:apor04812]
D DDU33_08885 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D DDU33_04355 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D DDU33_09225 hypothetical protein K03531 ftsZ; cell division protein FtsZ
D DDU33_04350 cell division protein FtsA K03590 ftsA; cell division protein FtsA
C 04147 Exosome [BR:apor04147]
D DDU33_06425 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D DDU33_09500 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D DDU33_04520 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D DDU33_05370 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D DDU33_10345 hypothetical protein K07192 FLOT; flotillin
D DDU33_05355 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D DDU33_04150 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D DDU33_10785 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D DDU33_08780 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D DDU33_01860 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D DDU33_03850 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D DDU33_00505 purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D DDU33_02290 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DDU33_07115 long-chain-fatty-acid--CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D DDU33_04740 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D DDU33_06890 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D DDU33_05095 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D DDU33_10130 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D DDU33_05970 class 1 fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D DDU33_10075 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D DDU33_08315 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D DDU33_03310 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D DDU33_03990 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D DDU33_01515 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D DDU33_04385 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D DDU33_10270 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D DDU33_08820 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D DDU33_00625 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D DDU33_01200 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D DDU33_07080 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:apor02048]
D DDU33_05760 subtype I-C CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D DDU33_05765 cas2; CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D DDU33_05710 CRISPR-associated helicase/endonuclease Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D DDU33_05750 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D DDU33_05740 cas8c; type I-C CRISPR-associated protein Cas8c/Csd1 K19117 csd1; CRISPR-associated protein Csd1
D DDU33_05745 cas7c; type I-C CRISPR-associated protein Cas7/Csd2 K19118 csd2; CRISPR-associated protein Csd2
D DDU33_05735 cas5c; type I-C CRISPR-associated protein Cas5 K19119 cas5d; CRISPR-associated protein Cas5d
D DDU33_02930 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D DDU33_02920 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D DDU33_02910 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D DDU33_06240 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D DDU33_06385 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D DDU33_07675 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE
D DDU33_02800 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family K06218 relE; mRNA interferase RelE/StbE
D DDU33_09295 plasmid stabilization system protein K06218 relE; mRNA interferase RelE/StbE
D DDU33_07680 ribbon-helix-helix domain-containing protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D DDU33_09300 type II toxin-antitoxin system RelB/DinJ family antitoxin K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D DDU33_02805 plasmid stabilization protein K18923 stbD; antitoxin StbD
D DDU33_02470 kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D DDU33_08660 type II toxin-antitoxin system HigB family toxin K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D DDU33_08655 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D DDU33_03515 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K18829 mvpT; antitoxin VapB
D DDU33_02880 VapC toxin family PIN domain ribonuclease K07062 fitB; toxin FitB [EC:3.1.-.-]
D DDU33_04355 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D DDU33_09225 hypothetical protein K03531 ftsZ; cell division protein FtsZ
D DDU33_08885 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D DDU33_07420 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D DDU33_00205 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D DDU33_04760 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D DDU33_03825 hypothetical protein K09159 cptB; antitoxin CptB
D DDU33_09425 IscS subfamily cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:apor01504]
D DDU33_00775 tetracycline efflux MFS transporter Tet(B) K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein
D DDU33_09615 Na+/H+ antiporter K18218 tet35; tetracycline resistance efflux pump
D DDU33_08110 two-component sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D DDU33_08115 DNA-binding response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D DDU33_07530 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D DDU33_07535 transporter K18138 acrB; multidrug efflux pump
D DDU33_10755 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D DDU33_03005 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D DDU33_08515 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:apor00536]
D DDU33_07285 heme utilization protein K15125 fhaB; filamentous hemagglutinin
D DDU33_00745 heme utilization protein K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:apor03100]
D DDU33_03260 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DDU33_04755 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DDU33_04645 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DDU33_05305 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D DDU33_03995 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DDU33_04710 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DDU33_04715 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DDU33_09660 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D DDU33_02235 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DDU33_10100 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D DDU33_00150 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DDU33_00145 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DDU33_04035 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D DDU33_08180 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D DDU33_10790 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DDU33_10795 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D DDU33_01975 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DDU33_04015 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DDU33_10380 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D DDU33_03685 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DDU33_06000 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DDU33_06010 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DDU33_08175 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DDU33_01870 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D DDU33_04000 tRNA-His K14226 tRNA-His; tRNA His
D DDU33_03255 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DDU33_04640 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DDU33_05300 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D DDU33_03680 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DDU33_06005 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DDU33_10800 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DDU33_08670 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DDU33_09955 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D DDU33_02015 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DDU33_02020 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DDU33_02025 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D DDU33_08265 tRNA-Met K14230 tRNA-Met; tRNA Met
D DDU33_07045 tRNA-Met K14230 tRNA-Met; tRNA Met
D DDU33_09965 tRNA-Met K14230 tRNA-Met; tRNA Met
D DDU33_10805 tRNA-Met K14230 tRNA-Met; tRNA Met
D DDU33_02240 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D DDU33_04005 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DDU33_09655 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D DDU33_04705 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DDU33_10820 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DDU33_01490 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DDU33_03355 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D DDU33_01880 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DDU33_01865 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DDU33_03630 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D DDU33_04040 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D DDU33_01875 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D DDU33_07250 tRNA-Val K14237 tRNA-Val; tRNA Val
D DDU33_04765 tRNA-Val K14237 tRNA-Val; tRNA Val
D DDU33_04770 tRNA-Val K14237 tRNA-Val; tRNA Val
D DDU33_04775 tRNA-Val K14237 tRNA-Val; tRNA Val
D DDU33_04780 tRNA-Val K14237 tRNA-Val; tRNA Val
D DDU33_01950 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D DDU33_04635 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_10385 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_05295 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_01980 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_04010 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_03250 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D DDU33_04020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_03265 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_10375 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_01970 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_04650 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_05310 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D DDU33_01965 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_03270 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_04025 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_04030 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_04655 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_05315 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_10370 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D DDU33_08940 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D DDU33_09010 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D DDU33_00825 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D DDU33_07990 dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D DDU33_05920 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D DDU33_09505 msrB; peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D DDU33_00955 cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D DDU33_07200 thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D DDU33_03650 thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D DDU33_03055 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D DDU33_07005 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D DDU33_03790 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D DDU33_08355 quercetin 2,3-dioxygenase K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D DDU33_08360 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D DDU33_06485 non-heme ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D DDU33_06490 non-heme ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D DDU33_03075 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D DDU33_10525 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D DDU33_05780 pflA; pyruvate formate lyase 1-activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D DDU33_03975 NADH oxidoreductase K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D DDU33_04930 tellurite resistance methyltransferase TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D DDU33_10560 maltose O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D DDU33_09740 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D DDU33_03665 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D DDU33_05550 thiamine biosynthesis protein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D DDU33_09710 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D DDU33_03865 ltrA; group II intron reverse transcriptase/maturase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D DDU33_06045 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D DDU33_07745 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D DDU33_05375 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D DDU33_01780 YchF/TatD family DNA exonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D DDU33_00675 deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D DDU33_06090 nuclease K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D DDU33_08745 esterase K01175 ybfF; esterase [EC:3.1.-.-]
D DDU33_07900 lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D DDU33_03390 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D DDU33_07055 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D DDU33_09110 CYTH domain-containing protein K18446 ygiF; triphosphatase [EC:3.6.1.25]
D DDU33_03360 serine hydrolase family protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D DDU33_06095 cysteine desulfurase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D DDU33_03435 L-fucose mutarotase K02431 fucU; L-fucose mutarotase [EC:5.1.3.29]
D DDU33_05270 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D DDU33_04625 DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D DDU33_10550 electron transport complex subunit RsxD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D DDU33_10545 electron transport complex subunit RsxC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D DDU33_10540 electron transport complex subunit RsxB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D DDU33_05520 NADH:ubiquinone reductase (Na(+)-transporting) subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D DDU33_05525 NADH:ubiquinone reductase (Na(+)-transporting) subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D DDU33_05530 NADH:ubiquinone reductase (Na(+)-transporting) subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D DDU33_05535 NADH:ubiquinone reductase (Na(+)-transporting) subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D DDU33_05540 nqrE; NADH:ubiquinone reductase (Na(+)-transporting) subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D DDU33_05545 NADH:ubiquinone reductase (Na(+)-transporting) subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
C 99981 Carbohydrate metabolism
D DDU33_02265 DNA/RNA nuclease SfsA K06206 sfsA; sugar fermentation stimulation protein A
D DDU33_07180 hypothetical protein K18928 lldE; L-lactate dehydrogenase complex protein LldE
D DDU33_07175 iron-sulfur cluster-binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D DDU33_07170 lactate utilization protein C K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D DDU33_09860 formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein
D DDU33_10555 electron transport complex subunit RsxG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D DDU33_10565 electron transport complex subunit RsxE K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D DDU33_10535 electron transport complex subunit RsxA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D DDU33_01945 FMN-binding protein MioC K06205 mioC; MioC protein
D DDU33_09420 Fe-S cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D DDU33_00055 cytochrome B562 K15536 cybC; soluble cytochrome b562
D DDU33_01015 reductase K02570 napD; periplasmic nitrate reductase NapD
D DDU33_01020 napF; ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF
D DDU33_10715 heme lyase NrfEFG subunit NrfE K04016 nrfE; cytochrome c-type biogenesis protein NrfE
D DDU33_10725 nrfF; heme lyase NrfEFG subunit NrfF K04017 nrfF; formate-dependent nitrite reductase complex subunit NrfF
D DDU33_10730 cytochrome C biogenesis protein K04018 nrfG; formate-dependent nitrite reductase complex subunit NrfG
D DDU33_10650 flavodoxin FldA K03839 fldA; flavodoxin I
D DDU33_00990 cytochrome C K02569 napC; cytochrome c-type protein NapC
D DDU33_01005 ferredoxin-type protein NapG K02573 napG; ferredoxin-type protein NapG
D DDU33_01000 quinol dehydrogenase ferredoxin subunit NapH K02574 napH; ferredoxin-type protein NapH
D DDU33_04900 cytochrome c nitrite reductase pentaheme subunit K04013 nrfB; cytochrome c-type protein NrfB
D DDU33_04895 nrfC; cytochrome c nitrite reductase Fe-S protein K04014 nrfC; protein NrfC
D DDU33_04890 nrfD; cytochrome c nitrite reductase subunit NrfD K04015 nrfD; protein NrfD
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D DDU33_10505 sulfate transporter CysZ K06203 cysZ; CysZ protein
D DDU33_02260 VOC family protein K08234 yaeR; glyoxylase I family protein
D DDU33_05185 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
D DDU33_02295 hypothetical protein K26607 cyuA; putative L-cysteine desulfidase
C 99986 Glycan metabolism
D DDU33_07590 DUF1049 domain-containing protein K08992 lapA; lipopolysaccharide assembly protein A
D DDU33_07595 lipopolysaccharide assembly protein LapB K19804 lapB; lipopolysaccharide assembly protein B
D DDU33_06445 lipooligosaccharide biosynthesis protein LpsA K07270 K07270; glycosyl transferase, family 25
D DDU33_10615 udp-glcnac--lipooligosaccharide n-acetylglucosaminyl glycosyltransferase K07270 K07270; glycosyl transferase, family 25
D DDU33_05900 Lsg locus protein 4 K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D DDU33_06830 heme biosynthesis protein HemY K02498 hemY; HemY protein
C 99988 Secondary metabolism
D DDU33_03640 cell division protein FtsQ K04753 sufI; suppressor of ftsI
D DDU33_01695 FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D DDU33_04590 DoxX family protein K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D DDU33_05065 cold-shock protein K03704 cspA; cold shock protein
D DDU33_05100 RNA-binding transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D DDU33_00395 multidrug ABC transporter ATP-binding protein K13926 rbbA; ribosome-dependent ATPase
C 99975 Protein processing
D DDU33_01715 trigger factor K03545 tig; trigger factor
D DDU33_09885 formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein
D DDU33_02670 urease accessory protein UreE K03187 ureE; urease accessory protein
D DDU33_02665 urease accessory protein UreF K03188 ureF; urease accessory protein
D DDU33_02660 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D DDU33_02655 urease accessory protein K03190 ureD; urease accessory protein
D DDU33_09120 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D DDU33_00870 ATP-dependent protease K07391 comM; magnesium chelatase family protein
D DDU33_02850 DsbA family protein K07396 K07396; putative protein-disulfide isomerase
D DDU33_05515 iron-sulfur cluster biogenesis protein NfuA K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D DDU33_01265 JAB domain-containing protein K03630 radC; DNA repair protein RadC
D DDU33_04950 DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D DDU33_10050 ATP-dependent endonuclease K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D DDU33_00370 YraN family protein K07460 yraN; putative endonuclease
D DDU33_03395 dprA; DNA-protecting protein DprA K04096 smf; DNA processing protein
D DDU33_08870 recombination factor protein RarA K07478 ycaJ; putative ATPase
D DDU33_00010 hypothetical protein K07479 yrdD; putative DNA topoisomerase
D DDU33_07305 IS1 family transposase K07480 insB; insertion element IS1 protein InsB
D DDU33_07520 IS30-like element ISApl1 family transposase K07482 K07482; transposase, IS30 family
D DDU33_09185 IS30-like element ISApl1 family transposase K07482 K07482; transposase, IS30 family
D DDU33_00705 IS30-like element ISApl1 family transposase K07482 K07482; transposase, IS30 family
D DDU33_09725 IS30-like element ISApl1 family transposase K07482 K07482; transposase, IS30 family
D DDU33_05725 IS30-like element ISApl1 family transposase K07482 K07482; transposase, IS30 family
D DDU33_01560 IS30-like element ISApl1 family transposase K07482 K07482; transposase, IS30 family
D DDU33_05865 IS30-like element ISApl1 family transposase K07482 K07482; transposase, IS30 family
D DDU33_06855 IS30-like element ISApl1 family transposase K07482 K07482; transposase, IS30 family
D DDU33_02945 IS30-like element ISApl1 family transposase K07482 K07482; transposase, IS30 family
D DDU33_02955 IS30-like element ISApl1 family transposase K07482 K07482; transposase, IS30 family
D DDU33_04465 IS110 family transposase K07486 K07486; transposase
D DDU33_10060 IS110 family transposase K07486 K07486; transposase
D DDU33_02475 IS110 family transposase K07486 K07486; transposase
D DDU33_07240 IS110 family transposase K07486 K07486; transposase
D DDU33_00285 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase
D DDU33_00330 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase
D DDU33_02275 tnpA; IS200/IS605 family transposase K07491 rayT; REP-associated tyrosine transposase
D DDU33_10265 IS3 family transposase K07497 K07497; putative transposase
D DDU33_09290 IS3 family transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D DDU33_00550 nucleoid-associated protein, YbaB/EbfC family K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D DDU33_08620 phosphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
D DDU33_06655 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D DDU33_04450 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D DDU33_08815 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D DDU33_05365 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D DDU33_04300 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D DDU33_09905 sodium transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D DDU33_05930 NupC/NupG family nucleoside CNT transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D DDU33_03950 anion permease K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D DDU33_09195 hypothetical protein K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D DDU33_05825 putative transporter K07085 K07085; putative transport protein
C 99978 Cell growth
D DDU33_10315 septation protein A K06190 ispZ; intracellular septation protein
D DDU33_03370 hypothetical protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D DDU33_07085 hypothetical protein K22719 envC; murein hydrolase activator
C 99993 Cell motility
D DDU33_03525 DNA transformation protein K07343 tfoX; DNA transformation protein and related proteins
C 99995 Signaling proteins
D DDU33_05070 RNA chaperone ProQ K03607 proQ; ProP effector
D DDU33_09165 universal stress protein K06149 uspA; universal stress protein A
D DDU33_00415 typA; translational GTPase TypA K06207 typA; GTP-binding protein
D DDU33_08625 SH3 domain-containing protein K07184 ygiM; SH3 domain protein
D DDU33_05005 hemolysin regulation protein AhpA K07186 smp; membrane protein
D DDU33_05015 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D DDU33_09770 lolA; outer-membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D DDU33_08855 lipoprotein localization factor LolB K02494 lolB; outer membrane lipoprotein LolB
D DDU33_01165 hypothetical protein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D DDU33_03700 hypothetical protein K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D DDU33_05130 hypothetical protein K06077 slyB; outer membrane lipoprotein SlyB
D DDU33_01030 murein hydrolase activator NlpD K06194 nlpD; lipoprotein NlpD
D DDU33_07410 lipoprotein NlpI K05803 nlpI; lipoprotein NlpI
D DDU33_03120 capsule biosynthesis protein K07265 kpsS; capsular polysaccharide export protein
D DDU33_03115 beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase K07266 kpsC; capsular polysaccharide export protein
D DDU33_03885 GlcNAc transferase K07268 oapA; opacity associated protein
D DDU33_05460 hypothetical protein K07275 ompW; outer membrane protein
D DDU33_03900 DUF560 domain-containing protein K07280 K07280; outer membrane protein
D DDU33_09370 hypothetical protein K07280 K07280; outer membrane protein
D DDU33_09790 hypothetical protein K07280 K07280; outer membrane protein
D DDU33_10405 hypothetical protein K07280 K07280; outer membrane protein
D DDU33_02075 hypothetical protein K07280 K07280; outer membrane protein
D DDU33_10010 hypothetical protein K07286 yajG; uncharacterized lipoprotein
D DDU33_00390 HlyD family secretion protein K01993 ABC-2.TX; HlyD family secretion protein
D DDU33_06110 hypothetical protein K11744 tqsA; AI-2 transport protein TqsA
D DDU33_01935 glycine zipper 2TM domain-containing protein K04062 osmB; osmotically inducible lipoprotein OsmB
D DDU33_04685 cytochrome c maturation protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D DDU33_01900 cytochrome c-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D DDU33_05450 DUF4115 domain-containing protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D DDU33_06440 iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D DDU33_01180 hutX; heme utilization cystosolic carrier protein HutX K07227 chuX; heme iron utilization protein
D DDU33_05415 hypothetical protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
B
B 09194 Poorly characterized
C 99996 General function prediction only
D DDU33_10120 colicin V synthesis protein K03558 cvpA; membrane protein required for colicin V production
D DDU33_00275 GNAT family N-acetyltransferase K02348 elaA; ElaA protein
D DDU33_10195 autonomous glycyl radical cofactor GrcA K06866 grcA; autonomous glycyl radical cofactor
D DDU33_00410 patatin K07001 K07001; NTE family protein
D DDU33_01395 iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D DDU33_01475 virulence factor BrkB family protein K07058 K07058; membrane protein
D DDU33_10625 hypothetical protein K07113 fxsA; UPF0716 protein FxsA
D DDU33_00140 hypothetical protein K02426 sufE; cysteine desulfuration protein SufE
D DDU33_09945 lysogenization regulator HflD K07153 hflD; high frequency lysogenization protein
D DDU33_06715 LemA family protein K03744 lemA; LemA protein
D DDU33_02555 SlyX protein K03745 slyX; SlyX protein
D DDU33_00245 SprT family zinc-dependent metalloprotease K02742 sprT; SprT protein
D DDU33_09630 hypothetical protein K03748 sanA; SanA protein
D DDU33_00865 hypothetical protein K03808 pqiA; paraquat-inducible protein A
D DDU33_00610 DUF1304 domain-containing protein K08987 K08987; putative membrane protein
D DDU33_07160 TIGR01620 family protein K08990 ycjF; putative membrane protein
D DDU33_03305 hypothetical protein K08996 yagU; putative membrane protein
D DDU33_03100 hypothetical protein K09858 K09858; SEC-C motif domain protein
D DDU33_04210 maltose operon protein MalM K05775 malM; maltose operon periplasmic protein
D DDU33_04390 alkylphosphonate utilization protein K06193 phnA; protein PhnA
C 99997 Function unknown
D DDU33_06705 methanol dehydrogenase K06872 K06872; uncharacterized protein
D DDU33_02775 hypothetical protein K06889 K06889; uncharacterized protein
D DDU33_09115 hypothetical protein K06918 K06918; uncharacterized protein
D DDU33_08690 L-cystine transporter K06956 K06956; uncharacterized protein
D DDU33_10275 N-acetyltransferase K06975 K06975; uncharacterized protein
D DDU33_07505 hypothetical protein K07014 K07014; uncharacterized protein
D DDU33_05145 transcriptional regulator K07034 K07034; uncharacterized protein
D DDU33_08465 hypothetical protein K07054 K07054; uncharacterized protein
D DDU33_05020 TIGR01777 family protein K07071 K07071; uncharacterized protein
D DDU33_02640 C4-dicarboxylate ABC transporter substrate-binding protein K07080 K07080; uncharacterized protein
D DDU33_09280 hypothetical protein K07090 K07090; uncharacterized protein
D DDU33_03660 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D DDU33_06500 metallophosphoesterase K07098 K07098; uncharacterized protein
D DDU33_03140 YtfJ family protein K07109 K07109; uncharacterized protein
D DDU33_06250 hypothetical protein K07112 K07112; uncharacterized protein
D DDU33_07550 YeeE/YedE family protein K07112 K07112; uncharacterized protein
D DDU33_03015 histidine kinase K07118 K07118; uncharacterized protein
D DDU33_00365 penicillin-binding protein activator K07121 K07121; uncharacterized protein
D DDU33_05400 hypothetical protein K07126 K07126; uncharacterized protein
D DDU33_02810 ATPase K07133 K07133; uncharacterized protein
D DDU33_05925 hypothetical protein K07149 K07149; uncharacterized protein
D DDU33_04250 membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D DDU33_04400 YggU family protein K09131 K09131; uncharacterized protein
D DDU33_02415 DUF493 domain-containing protein K09158 K09158; uncharacterized protein
D DDU33_09810 YcgN family cysteine cluster protein K09160 K09160; uncharacterized protein
D DDU33_10305 hypothetical protein K09780 K09780; uncharacterized protein
D DDU33_09720 DUF808 domain-containing protein K09781 K09781; uncharacterized protein
D DDU33_01740 DUF454 domain-containing protein K09790 K09790; uncharacterized protein
D DDU33_04975 DUF465 domain-containing protein K09794 K09794; uncharacterized protein
D DDU33_07090 hypothetical protein K09798 K09798; uncharacterized protein
D DDU33_06740 RnfH family protein K09801 K09801; uncharacterized protein
D DDU33_07710 DUF496 domain-containing protein K09802 K09802; uncharacterized protein
D DDU33_04395 DUF535 domain-containing protein K09824 virK; uncharacterized protein
D DDU33_05555 (Na+)-NQR maturation NqrM K05952 K05952; uncharacterized protein
D DDU33_07460 peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D DDU33_09235 DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein
D DDU33_10495 DUF416 domain-containing protein K09891 K09891; uncharacterized protein
D DDU33_09695 Der GTPase-activating protein YihI K09894 K09894; uncharacterized protein
D DDU33_10485 YecA family protein K09895 K09895; uncharacterized protein
D DDU33_00905 DUF1040 domain-containing protein K09896 K09896; uncharacterized protein
D DDU33_01480 DUF413 domain-containing protein K09897 K09897; uncharacterized protein
D DDU33_01240 hypothetical protein K09898 K09898; uncharacterized protein
D DDU33_10325 DUF412 domain-containing protein K09899 K09899; uncharacterized protein
D DDU33_04925 DUF440 domain-containing protein K09901 K09901; uncharacterized protein
D DDU33_08570 hypothetical protein K09902 K09902; uncharacterized protein
D DDU33_07510 hypothetical protein K09904 K09904; uncharacterized protein
D DDU33_05125 VOC family protein K09907 K09907; uncharacterized protein
D DDU33_07445 DUF1043 domain-containing protein K09908 K09908; uncharacterized protein
D DDU33_09730 hypothetical protein K09909 K09909; uncharacterized protein
D DDU33_09705 hypothetical protein K09910 K09910; uncharacterized protein
D DDU33_04085 macrodomain Ter protein MatP K09911 K09911; uncharacterized protein
D DDU33_09100 YoaH family protein K09917 K09917; uncharacterized protein
D DDU33_04410 DUF469 domain-containing protein K09923 K09923; uncharacterized protein
D DDU33_08650 DUF1508 domain-containing protein K09946 K09946; uncharacterized protein
D DDU33_03970 hypothetical protein K09968 K09968; uncharacterized protein
D DDU33_08615 TIGR00153 family protein K07220 K07220; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 14, 2024