+F Repair protein KO
#
DNA Repair and Recombination Proteins - Auxenochlorella protothecoides
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D F751_6485 Methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D F751_6204 Activating signal cointegrator 1 complex subunit 3 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D F751_0839 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E F751_5490 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E F751_1015 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E F751_4679 N-glycosylase/DNA lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E F751_6996 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E F751_5145 DNA-(apurinic or apyrimidinic site) lyase 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F F751_3702 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F F751_6509 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F F751_1341 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F F751_6056 DNA polymerase delta subunit 3 K03504 POLD3; DNA polymerase delta subunit 3
F F751_1740 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
F F751_1741 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F F751_0448 DNA polymerase epsilon catalytic subunit A K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F F751_5726 DNA polymerase epsilon subunit 2 K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F F751_2620 Nuclear transcription factor Y subunit C-2 K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7]
E F751_4080 Proliferating cell nuclear antigen large form K04802 PCNA; proliferating cell nuclear antigen
E F751_6358 Proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E F751_4969 Flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E F751_3039 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E F751_6493 Tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E F751_0358 Bifunctional polynucleotide phosphatase/kinase K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E F751_2729 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F F751_3215 DNA repair protein complementing XP-C cells-like protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F F751_5662 putative ubiquitin receptor RAD23a K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F F751_6626 E3 ubiquitin-protein ligase RBX1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F F751_2615 Cullin-4 K10609 CUL4; cullin 4
F F751_3719 DNA damage-binding protein 1a K10610 DDB1; DNA damage-binding protein 1
F F751_3019 Protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F F751_1706 ATP-dependent helicase rhp16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F F751_1389 DNA-directed RNA polymerase II subunit 1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F F751_4378 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F F751_1773 DNA-directed RNA polymerases II, IV and V subunit 3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F F751_4131 DNA-directed RNA polymerase II 16 kDa polypeptide K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F F751_1971 DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F F751_3455 DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F F751_2377 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F F751_6084 DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F F751_6990 DNA-directed RNA polymerase II subunit RPB9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F F751_3708 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F F751_5285 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F F751_2750 DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F F751_6626 E3 ubiquitin-protein ligase RBX1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F F751_2615 Cullin-4 K10609 CUL4; cullin 4
F F751_3719 DNA damage-binding protein 1a K10610 DDB1; DNA damage-binding protein 1
F F751_5996 DNA excision repair protein ERCC-8 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F F751_2289 DNA repair protein rhp26 K10841 ERCC6; DNA excision repair protein ERCC-6
F F751_5211 Transcription elongation factor 1-like protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E F751_1253 DNA repair helicase XPB2 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E F751_3199 DNA repair helicase UVH6 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E F751_6294 putative RNA polymerase II transcription factor B subunit 1-1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E F751_6740 General transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E F751_1984 RNA polymerase II transcription factor B subunit 2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E F751_5309 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E F751_4442 Cyclin-dependent kinase D-1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E F751_4382 Cyclin-H1-1 K06634 CCNH; cyclin H
E F751_6794 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E F751_6468 Replication protein A 70 kDa DNA-binding subunit K07466 RFA1; replication factor A1
E F751_1690 Replication protein A 70 kDa DNA-binding subunit K07466 RFA1; replication factor A1
E F751_4432 Replication factor A protein 2 K10739 RFA2; replication factor A2
E F751_6529 hypothetical protein K10740 RPA3; replication factor A3
D Other NER factors
E F751_6591 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E F751_3039 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E F751_1670 MMS19 nucleotide excision repair protein-like protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E F751_5453 Cullin-3B K03869 CUL3; cullin 3
E F751_1753 Transcription elongation factor B polypeptide 1 K03872 ELOC; elongin-C
E F751_1050 Transcription elongation factor B polypeptide 2 K03873 ELOB; elongin-B
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E F751_2623 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E F751_0287 DNA mismatch repair protein Msh3 K08736 MSH3; DNA mismatch repair protein MSH3
E F751_5249 DNA mismatch repair protein Msh6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E F751_6095 DNA mismatch repair protein Mlh1 K08734 MLH1; DNA mismatch repair protein MLH1
E F751_3125 Mismatch repair endonuclease PMS2 K10858 PMS2; DNA mismatch repair protein PMS2
D DNA polymerase delta complex
E F751_3702 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E F751_6509 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E F751_1341 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E F751_6056 DNA polymerase delta subunit 3 K03504 POLD3; DNA polymerase delta subunit 3
E F751_1740 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
E F751_1741 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E F751_6468 Replication protein A 70 kDa DNA-binding subunit K07466 RFA1; replication factor A1
E F751_1690 Replication protein A 70 kDa DNA-binding subunit K07466 RFA1; replication factor A1
E F751_4432 Replication factor A protein 2 K10739 RFA2; replication factor A2
E F751_6529 hypothetical protein K10740 RPA3; replication factor A3
D RFC (replication factor C)
E F751_5355 Replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E F751_6534 Replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E F751_2265 Replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E F751_4055 Replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E F751_4080 Proliferating cell nuclear antigen large form K04802 PCNA; proliferating cell nuclear antigen
E F751_6358 Proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E F751_2082 Exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E F751_3039 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E F751_6360 Double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
E F751_0413 Fanconi anemia group J protein-like protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D BRCA1-C complex
E F751_6360 Double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
D BRCA complex
E F751_3459 DNA repair protein RAD51-like protein K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E F751_3459 DNA repair protein RAD51-like protein K04482 RAD51; DNA repair protein RAD51
E F751_0232 DNA repair protein RAD51-like protein 2 K10869 RAD51L1; RAD51-like protein 1
E F751_2328 DNA repair protein RAD51-like protein 3 K10870 RAD51L2; RAD51-like protein 2
E F751_4205 DNA repair protein RAD51-like protein 4 K10871 RAD51L3; RAD51-like protein 3
D Rad52 family proteins
D Rad54 family proteins
E F751_1199 DNA repair and recombination protein RAD54-like protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E F751_5418 DNA repair and recombination protein RAD54B K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E F751_0285 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E F751_0285 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E F751_0560 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E F751_4498 hypothetical protein K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E F751_6468 Replication protein A 70 kDa DNA-binding subunit K07466 RFA1; replication factor A1
E F751_1690 Replication protein A 70 kDa DNA-binding subunit K07466 RFA1; replication factor A1
E F751_4432 Replication factor A protein 2 K10739 RFA2; replication factor A2
E F751_6529 hypothetical protein K10740 RPA3; replication factor A3
D Protein phosphatase 4
E F751_6788 Serine/threonine-protein phosphatase PP-X isozyme 1 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E F751_4923 Serine/threonine-protein phosphatase 4 regulatory subunit 3 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E F751_1417 Structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E F751_1492 Structural maintenance of chromosomes protein 6 K22804 SMC6; structural maintenance of chromosomes protein 6
E F751_1273 Non-structural maintenance of chromosomes element 4-like protein A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E F751_5200 Crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E F751_4519 Structure-specific endonuclease subunit SLX1-like protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E F751_4724 Flap endonuclease GEN-like protein 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E F751_5053 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E F751_4700 Fidgetin-like protein 1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E F751_1381 hypothetical protein K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
E F751_6360 Double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
E F751_3129 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E F751_2729 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E F751_6302 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
E F751_0285 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E F751_0560 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E F751_4498 hypothetical protein K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
D Downstream FA components
E F751_0413 Fanconi anemia group J protein-like protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E F751_0294 Fanconi-associated nuclease 1-like protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E F751_3459 DNA repair protein RAD51-like protein K04482 RAD51; DNA repair protein RAD51
E F751_2328 DNA repair protein RAD51-like protein 3 K10870 RAD51L2; RAD51-like protein 2
E F751_5639 Telomere length regulation protein TEL2-like protein K11137 TELO2; telomere length regulation protein
E F751_3870 WD repeat-containing protein 48 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E F751_2617 Phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
D Ubiquitin ligases
D Others
E F751_0651 Telomerase Cajal body protein 1 K23314 WRAP53; telomerase Cajal body protein 1
E F751_2609 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D F751_3292 DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D F751_5051 DNA polymerase iota K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D F751_1873 DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
C B-family DNA polymerases
D F751_1353 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D F751_6840 Ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D F751_0616 Ubiquitin-conjugating enzyme E2 variant 1C K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D F751_2372 Ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D F751_4080 Proliferating cell nuclear antigen large form K04802 PCNA; proliferating cell nuclear antigen
D F751_6358 Proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D F751_2291 HMG box-containing protein C19G7.04 K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D F751_4390 Cell cycle checkpoint control protein RAD9A K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D F751_6534 Replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D F751_2265 Replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D F751_4055 Replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
D F751_5639 Telomere length regulation protein TEL2-like protein K11137 TELO2; telomere length regulation protein
D F751_3122 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D F751_6217 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D F751_3942 Serine/threonine-protein kinase ATR K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D F751_4261 Serine/threonine-protein kinase Nek1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D F751_4119 Vacuolar protein sorting-associated protein 4 K12196 VPS4; vacuolar protein-sorting-associated protein 4
B Other factors with a suspected DNA repair function
C DNA polymerases
D F751_5304 DNA polymerase V K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D F751_2386 Coiled-coil domain-containing protein 111-like protein K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
D F751_0385 Coiled-coil domain-containing protein 111-like protein K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D F751_0737 DNA cross-link repair 1A protein K15340 DCLRE1A; DNA cross-link repair 1A protein
C Helicases
C PSO4 complex
D F751_6782 U-box domain-containing protein 72 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D F751_3367 Cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D F751_6594 Pre-mRNA-splicing factor SPF27-like protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D F751_4399 Protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D F751_5727 Nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D F751_6547 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D F751_4384 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D F751_4412 Ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D F751_6113 Ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D F751_3124 Putative ribonucleoside-diphosphate reductase small chain B K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D F751_6485 Methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D F751_0839 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E F751_5490 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E F751_6331 Putative DNA-3-methyladenine glycosylase YfjP K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E F751_1015 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E F751_5703 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E F751_6996 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
E F751_2905 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E F751_2905 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F CP73_p055 rpoB; beta subunit of RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F F751_0115 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F CP73_p057 rpoC1; beta' subunit of RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F CP73_p056 rpoC1; beta' subunit of RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F F751_0116 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F CP73_p032 rpoA; alpha subunit of RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E F751_3200 Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E F751_2810 Protein RecA K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E F751_2810 Protein RecA K03553 recA; recombination protein RecA
E F751_3152 DNA repair protein RadA-like protein K04485 radA; DNA repair protein RadA/Sms
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F F751_1452 DNA gyrase subunit B, mitochondrial K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D F751_2810 Protein RecA K03553 recA; recombination protein RecA
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D F751_5727 Nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D F751_6547 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D F751_4384 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024