+F Repair protein KO #

  DNA Repair and Recombination Proteins - Arthrobacter sp. LS16

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D AFL94_01295 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AFL94_15595 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E AFL94_02605 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AFL94_00540 Fe-S cluster assembly protein HesB K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AFL94_12840 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AFL94_05325 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AFL94_05520 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AFL94_11725 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AFL94_06530 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AFL94_02690 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AFL94_03340 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AFL94_10640 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D AFL94_01295 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AFL94_15595 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D AFL94_13990 DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E AFL94_02605 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AFL94_00540 Fe-S cluster assembly protein HesB K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AFL94_02860 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E AFL94_07425 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E AFL94_01880 DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E AFL94_09790 formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E AFL94_12840 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AFL94_00920 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AFL94_03345 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ D DNA ligase E AFL94_04015 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E AFL94_10235 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E AFL94_10060 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E AFL94_10160 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E AFL94_10045 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E AFL94_02710 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AFL94_11215 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AFL94_11230 DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AFL94_10235 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E AFL94_04015 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F AFL94_12150 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F AFL94_12145 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AFL94_11960 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F AFL94_08595 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F AFL94_03850 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E AFL94_11690 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E AFL94_11695 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E AFL94_10835 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AFL94_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E AFL94_08515 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E AFL94_02395 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E AFL94_06175 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AFL94_06370 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AFL94_11245 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DNA ligase E AFL94_04015 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AFL94_02710 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AFL94_11215 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AFL94_11230 DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AFL94_17415 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E AFL94_08935 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E AFL94_15670 hypothetical protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AFL94_05220 recombinase RecA K03553 recA; recombination protein RecA E AFL94_09060 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AFL94_09055 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AFL94_09065 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E AFL94_08580 primosomal protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E AFL94_06195 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E AFL94_06390 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E AFL94_06190 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E AFL94_06385 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E AFL94_05220 recombinase RecA K03553 recA; recombination protein RecA E AFL94_00555 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E AFL94_00015 recombinase RecF K03629 recF; DNA replication and repair protein RecF E AFL94_07320 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AFL94_11070 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AFL94_08430 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E AFL94_05500 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E AFL94_09060 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AFL94_09055 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AFL94_09065 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E AFL94_06195 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E AFL94_06390 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E AFL94_06190 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E AFL94_06385 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E AFL94_13170 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E AFL94_15555 hypothetical protein K10979 ku; DNA end-binding protein Ku E AFL94_15560 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AFL94_10675 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AFL94_00030 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AFL94_10705 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AFL94_00025 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AFL94_12760 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F AFL94_14530 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F AFL94_13220 integration host factor K03530 hupB; DNA-binding protein HU-beta F AFL94_13225 integration host factor K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AFL94_08430 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F AFL94_04015 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F AFL94_02320 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AFL94_10060 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F AFL94_10160 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D AFL94_10940 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D AFL94_01795 DNA polymerase K03502 umuC; DNA polymerase V D AFL94_01790 DNA polymerase subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D AFL94_05220 recombinase RecA K03553 recA; recombination protein RecA D AFL94_05260 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D AFL94_05500 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D AFL94_09225 DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D AFL94_17415 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D AFL94_08935 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D AFL94_05225 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D AFL94_05255 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D AFL94_01885 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D AFL94_05325 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AFL94_05520 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AFL94_11725 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AFL94_06530 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AFL94_02690 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AFL94_03340 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AFL94_12265 NUDIX hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D AFL94_05510 ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D AFL94_10640 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AFL94_09330 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AFL94_09325 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024