+F Repair protein KO #

  DNA Repair and Recombination Proteins - Archaeoglobus veneficus

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Arcve_2002 Methylated-DNA--protein-cysteinemethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Arcve_1615 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E Arcve_1387 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E Arcve_2015 Flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E Arcve_0580 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors E Arcve_1503 cyclic nucleotide-binding protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] E Arcve_0580 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors E Arcve_1387 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E Arcve_0580 DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D Arcve_1387 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Arcve_0395 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Arcve_1756 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Arcve_0813 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Arcve_2002 Methylated-DNA--protein-cysteinemethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Arcve_0624 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Arcve_1615 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Arcve_0206 Xylose isomerase domain-containing protein TIM barrel K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E Arcve_1661 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E Arcve_1826 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Arcve_0032 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Arcve_0321 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Arcve_1134 DNA mismatch repair protein MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E Arcve_0333 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DNA ligase D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Arcve_2115 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Arcve_2114 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Arcve_1826 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Arcve_0032 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Arcve_0321 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor E Arcve_0779 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E Arcve_0172 DNA repair and recombination protein radA K04483 radA; DNA repair protein RadA E Arcve_2104 DNA repair and recombination protein radB K04484 radB; DNA repair protein RadB E Arcve_1229 Resolvase, Holliday junction-type K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E Arcve_2115 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Arcve_2114 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E Arcve_1842 ski2-type helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E Arcve_0208 DNA repair protein K10979 ku; DNA end-binding protein Ku E Arcve_0209 DNA polymerase LigD, ligase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Arcve_1333 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Arcve_1323 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Arcve_0470 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Arcve_1826 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Arcve_0032 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Arcve_0321 phosphoesterase RecJ domain protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D Arcve_0622 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Arcve_2088 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D Arcve_0395 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Arcve_1756 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Arcve_0813 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Arcve_1225 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D Arcve_0364 protein of unknown function DUF650 K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024