+D GENES KO
#
KEGG Orthology (KO) - Burkholderia cepacia GG4
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:bct00010]
D GEM_2566 bifunctional glucokinase/RpiR family transcriptional regulator K00845 glk; glucokinase [EC:2.7.1.2]
D GEM_1510 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GEM_2506 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GEM_0807 fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GEM_1159 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D GEM_2884 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GEM_0805 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D GEM_0582 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D GEM_2838 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D GEM_1321 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GEM_0806 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D GEM_1438 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D GEM_5342 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D GEM_1291 pyruvate dehydrogenase subunit E1 K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D GEM_1587 Alpha/beta hydrolase fold:Biotin/lipoyl attachment K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GEM_1292 dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GEM_1923 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_1293 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_4746 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D GEM_1655 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D GEM_0330 alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GEM_4221 cytochrome c, class I K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5]
D GEM_4395 cytochrome c, class I K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_0125 Aldehyde Dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D GEM_1224 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_2137 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_3469 putative AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_4565 CoA-binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D GEM_2897 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D GEM_2630 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GEM_5227 aldehyde dehydrogenase K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D GEM_4146 Phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C 00020 Citrate cycle (TCA cycle) [PATH:bct00020]
D GEM_4968 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D GEM_0896 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D GEM_4815 Citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1]
D GEM_4826 Aconitate hydratase @ 2-methylisocitrate dehydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D GEM_0906 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GEM_0907 Isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GEM_1925 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D GEM_1924 dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GEM_1923 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_1293 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_0789 Succinyl-CoA ligase K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D GEM_0788 succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D GEM_4490 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D GEM_4818 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D GEM_4817 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D GEM_4820 putative succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D GEM_4819 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D GEM_1221 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D GEM_2430 fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D GEM_4822 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GEM_5392 malate--quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D GEM_4146 Phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D GEM_5342 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D GEM_1291 pyruvate dehydrogenase subunit E1 K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D GEM_1587 Alpha/beta hydrolase fold:Biotin/lipoyl attachment K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GEM_1292 dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:bct00030]
D GEM_1510 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GEM_2564 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D GEM_5781 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D GEM_2565 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D GEM_1232 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D GEM_1084 3-carboxymuconate cyclase-like protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D GEM_4846 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D GEM_2989 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D GEM_2885 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D GEM_1071 transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2]
D GEM_1881 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D GEM_1811 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D GEM_1970 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D GEM_2630 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GEM_0637 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D GEM_2861 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D GEM_2860 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D GEM_5227 aldehyde dehydrogenase K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D GEM_3905 glucose-methanol-choline oxidoreductase K19813 gdh; glucose dehydrogenase [EC:1.1.5.9]
D GEM_3560 glucose dehydrogenase K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2]
D GEM_4396 glucose-methanol-choline oxidoreductase K06151 E1.1.99.3A; gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3]
D GEM_2222 gluconate 2-dehydrogenase K06151 E1.1.99.3A; gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3]
D GEM_4397 Gluconate 2-dehydrogenase, membrane-bound, gamma subunit K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3]
D GEM_2221 gluconate 2-dehydrogenase K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3]
D GEM_1682 Gluconate 2-dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D GEM_2415 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D GEM_2858 carbohydrate kinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D GEM_1641 ribokinase sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D GEM_1680 ribokinase sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D GEM_0807 fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GEM_2506 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:bct00040]
D GEM_4684 D-galactarate dehydratase/Altronate hydrolase domain-containing protein K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7]
D GEM_3241 mandelate racemase/muconate lactonizing protein K08323 rspA; mannonate dehydratase [EC:4.2.1.8]
D GEM_3239 mannitol dehydrogenase K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D GEM_3242 putative dehydrogenase K08322 rspB; L-gulonate 5-dehydrogenase [EC:1.1.1.380]
D GEM_4928 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GEM_2469 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GEM_1990 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GEM_4786 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GEM_3243 malate/L-lactate dehydrogenase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D GEM_2989 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D GEM_0828 carbohydrate kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D GEM_0844 Sugar (pentulose and hexulose) kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D GEM_0845 mannitol dehydrogenase domain-containing protein K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D GEM_2898 short-chain dehydrogenase/reductase SDR K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175]
D GEM_3980 NADP-dependent fatty aldehyde dehydrogenase AldH K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D GEM_4479 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D GEM_5879 2,5-dioxopentanoate dehydrogenase (NAD+) K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00051 Fructose and mannose metabolism [PATH:bct00051]
D GEM_1893 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D GEM_0836 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D GEM_0467 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D GEM_4413 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D GEM_4930 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D GEM_2651 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D GEM_2630 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GEM_4793 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D GEM_2645 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D GEM_4640 putative dehydrogenase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D GEM_3407 short-chain dehydrogenase/reductase SDR K18333 E1.1.1.435; L-fucose dehydrogenase [EC:1.1.1.435]
D GEM_3411 amidohydrolase K07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120]
D GEM_3406 mandelate racemase/muconate lactonizing protein K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68]
D GEM_3404 short-chain dehydrogenase/reductase SDR K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D GEM_3405 putative fumarylacetoacetate (FAA) hydrolase family protein K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26]
D GEM_2506 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GEM_0835 sorbitol dehydrogenase K08261 E1.1.99.21; D-sorbitol dehydrogenase (acceptor) [EC:1.1.99.21]
D GEM_0845 mannitol dehydrogenase domain-containing protein K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D GEM_0807 fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GEM_1159 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D GEM_4345 levanase K03332 fruA; fructan beta-fructosidase [EC:3.2.1.80]
D GEM_4794 NAD-dependent epimerase/dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
D GEM_2644 NAD-dependent epimerase/dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
D GEM_0577 sugar transport PTS system IIa component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:bct00052]
D GEM_2897 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D GEM_2634 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D GEM_3825 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D GEM_1990 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GEM_4786 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GEM_2630 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GEM_2566 bifunctional glucokinase/RpiR family transcriptional regulator K00845 glk; glucokinase [EC:2.7.1.2]
D GEM_0837 tagatose-bisphosphate aldolase noncatalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D GEM_0771 Mandelate racemase/muconate lactonizing enzyme K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D GEM_4764 galactonate dehydratase, putative K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D GEM_2904 2-keto-3-deoxy-galactonokinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D GEM_2903 KDPG and KHG aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
C 00053 Ascorbate and aldarate metabolism [PATH:bct00053]
D GEM_4928 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GEM_2469 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GEM_4640 putative dehydrogenase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
D GEM_3243 malate/L-lactate dehydrogenase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_2350 mandelate racemase/muconate lactonizing-like protein K01706 gudD; glucarate dehydratase [EC:4.2.1.40]
D GEM_0209 glucarate dehydratase (GDH) (GlucD) K01706 gudD; glucarate dehydratase [EC:4.2.1.40]
D GEM_0319 2-dehydro-3-deoxyglucarate aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20]
D GEM_5608 Galactose 1-dehydrogenase K13873 araA; L-arabinose 1-dehydrogenase [EC:1.1.1.376]
D GEM_5612 SMP-30/Gluconolaconase/LRE domain protein K13874 araB; L-arabinonolactonase [EC:3.1.1.15]
D GEM_5606 dihydroxy-acid dehydratase K13875 araC; L-arabonate dehydrase [EC:4.2.1.25]
D GEM_5481 dihydrodipicolinate synthetase K13876 araD; 2-keto-3-deoxy-L-arabinonate dehydratase [EC:4.2.1.43]
D GEM_5607 dihydrodipicolinate synthetase K13876 araD; 2-keto-3-deoxy-L-arabinonate dehydratase [EC:4.2.1.43]
D GEM_3979 dihydrodipicolinate synthase K13876 araD; 2-keto-3-deoxy-L-arabinonate dehydratase [EC:4.2.1.43]
D GEM_5480 L-alanine-DL-glutamate epimerase K25260 lxyD; L-lyxonate dehydratase [EC:4.2.1.176]
D GEM_3980 NADP-dependent fatty aldehyde dehydrogenase AldH K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D GEM_4479 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D GEM_5879 2,5-dioxopentanoate dehydrogenase (NAD+) K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D GEM_5882 5-dehydro-4-deoxyglucarate dehydratase K01707 kdgD; 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41]
D GEM_5883 galactarate dehydratase K01708 garD; galactarate dehydratase [EC:4.2.1.42]
D GEM_3437 mandelate racemase/muconate lactonizing protein K20023 talrD-galrD; L-talarate/galactarate dehydratase [EC:4.2.1.156 4.2.1.42]
D GEM_5230 NAD-dependent epimerase/dehydratase K18981 udh; uronate dehydrogenase [EC:1.1.1.203]
D GEM_3925 amidohydrolase 2 K18982 gli; D-galactarolactone isomerase [EC:5.4.1.4]
C 00500 Starch and sucrose metabolism [PATH:bct00500]
D GEM_4344 levansucrase K00692 sacB; levansucrase [EC:2.4.1.10]
D GEM_1990 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GEM_4786 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GEM_4672 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GEM_2044 cellulose synthase catalytic subunit (UDP-forming) K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D GEM_1036 alpha,alpha-trehalose-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D GEM_2355 alpha,alpha-trehalose-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D GEM_4157 Alpha-trehalose-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D GEM_2356 HAD-superfamily hydrolase, subfamily IIB K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D GEM_3610 Alpha,alpha-trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D GEM_2630 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GEM_2566 bifunctional glucokinase/RpiR family transcriptional regulator K00845 glk; glucokinase [EC:2.7.1.2]
D GEM_1510 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GEM_1893 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D GEM_0836 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D GEM_0467 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:bct00520]
D GEM_2380 Beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D GEM_0619 PTS system N-acetylglucosamine-specific transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D GEM_0616 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D GEM_0151 ATPase BadF/BadG/BcrA/BcrD type K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D GEM_1893 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D GEM_0836 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D GEM_0467 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D GEM_0617 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_4516 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_5016 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_5238 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_0459 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_2155 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D GEM_0460 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D GEM_2841 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D GEM_2483 2-phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D GEM_0734 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D GEM_0733 Nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D GEM_4238 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D GEM_3099 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D GEM_0875 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D GEM_2754 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D GEM_5019 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D GEM_2753 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D GEM_1564 glycosyl transferase family protein K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D GEM_1561 polysaccharide deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D GEM_2566 bifunctional glucokinase/RpiR family transcriptional regulator K00845 glk; glucokinase [EC:2.7.1.2]
D GEM_2630 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GEM_1990 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GEM_4786 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GEM_4928 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GEM_2469 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GEM_2634 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D GEM_3825 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D GEM_0577 sugar transport PTS system IIa component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D GEM_1510 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GEM_4413 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D GEM_4930 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D GEM_2651 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D GEM_4793 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D GEM_2645 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D GEM_4794 NAD-dependent epimerase/dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
D GEM_2644 NAD-dependent epimerase/dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
D GEM_0940 oxidoreductase FAD/NAD(P)-binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
C 00620 Pyruvate metabolism [PATH:bct00620]
D GEM_1224 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_2137 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_3469 putative AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_5342 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D GEM_1291 pyruvate dehydrogenase subunit E1 K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D GEM_1587 Alpha/beta hydrolase fold:Biotin/lipoyl attachment K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GEM_1292 dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GEM_1923 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_1293 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_5402 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D GEM_4110 acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D GEM_4746 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D GEM_1655 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D GEM_0330 alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GEM_4221 cytochrome c, class I K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5]
D GEM_4395 cytochrome c, class I K22474 adhB; alcohol dehydrogenase (quinone), cytochrome c subunit [EC:1.1.5.5]
D GEM_0806 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D GEM_1353 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D GEM_2916 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D GEM_2917 Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GEM_4800 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D GEM_5672 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_0125 Aldehyde Dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D GEM_4490 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D GEM_4565 CoA-binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D GEM_5807 L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D GEM_5340 thiamine pyrophosphate protein TPP binding domain protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D GEM_2703 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D GEM_2791 FAD linked oxidase domain protein K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4]
D GEM_5813 lactaldehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D GEM_0740 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D GEM_2167 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D GEM_0194 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D GEM_5453 chaperone protein HchA K05523 hchA; D-lactate dehydratase / protein deglycase [EC:4.2.1.130 3.5.1.124]
D GEM_0482 D-isomer specific 2-hydroxyacid dehydrogenase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D GEM_1682 Gluconate 2-dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D GEM_2415 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D GEM_0229 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D GEM_3390 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D GEM_2891 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D GEM_4822 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GEM_5392 malate--quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D GEM_1221 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D GEM_2430 fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D GEM_1005 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D GEM_4146 Phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D GEM_1438 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D GEM_5590 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D GEM_1389 Malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D GEM_4087 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4093 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0669 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1523 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1636 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4665 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0627 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D GEM_1151 Isopropylmalate/homocitrate/citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:bct00630]
D GEM_4139 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D GEM_1393 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D GEM_1224 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_2137 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_3469 putative AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_5590 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D GEM_1389 Malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D GEM_4822 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GEM_4968 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D GEM_0896 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D GEM_4815 Citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1]
D GEM_4826 Aconitate hydratase @ 2-methylisocitrate dehydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D GEM_4087 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4093 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0669 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1523 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1636 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4665 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0670 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D GEM_1637 acetyacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D GEM_5594 Glycolate dehydrogenase, subunit GlcD K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D GEM_2792 FAD linked oxidase domain protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D GEM_2793 GlcE protein K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D GEM_5593 glycolate oxidase FAD binding subunit K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D GEM_2794 protein of unknown function DUF224 cysteine-rich region domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D GEM_5592 glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D GEM_0002 Catalase domain protein K03781 katE; catalase [EC:1.11.1.6]
D GEM_4199 Catalase K03781 katE; catalase [EC:1.11.1.6]
D GEM_0482 D-isomer specific 2-hydroxyacid dehydrogenase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D GEM_1682 Gluconate 2-dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D GEM_2415 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D GEM_1718 glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D GEM_3600 hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D GEM_2406 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D GEM_2990 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D GEM_3563 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_1258 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_1279 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_0450 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_2727 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_3359 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_5265 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_0135 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D GEM_0137 glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D GEM_1923 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_1293 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_0136 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D GEM_1547 glyoxylate carboligase K01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47]
D GEM_1546 hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22]
D GEM_1545 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D GEM_1500 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D GEM_5813 lactaldehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D GEM_4195 tartrate dehydratase subunit alpha K03779 ttdA; L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32]
D GEM_4194 L(+)-tartrate dehydratase subunit beta K03780 ttdB; L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]
D GEM_5064 putative tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D GEM_5555 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D GEM_2860 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D GEM_2490 formate dehydrogenase subunit delta K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9]
D GEM_4778 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D GEM_4779 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D GEM_2489 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D GEM_2488 NADH dehydrogenase (quinone) K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D GEM_4777 formate dehydrogenase subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D GEM_2487 NADH-ubiquinone oxidoreductase 24 kD subunit-like protein K00127 fdoI; formate dehydrogenase subunit gamma
D GEM_4776 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
D GEM_1713 esterase/lipase-like protein K01432 AFMID; arylformamidase [EC:3.5.1.9]
D GEM_0853 cyclase family protein K07130 kynB; arylformamidase [EC:3.5.1.9]
D GEM_0660 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D GEM_3370 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D GEM_1256 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D GEM_4712 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D GEM_4702 N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:bct00640]
D GEM_1224 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_2137 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_3469 putative AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_5816 PrpE protein K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D GEM_4565 CoA-binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D GEM_2217 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D GEM_2216 transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D GEM_2215 catalytic domain of component of dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D GEM_1923 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_1293 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_5785 quinone oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D GEM_4724 quinone oxidoreductase 2 K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D GEM_2980 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D GEM_4690 NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D GEM_1353 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D GEM_2916 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D GEM_2917 Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GEM_4800 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D GEM_5847 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D GEM_4311 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D GEM_2591 methylmalonyl-CoA decarboxylase K11264 scpB; methylmalonyl-CoA decarboxylase [EC:4.1.1.-]
D GEM_0788 succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D GEM_0789 Succinyl-CoA ligase K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D GEM_4590 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_4310 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_1998 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_3470 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_5707 2-methylcitrate synthase/citrate synthase II K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D GEM_4825 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D GEM_5708 2-methylisocitrate dehydratase, Fe/S-dependent K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117]
D GEM_5709 methylitaconate delta2-delta3-isomerase K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-]
D GEM_5706 2-methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D GEM_1119 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
C 00650 Butanoate metabolism [PATH:bct00650]
D GEM_4087 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4093 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0669 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1523 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1636 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4665 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_3929 3-hydroxy-acyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D GEM_0555 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D GEM_1521 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D GEM_0721 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D GEM_4690 NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D GEM_2980 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D GEM_5745 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D GEM_5402 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D GEM_4110 acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D GEM_1635 Poly(3-hydroxyalkanoate) synthetase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D GEM_1082 putative depolymerase/histone-like protein K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D GEM_5032 polyhydroxybutyrate depolymerase K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D GEM_3607 PHB de-polymerase-like protein K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D GEM_0670 acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D GEM_1637 acetyacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D GEM_4081 Acyl CoA-acetate/3-ketoacid CoA transferase beta subunit K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12]
D GEM_5064 putative tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D GEM_5555 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D GEM_5631 Asp/Glu/hydantoin racemase K01799 nicE; maleate isomerase [EC:5.2.1.1]
D GEM_4818 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D GEM_4817 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D GEM_4820 putative succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D GEM_4819 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D GEM_5847 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D GEM_5846 Succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GEM_4220 aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GEM_4490 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D GEM_1716 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D GEM_0481 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D GEM_1963 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D GEM_1962 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D GEM_3544 acetoacetyl-coenzyme A synthetase AcsA K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D GEM_5549 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D GEM_1204 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D GEM_2689 hydroxybutyrate-dimer hydrolase K07518 E3.1.1.22; hydroxybutyrate-dimer hydrolase [EC:3.1.1.22]
D GEM_5548 acetoacetate decarboxylase K01574 adc; acetoacetate decarboxylase [EC:4.1.1.4]
D GEM_4983 thiamine pyrophosphate protein domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_0130 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_4556 thiamine pyrophosphate protein TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_1146 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_3771 thiamine pyrophosphate protein domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_1147 acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D GEM_3936 2,3-butanediol dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
D GEM_4104 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
D GEM_4144 short-chain dehydrogenase/reductase SDR K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
D GEM_3679 Short-chain dehydrogenase/reductase SDR K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:bct00660]
D GEM_4983 thiamine pyrophosphate protein domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_0130 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_4556 thiamine pyrophosphate protein TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_1146 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_3771 thiamine pyrophosphate protein domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_1147 acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D GEM_0788 succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D GEM_0789 Succinyl-CoA ligase K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D GEM_4810 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D GEM_4809 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D GEM_4808 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:bct00562]
D GEM_1344 inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D GEM_2347 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_0283 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_4286 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_0485 phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_3692 phosphatidylinositol diacylglycerol-lyase K01771 plc; 1-phosphatidylinositol phosphodiesterase [EC:4.6.1.13]
D GEM_2002 Inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D GEM_2001 xylose isomerase K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D GEM_2009 Xylose isomerase domain protein TIM barrel K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D GEM_2008 thiamine pyrophosphate protein central region K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D GEM_2010 Myo-inositol catabolism IolB domain protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D GEM_2007 Sugar kinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D GEM_4590 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_4310 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_1998 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_3470 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_1159 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:bct00190]
D GEM_1162 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D GEM_1163 NADH dehydrogenase beta subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D GEM_1164 NADH dehydrogenase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D GEM_1165 NADH dehydrogenase I, D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D GEM_1166 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D GEM_1167 NADH-quinone oxidoreductase, F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D GEM_1168 NADH-quinone oxidoreductase, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D GEM_1169 NADH dehydrogenase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D GEM_1170 NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D GEM_1171 NADH dehydrogenase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D GEM_1172 NADH dehydrogenase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D GEM_1173 NADH dehydrogenase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D GEM_1174 NADH dehydrogenase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D GEM_1358 proton-translocating NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D GEM_1175 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D GEM_5424 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D GEM_3722 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D GEM_4877 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D GEM_4818 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D GEM_4817 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D GEM_4820 putative succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D GEM_4819 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D GEM_3081 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D GEM_3080 cytochrome b/b6 domain-containing protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D GEM_3079 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D GEM_0602 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D GEM_0727 cytochrome C oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D GEM_1362 cytochrome C oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D GEM_0597 putative cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D GEM_0593 cytochrome-c oxidase K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D GEM_0592 cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D GEM_0595 cytochrome C oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D GEM_0601 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D GEM_0726 cytochrome c oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D GEM_1361 cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D GEM_0725 cytochrome-c oxidase K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D GEM_1360 cytochrome o ubiquinol oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D GEM_0724 ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D GEM_1359 cytochrome o ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D GEM_4957 ubiquinol oxidase subunit I, cyanide insensitive K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D GEM_0622 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D GEM_5727 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D GEM_4958 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D GEM_0621 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D GEM_5726 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D GEM_1691 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D GEM_0620 Cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D GEM_0965 class I cytochrome c K08738 CYC; cytochrome c
D GEM_0200 cytochrome c, class I K08738 CYC; cytochrome c
D GEM_0099 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D GEM_0101 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D GEM_0100 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D GEM_3606 ATP synthase F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D GEM_4899 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D GEM_0098 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D GEM_0102 AtpC protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D GEM_3605 ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D GEM_0095 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D GEM_0097 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D GEM_0096 ATP synthase C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D GEM_1013 Inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D GEM_2147 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D GEM_4436 putative polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:bct00710]
D GEM_0805 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D GEM_2884 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GEM_0807 fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GEM_2506 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GEM_2885 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D GEM_1881 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D GEM_1159 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D GEM_2989 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D GEM_1071 transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2]
D GEM_1005 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D GEM_0229 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D GEM_3390 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D GEM_2891 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D GEM_4822 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:bct00720]
D GEM_1438 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D GEM_1005 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D GEM_4822 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GEM_1221 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D GEM_2430 fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D GEM_4818 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D GEM_4817 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D GEM_4820 putative succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D GEM_4819 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D GEM_0789 Succinyl-CoA ligase K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D GEM_0788 succinyl-CoA synthetase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D GEM_4087 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4093 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0669 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1523 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1636 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4665 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0906 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GEM_0907 Isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GEM_4826 Aconitate hydratase @ 2-methylisocitrate dehydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D GEM_1353 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D GEM_2916 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D GEM_2917 Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GEM_4800 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D GEM_1288 Methylenetetrahydrofolate dehydrogenase (NADP+) / Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D GEM_0183 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D GEM_1224 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_2137 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_3469 putative AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:bct00680]
D GEM_3352 alcohol dehydrogenase GroES-like protein K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]
D GEM_0830 s-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D GEM_4778 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D GEM_4779 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D GEM_2489 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D GEM_2488 NADH dehydrogenase (quinone) K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D GEM_4777 formate dehydrogenase subunit beta K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D GEM_2487 NADH-ubiquinone oxidoreductase 24 kD subunit-like protein K00127 fdoI; formate dehydrogenase subunit gamma
D GEM_4776 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
D GEM_2490 formate dehydrogenase subunit delta K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9]
D GEM_2727 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_3359 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_5265 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_1718 glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D GEM_1321 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GEM_1005 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D GEM_4822 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GEM_0807 fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D GEM_2506 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GEM_3383 Amine dehydrogenase K15228 mauA; methylamine dehydrogenase light chain [EC:1.4.9.1]
D GEM_3380 amine dehydrogenase K15229 mauB; methylamine dehydrogenase heavy chain [EC:1.4.9.1]
D GEM_5082 quinohemoprotein amine dehydrogenase subunit alpha K08685 qhpA; quinohemoprotein amine dehydrogenase [EC:1.4.9.1]
D GEM_1224 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_2137 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_3469 putative AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_1438 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D GEM_0582 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D GEM_2838 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D GEM_0302 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GEM_3924 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GEM_2478 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D GEM_1644 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:bct00910]
D GEM_5359 nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D GEM_3951 major facilitator transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D GEM_5362 molybdopterin oxidoreductase family protein K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D GEM_5360 putative nitrite reductase K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4]
D GEM_5361 nitrite reductase K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4]
D GEM_3952 nitrite reductase (NAD(P)H), large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D GEM_3953 nitrite reductase (NAD(P)H) large subunit, NirD K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D GEM_3779 hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D GEM_3529 2-nitropropane dioxygenase, NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D GEM_0186 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D GEM_1659 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D GEM_5596 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D GEM_1709 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D GEM_0475 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D GEM_2822 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D GEM_3792 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D GEM_2853 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D GEM_3563 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_1258 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_1279 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_0450 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_3119 glutamate synthase (NADH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D GEM_3118 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D GEM_5319 Cyanate hydratase K01725 cynS; cyanate lyase [EC:4.2.1.104]
D GEM_5320 carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D GEM_1153 putative carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D GEM_0510 carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:bct00920]
D GEM_0494 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D GEM_1820 sulfate ABC transporter periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D GEM_1819 Sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D GEM_1818 sulfate ABC transporter permease K02047 cysW; sulfate/thiosulfate transport system permease protein
D GEM_1817 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D GEM_0550 taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D GEM_0552 Binding-protein-dependent transport systems inner membrane component K15552 tauC; taurine transport system permease protein
D GEM_0551 ABC transporter-like protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D GEM_1886 aliphatic sulfonates ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4624 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_3806 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4370 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4616 nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4600 nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4163 ABC transporter K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_0021 putative transport protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4366 NMT1/THI5-like domain-containing protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_5152 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_1866 binding-protein-dependent transport system inner membrane protein K15554 ssuC; sulfonate transport system permease protein
D GEM_4617 binding-protein-dependent transport system inner membrane protein K15554 ssuC; sulfonate transport system permease protein
D GEM_4618 nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein K15554 ssuC; sulfonate transport system permease protein
D GEM_4367 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D GEM_0019 binding-protein-dependent transport system inner membrane protein K15554 ssuC; sulfonate transport system permease protein
D GEM_4619 nitrate/sulfonate/bicarbonate ABC transporter ATPase K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D GEM_1865 ABC transporter-like protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D GEM_4368 ABC transporter-like protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D GEM_0020 nitrate/sulfonate/bicarbonate ABC transporter ATPase K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D GEM_4164 alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D GEM_4364 Alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D GEM_1867 alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D GEM_3274 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D GEM_1235 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D GEM_0957 translation elongation factor Tu K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D GEM_0956 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GEM_1236 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GEM_0955 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D GEM_4760 sulfite oxidase K17225 soxC; sulfane dehydrogenase subunit SoxC
D GEM_4759 cytochrome C region protein K22622 soxD; S-disulfanyl-L-cysteine oxidoreductase SoxD [EC:1.8.2.6]
D GEM_3954 sulfite reductase (NADPH) alpha subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D GEM_0953 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like protein K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D GEM_3972 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D GEM_1667 hypothetical protein K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D GEM_4875 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D GEM_5533 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D GEM_5198 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D GEM_1346 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D GEM_1695 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D GEM_0335 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D GEM_4795 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D GEM_0857 selenium-binding protein K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4]
D GEM_5812 Methanesulfonate monooxygenase, hydroxylase alpha subunit K16968 msmA; methanesulfonate monooxygenase subunit alpha [EC:1.14.13.111]
D GEM_5811 methanesulfonate monooxygenase, hydroxylase subunit beta K16969 msmB; methanesulfonate monooxygenase subunit beta [EC:1.14.13.111]
D GEM_5810 methanesulfonate monooxygenase component K15765 tmoF; toluene monooxygenase electron transfer component [EC:1.18.1.3]
D GEM_1520 AMP-dependent synthetase and ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D GEM_4329 acyl-CoA synthetase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D GEM_3420 medium-chain-fatty-acid--CoA ligase AlkK K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D GEM_0720 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:bct00061]
D GEM_1353 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D GEM_2916 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D GEM_2917 Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D GEM_4800 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D GEM_0682 acyl carrier protein K02078 acpP; acyl carrier protein
D GEM_2395 acyl carrier protein K02078 acpP; acyl carrier protein
D GEM_2397 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GEM_2180 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GEM_2398 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D GEM_0675 3-oxoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D GEM_2394 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D GEM_4091 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_1011 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_0683 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_2396 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_3660 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_1118 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_2012 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_4103 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_5772 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_4971 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_1432 (3R)-hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D GEM_5745 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D GEM_1899 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_2236 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_2971 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_0871 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_5357 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:bct00071]
D GEM_4087 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4093 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0669 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1523 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1636 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4665 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0722 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D GEM_4690 NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D GEM_2980 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D GEM_0555 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D GEM_1521 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D GEM_0721 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D GEM_4407 Acyl-CoA dehydrogenase type 2 K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GEM_1747 acyl-CoA dehydrogenase domain-containing protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GEM_5443 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GEM_4564 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GEM_4689 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GEM_4686 acyl-CoA dehydrogenase-like protein K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]
D GEM_2715 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D GEM_1899 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_2236 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_2971 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_0871 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_5357 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_2548 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3]
D GEM_3775 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D GEM_4746 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D GEM_1655 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis [PATH:bct00100]
D GEM_4358 Squalene/phytoene synthase K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:bct00561]
D GEM_1500 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_0330 alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D GEM_0759 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D GEM_2399 glycerol-3-phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D GEM_0873 putative glycerol-3-phosphate acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D GEM_2657 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GEM_0742 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GEM_1139 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D GEM_4838 cholesterol esterase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D GEM_2462 alpha/beta hydrolase fold protein K01054 MGLL; acylglycerol lipase [EC:3.1.1.23]
D GEM_1140 glycosyl transferase group 1 K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-]
C 00564 Glycerophospholipid metabolism [PATH:bct00564]
D GEM_0586 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D GEM_0760 glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D GEM_4933 Fe-S oxidoreductase-like protein K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D GEM_0873 putative glycerol-3-phosphate acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D GEM_2657 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GEM_0742 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GEM_1139 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D GEM_2347 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_0283 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_4286 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_0485 phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_3122 Glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D GEM_0122 Ethanolamine ammonia lyase large subunit K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7]
D GEM_0123 ethanolamine ammonia-lyase small subunit K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7]
D GEM_5332 phospholipid N-methyltransferase-like protein K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
D GEM_1426 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D GEM_2057 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D GEM_1150 putative phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D GEM_1149 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D GEM_4736 Psd protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D GEM_2375 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D GEM_2893 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D GEM_1229 HAD family hydrolase K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D GEM_1407 Cls protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D GEM_0718 putative phospholipase D K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D GEM_4862 phospholipase D/Transphosphatidylase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
D GEM_0692 phospholipase D/transphosphatidylase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
C 00565 Ether lipid metabolism
D GEM_2347 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_0283 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_4286 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_0485 phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism
D GEM_2343 glycosyl transferase family protein K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D GEM_3291 Acyl-CoA dehydrogenase-like protein K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:bct00592]
D GEM_0722 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:bct01040]
D GEM_0923 stearoyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D GEM_1508 Lysophospholipase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D GEM_0731 thioesterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:bct00230]
D GEM_1177 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D GEM_2630 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GEM_0637 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D GEM_4796 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D GEM_1115 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D GEM_0920 PurN protein K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D GEM_1087 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D GEM_1513 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D GEM_2764 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D GEM_0810 Phosphoribosylaminoimidazole Carboxylase, Atpase Subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D GEM_0809 phosphoribosylaminoimidazole carboxylase catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D GEM_0808 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D GEM_2855 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D GEM_2832 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D GEM_0657 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D GEM_5369 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D GEM_1603 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D GEM_3912 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D GEM_1634 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D GEM_2930 hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D GEM_1449 inosine 5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D GEM_1611 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D GEM_2531 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D GEM_2697 FAD-binding molybdopterin dehydrogenase K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4]
D GEM_2696 xanthine dehydrogenase, molybdenum binding subunit apoprotein / xanthine oxidase K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4]
D GEM_4182 (2Fe-2S)-binding domain protein K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit
D GEM_0066 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D GEM_1451 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D GEM_2252 putative amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D GEM_2502 guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D GEM_2528 Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D GEM_2925 Ribonucleotide reductase of class Ia (aerobic),alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GEM_2924 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D GEM_3127 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D GEM_2526 (p)ppGpp synthetase I SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D GEM_2146 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D GEM_1959 GTP pyrophosphokinase ppGpp synthetase I K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D GEM_1625 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D GEM_2921 PfkB domain protein K00856 ADK; adenosine kinase [EC:2.7.1.20]
D GEM_4883 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D GEM_2501 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D GEM_0535 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D GEM_0882 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D GEM_2260 metallophosphoesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D GEM_2656 bis(5'-nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D GEM_1235 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D GEM_0957 translation elongation factor Tu K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D GEM_0956 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GEM_1236 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GEM_1467 hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D GEM_2601 putative transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D GEM_2602 transthyretin family protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D GEM_2605 Pucl protein K13485 PRHOXNB; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]
D GEM_1462 urate oxidase K13485 PRHOXNB; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]
D GEM_1460 Asp/Glu/hydantoin racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3]
D GEM_4595 putative Asp/Glu/Hydantoin racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3]
D GEM_1461 urate catabolism protein K16842 hpxB; allantoinase [EC:3.5.2.5]
D GEM_1463 allantoicase K01477 alc; allantoicase [EC:3.5.3.4]
D GEM_2874 allantoicase K01477 alc; allantoicase [EC:3.5.3.4]
D GEM_5758 allantoin catabolism protein K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26]
D GEM_1464 Ureidoglycolate hydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3]
D GEM_2873 Ureidoglycolate hydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3]
D GEM_5701 5-carboxymethyl-2-hydroxymuconate Delta-isomerase K16856 ugl; ureidoglycolate lyase [EC:4.3.2.3]
D GEM_2623 UreC protein K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D GEM_2622 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D GEM_2621 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:bct00240]
D GEM_2162 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D GEM_2164 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D GEM_2659 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D GEM_3654 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D GEM_2658 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D GEM_2847 dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D GEM_1876 Dihydroorotate oxidase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D GEM_0228 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D GEM_2896 PyrF protein K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D GEM_1423 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D GEM_1611 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D GEM_1110 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D GEM_1319 CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D GEM_2474 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D GEM_5369 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D GEM_1603 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D GEM_3912 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D GEM_1117 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D GEM_2660 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D GEM_0535 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D GEM_4291 N-isopropylammelide isopropylaminohydrolase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D GEM_0998 Dcd protein K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D GEM_2925 Ribonucleotide reductase of class Ia (aerobic),alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GEM_2924 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D GEM_1532 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D GEM_0915 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D GEM_2435 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D GEM_5632 phenylhydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D GEM_5374 N-carbamyl-L-amino acid amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D GEM_4519 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D GEM_2202 Beta-ureidopropionase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D GEM_2728 short-chain dehydrogenase/reductase SDR K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D GEM_3758 hypothetical protein K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:bct00250]
D GEM_0926 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D GEM_4526 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D GEM_2251 aspartate racemase protein K01779 racD; aspartate racemase [EC:5.1.1.13]
D GEM_1543 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D GEM_4455 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D GEM_3618 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D GEM_1569 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D GEM_4399 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D GEM_4572 AspA protein K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D GEM_5060 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D GEM_1002 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D GEM_1625 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D GEM_2855 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D GEM_2659 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D GEM_3654 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D GEM_5847 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D GEM_5846 Succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GEM_4220 aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GEM_3119 glutamate synthase (NADH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D GEM_3118 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D GEM_3792 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D GEM_2853 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D GEM_4708 1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D GEM_0108 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D GEM_4704 bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D GEM_3563 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_1258 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_1279 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_0450 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_2162 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D GEM_2164 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D GEM_3501 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D GEM_0617 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_4516 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_5016 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_5238 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_0459 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_4796 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:bct00260]
D GEM_1355 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GEM_4807 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GEM_1570 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D GEM_4885 homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D GEM_1571 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D GEM_5728 Threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D GEM_2727 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_3359 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_5265 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_1718 glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D GEM_0482 D-isomer specific 2-hydroxyacid dehydrogenase K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D GEM_1682 Gluconate 2-dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D GEM_2415 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D GEM_1500 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D GEM_0582 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D GEM_2838 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D GEM_0302 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GEM_3924 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GEM_2478 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D GEM_1644 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D GEM_2728 short-chain dehydrogenase/reductase SDR K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D GEM_5561 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D GEM_5560 L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D GEM_5461 Amine oxidase (flavin-containing) K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GEM_5472 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GEM_0135 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D GEM_0137 glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D GEM_1923 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_1293 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_0136 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D GEM_1150 putative phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D GEM_4718 choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D GEM_3342 choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D GEM_3343 betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D GEM_5303 betaine-aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D GEM_3366 Rieske (2Fe-2S) domain protein K00479 gbcA; glycine betaine monooxygenase A [EC:1.14.13.251]
D GEM_3367 oxidoreductase FAD-binding subunit K21832 gbcB; glycine betaine monooxygenase B [EC:1.14.13.251]
D GEM_3362 NADH:flavin oxidoreductase K21833 dgcA; N,N-dimethylglycine/sarcosine dehydrogenase [EC:1.5.7.3]
D GEM_3363 protein of unknown function DUF224 cysteine-rich region domain protein K21834 dgcB; N,N-dimethylglycine/sarcosine dehydrogenase ferredoxin subunit
D GEM_3364 putative electron transfer flavoprotein subunit alpha K25960 etfA; N,N-dimethylglycine/sarcosine catabolism electron transfer flavoprotein subunit alpha
D GEM_3365 electron transfer flavoprotein subunit beta K25961 etfB; N,N-dimethylglycine/sarcosine catabolism electron transfer flavoprotein subunit beta
D GEM_3304 putative sarcosine oxidase subunit alpha K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1]
D GEM_3302 sarcosine oxidase subunit beta K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1]
D GEM_3305 Sarcosine oxidase gamma subunit K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1]
D GEM_3303 Sarcosine oxidase delta subunit K00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1]
D GEM_0133 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D GEM_3301 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D GEM_1478 phenylserine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D GEM_4188 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D GEM_0705 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D GEM_2198 Pyridoxal-5'-phosphate-dependent protein beta subunit K17989 SDS; L-serine/L-threonine ammonia-lyase [EC:4.3.1.17 4.3.1.19]
D GEM_0700 amino acid aldolase or racemase-like protein K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D GEM_3486 D-serine dehydratase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D GEM_1285 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D GEM_4801 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D GEM_4803 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:bct00270]
D GEM_5533 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D GEM_5198 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D GEM_1346 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D GEM_1695 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D GEM_3592 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GEM_1643 Cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GEM_4752 aminotransferase, class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GEM_5803 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GEM_0520 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GEM_0521 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GEM_3194 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D GEM_0360 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D GEM_3574 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D GEM_3569 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D GEM_2886 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D GEM_3749 autoinducer synthesis protein K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184]
D GEM_1987 Adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D GEM_1634 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D GEM_1205 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_1265 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_4282 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_2363 putative GAF sensor protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D GEM_0181 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D GEM_5346 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]
D GEM_1355 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GEM_4807 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GEM_1570 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D GEM_0335 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D GEM_5073 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D GEM_4795 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D GEM_0802 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GEM_0575 glutamate--cysteine ligase GshA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D GEM_0279 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D GEM_4875 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D GEM_1285 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D GEM_4822 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D GEM_0133 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D GEM_3301 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D GEM_2198 Pyridoxal-5'-phosphate-dependent protein beta subunit K17989 SDS; L-serine/L-threonine ammonia-lyase [EC:4.3.1.17 4.3.1.19]
D GEM_2465 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D GEM_0302 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GEM_3924 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GEM_2478 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:bct00280]
D GEM_0802 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GEM_2217 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D GEM_2216 transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D GEM_2215 catalytic domain of component of dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D GEM_1923 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_1293 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_4407 Acyl-CoA dehydrogenase type 2 K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GEM_1747 acyl-CoA dehydrogenase domain-containing protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GEM_5443 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GEM_4564 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GEM_4689 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D GEM_3256 acyl-CoA dehydrogenase domain protein K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D GEM_2980 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D GEM_4690 NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D GEM_0722 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D GEM_3471 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D GEM_4591 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D GEM_4590 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_4310 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_1998 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_3470 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4311 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D GEM_3259 Acetyl/propionyl-CoA carboxylase, alpha subunit K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D GEM_3257 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D GEM_3258 enoyl-CoA hydratase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D GEM_3931 Enoyl-CoA hydratase/isomerase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D GEM_1716 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D GEM_0481 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D GEM_1963 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D GEM_1962 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D GEM_3544 acetoacetyl-coenzyme A synthetase AcsA K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D GEM_4087 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4093 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0669 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1523 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1636 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4665 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:bct00290]
D GEM_1478 phenylserine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D GEM_4188 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D GEM_0705 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D GEM_2198 Pyridoxal-5'-phosphate-dependent protein beta subunit K17989 SDS; L-serine/L-threonine ammonia-lyase [EC:4.3.1.17 4.3.1.19]
D GEM_4810 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D GEM_4809 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D GEM_4808 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D GEM_4983 thiamine pyrophosphate protein domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_0130 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_4556 thiamine pyrophosphate protein TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_1146 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_3771 thiamine pyrophosphate protein domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_1147 acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D GEM_1148 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D GEM_0966 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D GEM_4481 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D GEM_0802 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GEM_1569 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D GEM_0627 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D GEM_1151 Isopropylmalate/homocitrate/citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:bct00300]
D GEM_1570 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D GEM_1355 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GEM_4807 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GEM_1968 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D GEM_1333 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D GEM_0493 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D GEM_2870 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D GEM_3661 hypothetical protein K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D GEM_1411 DapD protein K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D GEM_0939 ArgD protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D GEM_1412 succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D GEM_1409 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D GEM_0357 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D GEM_3596 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D GEM_1057 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D GEM_5209 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D GEM_2964 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D GEM_2963 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:bct00310]
D GEM_3210 aldehyde dehydrogenase K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D GEM_1924 dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GEM_1923 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_1293 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2715 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D GEM_2980 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D GEM_4690 NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D GEM_4087 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4093 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0669 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1523 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1636 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4665 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1285 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D GEM_5846 Succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GEM_4220 aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GEM_2022 L-carnitine dehydratase/bile acid-inducible protein F K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-]
D GEM_0544 class IV aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D GEM_5641 FAD dependent oxidoreductase K26064 amaD; D-lysine oxidase
D GEM_3413 FAD dependent oxidoreductase K26064 amaD; D-lysine oxidase
D GEM_2681 FAD dependent oxidoreductase K26064 amaD; D-lysine oxidase
D GEM_4480 Malate/L-lactate dehydrogenase K13609 dpkA; delta1-piperideine-2-carboxylate reductase [EC:1.5.1.21]
D GEM_4275 ornithine cyclodeaminase K19743 lhpI; 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] [EC:1.5.1.1]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_3400 gamma-butyrobetaine,2-oxoglutarate dioxygenase K00471 BBOX1; gamma-butyrobetaine dioxygenase [EC:1.14.11.1]
D GEM_4721 putative gamma-butyrobetaine dioxygenase K00471 BBOX1; gamma-butyrobetaine dioxygenase [EC:1.14.11.1]
C 00220 Arginine biosynthesis [PATH:bct00220]
D GEM_0876 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D GEM_5060 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D GEM_1002 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D GEM_2623 UreC protein K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D GEM_2622 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D GEM_2621 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D GEM_3501 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D GEM_3563 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_1258 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_1279 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_0450 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_2162 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D GEM_2164 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D GEM_3792 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D GEM_2853 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D GEM_1569 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D GEM_3497 N-acetyltransferase GCN5 K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D GEM_1272 N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D GEM_2949 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D GEM_0345 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D GEM_5553 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D GEM_0225 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D GEM_0939 ArgD protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D GEM_1479 acetylornithine deacetylase (ArgE) K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:bct00330]
D GEM_4291 N-isopropylammelide isopropylaminohydrolase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D GEM_3540 5-oxoprolinase (ATP-hydrolyzing) K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D GEM_3527 Lysine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D GEM_0999 lysine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D GEM_3804 agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D GEM_2209 agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D GEM_1801 peptidyl-arginine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D GEM_1804 peptidyl-arginine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D GEM_1800 peptidyl-arginine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D GEM_1803 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D GEM_3569 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D GEM_2886 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D GEM_3574 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D GEM_0449 putative aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D GEM_1259 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D GEM_3683 hypothetical protein K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_0272 GCN5-related N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D GEM_5461 Amine oxidase (flavin-containing) K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GEM_5472 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GEM_4550 aminotransferase class I and II K12252 aruH; arginine:pyruvate transaminase [EC:2.6.1.84]
D GEM_3196 agmatinase K12255 gbuA; guanidinobutyrase [EC:3.5.3.7]
D GEM_5302 agmatinase K12255 gbuA; guanidinobutyrase [EC:3.5.3.7]
D GEM_0184 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GEM_3786 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GEM_2332 putative arginine N-succinyltransferase subunit beta K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D GEM_2333 putative arginine N-succinyltransferase subunit alpha K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D GEM_2330 succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D GEM_2334 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D GEM_2331 succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D GEM_2329 succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D GEM_0442 putative oxidoreductase in putrescine utilization cluster K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D GEM_3208 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D GEM_3561 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D GEM_5456 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D GEM_2856 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D GEM_0453 aldehyde dehydrogenase K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99]
D GEM_4569 Aldehyde Dehydrogenase K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99]
D GEM_2797 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D GEM_4654 NADP oxidoreductase coenzyme f420-dependent K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D GEM_4695 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D GEM_0108 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D GEM_4704 bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D GEM_5158 ornithine cyclodeaminase K01750 E4.3.1.12; ornithine cyclodeaminase [EC:4.3.1.12]
D GEM_4708 1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D GEM_2935 gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D GEM_2864 ProA protein K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D GEM_4501 prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D GEM_0544 class IV aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D GEM_4657 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D GEM_4714 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D GEM_4272 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D GEM_4275 ornithine cyclodeaminase K19743 lhpI; 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] [EC:1.5.1.1]
C 00340 Histidine metabolism [PATH:bct00340]
D GEM_3098 ATP phosphoribosyltransferase catalytic subunit K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D GEM_1624 ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D GEM_3089 HisE protein K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D GEM_3090 Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D GEM_3092 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D GEM_3093 imidazole glycerol phosphate synthase glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D GEM_3091 imidazole glycerol phosphate synthase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D GEM_3095 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D GEM_0634 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GEM_3096 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GEM_3097 Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D GEM_1250 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D GEM_1252 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D GEM_1254 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D GEM_1255 formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D GEM_1256 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D GEM_4712 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D GEM_4702 N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5461 Amine oxidase (flavin-containing) K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GEM_5472 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GEM_0010 hypothetical protein K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44]
C 00350 Tyrosine metabolism [PATH:bct00350]
D GEM_0634 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GEM_3096 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GEM_1205 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_1265 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_4282 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_0232 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GEM_4236 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GEM_2708 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D GEM_4470 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D GEM_0629 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D GEM_2707 fumarylacetoacetate hydrolase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D GEM_0525 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D GEM_5461 Amine oxidase (flavin-containing) K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GEM_5472 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GEM_3682 Betaine-aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D GEM_5541 Aldehyde Dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D GEM_5083 NAD-dependent aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D GEM_4746 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D GEM_1655 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D GEM_5625 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9]
D GEM_4386 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15]
D GEM_4387 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
D GEM_4385 5-carboxymethyl-2-hydroxymuconate delta-isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D GEM_4388 5-carboxymethyl-2-hydroxymuconate delta-isomerase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D GEM_4389 5-carboxymethyl-2-hydroxymuconate delta-isomerase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D GEM_4384 4-oxalocrotonate decarboxylase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
D GEM_4383 2-dehydro-3-deoxyglucarate aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D GEM_5846 Succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GEM_4220 aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GEM_4472 gentisate 1,2-dioxygenase K00450 E1.13.11.4; gentisate 1,2-dioxygenase [EC:1.13.11.4]
D GEM_4471 fumarylacetoacetate (FAA) hydrolase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
D GEM_3945 fumarylacetoacetate (FAA) hydrolase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
D GEM_3531 hypothetical protein K13574 hcxB; hydroxycarboxylate dehydrogenase B [EC:1.1.1.237 1.1.1.-]
C 00360 Phenylalanine metabolism [PATH:bct00360]
D GEM_0073 phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D GEM_5461 Amine oxidase (flavin-containing) K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GEM_5472 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GEM_3682 Betaine-aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D GEM_5541 Aldehyde Dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D GEM_5083 NAD-dependent aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D GEM_2985 phenylacetate-CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D GEM_3930 phenylacetate-CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D GEM_3706 Phenylacetate-CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D GEM_2984 phenylacetic acid degradation protein PaaD K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-]
D GEM_0241 phenylacetate-CoA oxygenase, PaaG subunit K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
D GEM_0240 phenylacetate-CoA oxygenase subunit PaaB K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
D GEM_0239 phenylacetate-CoA oxygenase subunit PaaI K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
D GEM_0238 phenylacetate-CoA oxygenase, PaaJ subunit K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
D GEM_0237 Ferredoxin K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
D GEM_4563 enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D GEM_4674 putative enoyl-CoA hydratase/isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D GEM_2983 phenylacetate degradation, enoyl-CoA hydratase paaB K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D GEM_2980 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D GEM_3929 3-hydroxy-acyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D GEM_0634 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GEM_3096 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GEM_1205 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_1265 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_4282 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_5686 GCN5-related N-acetyltransferase K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-]
D GEM_0232 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GEM_4236 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GEM_2456 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D GEM_0544 class IV aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D GEM_3531 hypothetical protein K13574 hcxB; hydroxycarboxylate dehydrogenase B [EC:1.1.1.237 1.1.1.-]
D GEM_2800 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D GEM_0184 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GEM_3786 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GEM_3763 Rieske (2Fe-2S) domain protein K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
D GEM_3775 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D GEM_2711 FAD-dependent oxidoreductase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
D GEM_2509 FAD-dependent oxidoreductase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
C 00380 Tryptophan metabolism [PATH:bct00380]
D GEM_0851 tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11]
D GEM_1713 esterase/lipase-like protein K01432 AFMID; arylformamidase [EC:3.5.1.9]
D GEM_0853 cyclase family protein K07130 kynB; arylformamidase [EC:3.5.1.9]
D GEM_0852 kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3]
D GEM_5404 betaine-aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85]
D GEM_1924 dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GEM_1923 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_1293 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2715 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D GEM_2980 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D GEM_4690 NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D GEM_4087 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4093 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0669 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1523 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1636 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4665 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_5461 Amine oxidase (flavin-containing) K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GEM_5472 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_2822 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D GEM_0184 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GEM_3786 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GEM_0002 Catalase domain protein K03781 katE; catalase [EC:1.11.1.6]
D GEM_4199 Catalase K03781 katE; catalase [EC:1.11.1.6]
D GEM_2800 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:bct00400]
D GEM_2786 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D GEM_5656 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D GEM_3128 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D GEM_5893 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D GEM_4647 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D GEM_2915 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D GEM_5892 4-hydroxyphenylpyruvate dioxygenase K26400 quiC1; 3-dehydroshikimate dehydratase [EC:4.2.1.118]
D GEM_5894 shikimate 5-dehydrogenase K25901 qsuD; quinate/shikimate dehydrogenase (NAD+) [EC:1.1.1.24]
D GEM_2909 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D GEM_4646 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D GEM_3129 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D GEM_2475 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D GEM_1972 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D GEM_2991 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D GEM_2992 anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D GEM_2993 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D GEM_4804 N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D GEM_2994 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D GEM_4801 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D GEM_4803 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D GEM_2517 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D GEM_2477 Chorismate mutase I / Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D GEM_2476 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D GEM_0105 arogenate dehydratase K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91]
D GEM_0634 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GEM_3096 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GEM_1205 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_1265 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_4282 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_0073 phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D GEM_0684 endoribonuclease L-PSP K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:bct00410]
D GEM_0987 aspartate alpha-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D GEM_5847 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_0988 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D GEM_5632 phenylhydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D GEM_5374 N-carbamyl-L-amino acid amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D GEM_4519 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D GEM_2202 Beta-ureidopropionase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D GEM_4311 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D GEM_2980 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D GEM_4690 NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D GEM_4590 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_4310 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_1998 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D GEM_3470 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:bct00430]
D GEM_4437 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_3719 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_0553 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_0764 putative gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_4399 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D GEM_3792 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
C 00440 Phosphonate and phosphinate metabolism [PATH:bct00440]
D GEM_4495 2,3-dimethylmalate lyase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9]
D GEM_4496 thiamine pyrophosphate binding domain-containing protein K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82]
D GEM_0290 phosphonoacetate hydrolase K19670 phnA; phosphonoacetate hydrolase [EC:3.11.1.2]
D GEM_5901 phosphonoacetate hydrolase K19670 phnA; phosphonoacetate hydrolase [EC:3.11.1.2]
D GEM_5902 aldehyde dehydrogenase K00206 phnY; phosphonoacetaldehyde dehydrogenase [EC:1.2.1.-]
D GEM_0291 phosphonoacetaldehyde dehydrogenase K00206 phnY; phosphonoacetaldehyde dehydrogenase [EC:1.2.1.-]
D GEM_5896 2-aminoethylphosphonate:pyruvate aminotransferase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D GEM_4497 aminotransferase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D GEM_0286 2-aminoethylphosphonate--pyruvate transaminase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
C 00450 Selenocompound metabolism [PATH:bct00450]
D GEM_3592 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GEM_1643 Cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GEM_4752 aminotransferase, class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GEM_5803 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GEM_0520 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GEM_0521 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GEM_3194 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D GEM_5195 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D GEM_2557 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D GEM_1235 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D GEM_0957 translation elongation factor Tu K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D GEM_0956 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GEM_1236 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GEM_5850 selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D GEM_4774 selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D GEM_0994 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:bct00460]
D GEM_4672 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D GEM_2822 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D GEM_4437 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_3719 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_0553 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_0764 putative gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_1543 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D GEM_4455 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D GEM_2727 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_3359 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_5265 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:bct00470]
D GEM_1402 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D GEM_4542 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D GEM_0544 class IV aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D GEM_2957 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D GEM_1285 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D GEM_3501 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D GEM_1219 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D GEM_1262 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D GEM_2961 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D GEM_4526 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D GEM_2251 aspartate racemase protein K01779 racD; aspartate racemase [EC:5.1.1.13]
D GEM_0700 amino acid aldolase or racemase-like protein K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D GEM_3486 D-serine dehydratase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D GEM_0357 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D GEM_3596 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D GEM_2683 ornithine cyclodeaminase/mu-crystallin K19744 dauB; L-arginine dehydrogenase [EC:1.4.1.25]
D GEM_4657 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D GEM_4714 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D GEM_4272 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D GEM_4477 hydroxyproline-2-epimerase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8]
D GEM_4474 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K22549 lhpC; D-hydroxyproline dehydrogenase subunit alpha [EC:1.5.99.-]
D GEM_4476 FAD dependent oxidoreductase K21061 lhpB; D-hydroxyproline dehydrogenase subunit beta [EC:1.5.99.-]
D GEM_4475 ferredoxin K22550 lhpD; D-hydroxyproline dehydrogenase subunit gamma
D GEM_3980 NADP-dependent fatty aldehyde dehydrogenase AldH K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D GEM_4479 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D GEM_5879 2,5-dioxopentanoate dehydrogenase (NAD+) K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D GEM_2456 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:bct00480]
D GEM_4437 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_3719 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_0553 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_0764 putative gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_5817 AIG2 family protein K00682 GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]
D GEM_0750 ChaC family protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7]
D GEM_5183 5-oxoprolinase K01469 OPLAH; 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]
D GEM_0403 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D GEM_0405 Allophanate hydrolase subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D GEM_0404 allophanate hydrolase 2 subunit 2 K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D GEM_0064 carboxylate-amine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D GEM_0575 glutamate--cysteine ligase GshA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D GEM_0279 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D GEM_0962 PepA protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D GEM_2505 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D GEM_3030 peptidase M1 membrane alanine aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D GEM_5287 glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_4906 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_2827 glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5092 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5168 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5604 glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_1185 glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5248 glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_4811 putative glutathione-S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5732 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5751 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_0496 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_3997 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_0410 glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5031 glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5011 glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_0441 NADPH-glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D GEM_0906 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GEM_0907 Isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D GEM_4846 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D GEM_2564 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D GEM_5781 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D GEM_1406 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D GEM_2953 redoxin domain-containing protein K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D GEM_3569 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D GEM_2886 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
D GEM_4410 Beta-mannosidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
C 00540 Lipopolysaccharide biosynthesis [PATH:bct00540]
D GEM_1433 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D GEM_2742 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D GEM_2952 UDP-3-O-3-(hydroxymyristoyl) N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D GEM_1431 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D GEM_1347 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D GEM_1434 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D GEM_0885 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D GEM_0655 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D GEM_1320 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D GEM_0654 putative 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D GEM_0883 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D GEM_2627 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D GEM_0359 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D GEM_0625 signal peptide protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D GEM_0198 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D GEM_2647 cytidyltransferase-related domain protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D GEM_2468 rfaE bifunctional protein K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D GEM_0743 Histidinol phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D GEM_0530 rfaE bifunctional protein K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D GEM_2467 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D GEM_2540 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D GEM_2629 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D GEM_0800 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D GEM_1095 glycosyl transferase family 9 K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D GEM_1096 O-antigen polymerase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:bct00541]
D GEM_1990 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GEM_4786 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D GEM_2634 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D GEM_3825 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D GEM_4928 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GEM_2469 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D GEM_2654 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D GEM_2655 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D GEM_2653 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D GEM_2652 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D GEM_0940 oxidoreductase FAD/NAD(P)-binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D GEM_4413 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D GEM_4930 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D GEM_2651 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D GEM_4793 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D GEM_2645 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D GEM_4794 NAD-dependent epimerase/dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
D GEM_2644 NAD-dependent epimerase/dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
D GEM_0460 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D GEM_2754 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D GEM_5019 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D GEM_2753 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 00550 Peptidoglycan biosynthesis [PATH:bct00550]
D GEM_4238 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D GEM_3099 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D GEM_0875 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D GEM_2958 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D GEM_2961 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D GEM_2964 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D GEM_2957 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D GEM_2963 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D GEM_1425 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D GEM_2134 UppP protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GEM_2607 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GEM_5547 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GEM_2962 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D GEM_2959 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D GEM_2908 MtgA protein K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D GEM_3134 1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_1476 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_3221 Peptidoglycan glycosyltransferase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_4271 Peptidoglycan glycosyltransferase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_5759 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_3902 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D GEM_0322 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D GEM_2965 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GEM_4393 peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GEM_0543 penicillin-binding protein 6 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D GEM_0814 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:bct00552]
D GEM_2134 UppP protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GEM_2607 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GEM_5547 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:bct00543]
D GEM_4514 N-glycosyltransferase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D GEM_5533 Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D GEM_5198 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D GEM_1346 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:bct00730]
D GEM_2268 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D GEM_2665 Phosphomethylpyrimidine kinase type-1 K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D GEM_1400 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D GEM_5260 class V aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GEM_1302 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GEM_3112 FAD dependent oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D GEM_4871 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D GEM_3110 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D GEM_3109 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D GEM_4903 thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D GEM_2892 thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D GEM_2444 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D GEM_5330 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GEM_5331 putative alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GEM_0882 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:bct00740]
D GEM_3746 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D GEM_4232 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D GEM_2573 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D GEM_2570 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D GEM_5167 HAD family hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D GEM_0755 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D GEM_2574 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D GEM_4972 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D GEM_2571 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D GEM_0919 bifunctional riboflavin kinase/FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D GEM_3274 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D GEM_2704 cob(II)yrinic acid a,c-diamide reductase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79]
D GEM_1177 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D GEM_3018 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:bct00750]
D GEM_0861 pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D GEM_5207 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D GEM_2346 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D GEM_2478 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D GEM_5479 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D GEM_0737 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D GEM_2382 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D GEM_1571 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:bct00760]
D GEM_0926 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D GEM_3772 L-aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21]
D GEM_0924 quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D GEM_0925 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D GEM_2418 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D GEM_5369 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D GEM_1603 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D GEM_3577 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase K13522 K13522; bifunctional NMN adenylyltransferase/nudix hydrolase [EC:2.7.7.1 3.6.1.-]
D GEM_1113 nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D GEM_3202 NAD synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D GEM_1016 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D GEM_2894 CinA-like protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D GEM_1522 nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D GEM_3578 nicotinate phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
D GEM_2780 NAD(+)/NADH kinase family protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D GEM_5631 Asp/Glu/hydantoin racemase K01799 nicE; maleate isomerase [EC:5.2.1.1]
D GEM_5846 Succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D GEM_4220 aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:bct00770]
D GEM_4983 thiamine pyrophosphate protein domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_0130 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_4556 thiamine pyrophosphate protein TPP binding domain protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_1146 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_3771 thiamine pyrophosphate protein domain protein TPP-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D GEM_1147 acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D GEM_1148 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D GEM_0966 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D GEM_4481 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D GEM_2770 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D GEM_5236 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D GEM_1498 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D GEM_3646 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D GEM_4642 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D GEM_0849 putative ketopantoate reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D GEM_0891 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D GEM_0988 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D GEM_0532 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D GEM_0916 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D GEM_0632 phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D GEM_2945 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D GEM_2381 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D GEM_1248 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D GEM_0802 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GEM_5632 phenylhydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D GEM_5374 N-carbamyl-L-amino acid amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D GEM_4519 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D GEM_2202 Beta-ureidopropionase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D GEM_0987 aspartate alpha-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:bct00780]
D GEM_0590 type 11 methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D GEM_0675 3-oxoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D GEM_2394 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D GEM_4091 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_1011 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_0683 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_2396 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_3660 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_1118 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_2012 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_4103 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_5772 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_4971 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_1432 (3R)-hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D GEM_0505 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D GEM_2741 Glycine C-acetyltransferase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D GEM_0506 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D GEM_0504 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D GEM_0503 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D GEM_0533 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:bct00785]
D GEM_0548 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D GEM_0549 lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D GEM_1588 lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D GEM_1923 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_1293 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_5342 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D GEM_1291 pyruvate dehydrogenase subunit E1 K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D GEM_1587 Alpha/beta hydrolase fold:Biotin/lipoyl attachment K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GEM_1292 dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D GEM_1925 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D GEM_1924 dihydrolipoamide acetyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D GEM_2217 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D GEM_2216 transketolase, central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D GEM_2215 catalytic domain of component of dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D GEM_0135 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D GEM_0137 glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D GEM_0136 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:bct00790]
D GEM_5531 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D GEM_4870 putative GTP cyclohydrolase K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D GEM_5330 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GEM_5331 putative alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GEM_0717 NUDIX hydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D GEM_3306 putative dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D GEM_0462 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D GEM_2768 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D GEM_2156 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D GEM_2438 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D GEM_4799 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D GEM_3746 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D GEM_4232 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D GEM_2573 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D GEM_2771 Chorismate binding-like protein K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D GEM_0318 putative 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D GEM_0072 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D GEM_0073 phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D GEM_0317 organic radical activating enzyme-like protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D GEM_0316 exoenzyme S synthesis protein B K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D GEM_0704 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D GEM_2409 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D GEM_0795 molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D GEM_1574 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D GEM_2441 molybdenum cofactor biosynthesis protein MogA K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D GEM_2411 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D GEM_1572 Molybdopterin biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D GEM_3648 hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D GEM_2410 molybdopterin-guanine dinucleotide biosynthesis protein MobA K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:bct00670]
D GEM_2438 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D GEM_1288 Methylenetetrahydrofolate dehydrogenase (NADP+) / Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D GEM_2727 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_3359 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_5265 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D GEM_0920 PurN protein K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D GEM_2832 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D GEM_1563 putative formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D GEM_0308 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D GEM_0137 glycine cleavage system aminomethyltransferase T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D GEM_0520 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GEM_0521 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GEM_2435 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D GEM_0660 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D GEM_3370 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D GEM_0183 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D GEM_0407 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:bct00860]
D GEM_1378 GltX protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GEM_3014 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D GEM_5635 aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D GEM_2569 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D GEM_3143 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D GEM_1006 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D GEM_0106 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D GEM_1114 coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D GEM_2610 coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D GEM_2863 protoporphyrinogen ix oxidase K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D GEM_2778 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D GEM_1007 protein of unknown function DUF513 hemX K13543 hemDX; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D GEM_1760 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D GEM_3950 uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D GEM_0958 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D GEM_0602 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D GEM_0601 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D GEM_0959 cobalamin (vitamin B12) biosynthesis CbiX protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D GEM_1744 precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D GEM_1742 precorrin-3B synthase K02229 cobG; precorrin-3B synthase [EC:1.14.13.83]
D GEM_1745 precorrin-3B C(17)-methyltransferase K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131]
D GEM_1738 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D GEM_1761 Cobalamin biosynthesis protein CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D GEM_1739 cobalt-precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D GEM_1740 cobalt-precorrin-6A synthase K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D GEM_1741 precorrin-6y C5,15-methyltransferase subunit CbiE K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D GEM_1743 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D GEM_1763 CobB/CobQ domain protein glutamine amidotransferase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D GEM_1757 cobaltochelatase subunit CobN K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D GEM_2790 atp:cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D GEM_1762 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D GEM_0983 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D GEM_0981 Adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D GEM_2446 CobD/CbiB family protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D GEM_0980 putative threonine-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC
D GEM_0982 cobinamide kinase/cobinamide phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D GEM_0977 cobalamin synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D GEM_0976 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D GEM_0978 phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D GEM_1756 Magnesium chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
D GEM_0189 pyridoxamine 5'-phosphate oxidase-like protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D GEM_1220 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:bct00130]
D GEM_1062 Chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D GEM_0684 endoribonuclease L-PSP K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45]
D GEM_2798 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D GEM_2578 UbiD family decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D GEM_3018 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D GEM_3000 ubiquinone biosynthesis hydroxylase family protein K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D GEM_2482 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D GEM_2829 ubiquinone biosynthesis coq6 family K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D GEM_0709 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D GEM_2969 ubiquinone biosynthesis protein COQ7-like protein K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D GEM_4558 Ribosyldihydronicotinamide dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D GEM_4996 NAD(P)H dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D GEM_0226 flavodoxin/nitric oxide synthase K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D GEM_5420 NmrA family protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D GEM_0232 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GEM_4236 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:bct00900]
D GEM_4871 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D GEM_1427 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D GEM_1481 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D GEM_0639 Ipk protein K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D GEM_1482 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D GEM_1614 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D GEM_0931 IspH protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D GEM_5668 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D GEM_4087 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4093 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0669 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1523 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1636 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4665 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_3018 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D GEM_4872 Polyprenyl synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D GEM_2939 trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D GEM_1425 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D GEM_2443 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis [PATH:bct00909]
D GEM_4358 Squalene/phytoene synthase K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
D GEM_5581 squalene-hopene cyclase K06045 shc; squalene-hopene/tetraprenyl-beta-curcumene cyclase [EC:5.4.99.17 4.2.1.129]
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:bct00906]
D GEM_1490 squalene synthase HpnD K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation [PATH:bct00903]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_0695 Alpha/beta hydrolase fold-3 domain protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
C 00907 Pinene, camphor and geraniol degradation [PATH:bct00907]
D GEM_2980 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D GEM_4690 NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D GEM_1716 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D GEM_0481 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D GEM_0722 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D GEM_2885 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:bct00523]
D GEM_2654 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D GEM_2655 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D GEM_2653 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D GEM_2652 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures [PATH:bct01054]
D GEM_4526 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D GEM_2251 aspartate racemase protein K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D GEM_2655 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:bct00946]
D GEM_4672 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids [PATH:bct00996]
D GEM_5614 Enoyl-CoA hydratase/isomerase K18383 ferB; feruloyl-CoA hydratase/lyase [EC:4.1.2.61]
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis [PATH:bct00311]
D GEM_5292 peptidase C45, acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase K19200 IAL; isopenicillin-N N-acyltransferase like protein
D GEM_3511 Beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:bct00332]
D GEM_2935 gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D GEM_2864 ProA protein K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:bct00261]
D GEM_1783 MbtH domain protein K05375 mbtH; MbtH protein
D GEM_1235 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D GEM_0957 translation elongation factor Tu K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D GEM_0956 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GEM_1236 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D GEM_1355 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D GEM_4807 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D GEM_1968 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D GEM_1333 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D GEM_0493 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D GEM_2870 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D GEM_3661 hypothetical protein K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:bct00521]
D GEM_2566 bifunctional glucokinase/RpiR family transcriptional regulator K00845 glk; glucokinase [EC:2.7.1.2]
D GEM_2630 Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D GEM_1344 inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D GEM_2002 Inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D GEM_2654 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D GEM_2655 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D GEM_2653 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D GEM_2652 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D GEM_2566 bifunctional glucokinase/RpiR family transcriptional regulator K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:bct00525]
D GEM_2654 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D GEM_2655 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:bct00401]
D GEM_2476 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D GEM_0634 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GEM_3096 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GEM_1205 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_1265 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_4282 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D GEM_2991 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D GEM_2992 anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D GEM_2397 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GEM_2180 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GEM_4091 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_1011 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_0683 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_2396 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_3660 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_1118 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_2012 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_4103 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_5772 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_4971 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics [PATH:bct00998]
D GEM_0682 acyl carrier protein K02078 acpP; acyl carrier protein
D GEM_2395 acyl carrier protein K02078 acpP; acyl carrier protein
D GEM_4495 2,3-dimethylmalate lyase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9]
D GEM_4496 thiamine pyrophosphate binding domain-containing protein K09459 E4.1.1.82; phosphonopyruvate decarboxylase [EC:4.1.1.82]
C 00999 Biosynthesis of various plant secondary metabolites [PATH:bct00999]
D GEM_0360 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D GEM_2909 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D GEM_4646 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D GEM_4672 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
D GEM_1770 ornibactin biosynthesis protein K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102]
D GEM_1774 ornibactin biosynthesis protein K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:bct00362]
D GEM_4994 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D GEM_4993 muconate and chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D GEM_4995 muconolactone delta-isomerase K03464 catC; muconolactone D-isomerase [EC:5.3.3.4]
D GEM_5525 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D GEM_5528 3-oxoacid CoA-transferase subunit A K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D GEM_5527 3-oxoacid CoA-transferase subunit B K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D GEM_0722 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D GEM_2982 Acetyl-CoA acetyltransferase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D GEM_5841 beta-ketoadipyl CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D GEM_5413 phenol hydroxylase subunit K16249 dmpK; phenol/toluene 2-monooxygenase (NADH) P0/A0
D GEM_5412 methane/phenol/toluene hydroxylase K16243 dmpL; phenol/toluene 2-monooxygenase (NADH) P1/A1 [EC:1.14.13.244 1.14.13.243]
D GEM_5411 monooxygenase component MmoB/DmpM K16244 dmpM; phenol/toluene 2-monooxygenase (NADH) P2/A2 [EC:1.14.13.244 1.14.13.243]
D GEM_5410 methane/phenol/toluene hydroxylase K16242 dmpN; phenol/toluene 2-monooxygenase (NADH) P3/A3 [EC:1.14.13.244 1.14.13.243]
D GEM_5409 phenol hydroxylase region K16245 dmpO; phenol/toluene 2-monooxygenase (NADH) P4/A4 [EC:1.14.13.244 1.14.13.243]
D GEM_5408 oxidoreductase FAD/NAD(P)-binding protein K16246 dmpP; phenol/toluene 2-monooxygenase (NADH) P5/A5 [EC:1.14.13.244 1.14.13.243]
D GEM_5406 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D GEM_5398 Alpha/beta hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
D GEM_4111 2-oxopent-4-enoate hydratase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132]
D GEM_5403 4-oxalocrotonate decarboxylase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132]
D GEM_5401 4-hydroxy-2-ketovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D GEM_4109 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D GEM_5402 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D GEM_4110 acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D GEM_5404 betaine-aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85]
D GEM_5399 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_3795 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_4653 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_5805 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_4897 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_5400 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77]
D GEM_5252 intradiol ring-cleavage dioxygenase K04098 chqB; hydroxyquinol 1,2-dioxygenase [EC:1.13.11.37]
D GEM_4965 Alcohol dehydrogenase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32]
D GEM_5253 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32]
D GEM_4446 protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D GEM_4445 protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
D GEM_5526 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D GEM_4533 carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D GEM_1581 carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D GEM_3322 carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D GEM_5524 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D GEM_5098 carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D GEM_3775 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D GEM_1307 ferredoxin, 2Fe-2S type K04755 fdx; ferredoxin, 2Fe-2S
D GEM_5529 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D GEM_4469 salicylate hydroxylase K22270 nagX; 3-hydroxybenzoate 6-monooxygenase [EC:1.14.13.24]
D GEM_4690 NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D GEM_0555 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D GEM_1521 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D GEM_0721 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D GEM_2715 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D GEM_2980 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D GEM_3929 3-hydroxy-acyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D GEM_4087 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4093 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0669 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1523 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1636 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4665 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:bct00627]
D GEM_5096 FAD dependent oxidoreductase K10215 ethA; monooxygenase [EC:1.14.13.-]
D GEM_0184 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GEM_3786 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GEM_2822 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D GEM_5672 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D GEM_0847 benzoylformate decarboxylase K01576 mdlC; benzoylformate decarboxylase [EC:4.1.1.7]
D GEM_0848 aldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
D GEM_3018 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D GEM_4990 Rieske (2Fe-2S) domain-containing protein K16319 andAc; anthranilate 1,2-dioxygenase large subunit [EC:1.14.12.1]
D GEM_4989 aromatic-ring-hydroxylating dioxygenase subunit beta K16320 andAd; anthranilate 1,2-dioxygenase small subunit [EC:1.14.12.1]
D GEM_4988 Rieske (2Fe-2S) protein K18248 andAb; anthranilate 1,2-dioxygenase ferredoxin component
D GEM_4987 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K18249 andAa; anthranilate 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.-]
D GEM_5615 Aldehyde Dehydrogenase K21802 vdh; vanillin dehydrogenase [EC:1.2.1.67]
D GEM_3253 Vanillate monooxygenase K03862 vanA; vanillate monooxygenase [EC:1.14.13.82]
D GEM_3252 ferredoxin K03863 vanB; vanillate monooxygenase ferredoxin subunit
D GEM_2980 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00364 Fluorobenzoate degradation [PATH:bct00364]
D GEM_4994 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D GEM_0185 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D GEM_4876 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D GEM_4993 muconate and chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D GEM_4965 Alcohol dehydrogenase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32]
D GEM_5253 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32]
C 00625 Chloroalkane and chloroalkene degradation [PATH:bct00625]
D GEM_4746 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D GEM_1655 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D GEM_1012 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_4717 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_1658 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_5254 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D GEM_3352 alcohol dehydrogenase GroES-like protein K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]
D GEM_0476 alpha/beta hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
D GEM_3708 hydrolase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D GEM_4587 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D GEM_3009 HAD family hydrolase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D GEM_1390 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:bct00361]
D GEM_5413 phenol hydroxylase subunit K16249 dmpK; phenol/toluene 2-monooxygenase (NADH) P0/A0
D GEM_5412 methane/phenol/toluene hydroxylase K16243 dmpL; phenol/toluene 2-monooxygenase (NADH) P1/A1 [EC:1.14.13.244 1.14.13.243]
D GEM_5411 monooxygenase component MmoB/DmpM K16244 dmpM; phenol/toluene 2-monooxygenase (NADH) P2/A2 [EC:1.14.13.244 1.14.13.243]
D GEM_5410 methane/phenol/toluene hydroxylase K16242 dmpN; phenol/toluene 2-monooxygenase (NADH) P3/A3 [EC:1.14.13.244 1.14.13.243]
D GEM_5409 phenol hydroxylase region K16245 dmpO; phenol/toluene 2-monooxygenase (NADH) P4/A4 [EC:1.14.13.244 1.14.13.243]
D GEM_5408 oxidoreductase FAD/NAD(P)-binding protein K16246 dmpP; phenol/toluene 2-monooxygenase (NADH) P5/A5 [EC:1.14.13.244 1.14.13.243]
D GEM_4994 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D GEM_0185 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D GEM_4876 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D GEM_4965 Alcohol dehydrogenase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32]
D GEM_5253 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32]
D GEM_5252 intradiol ring-cleavage dioxygenase K04098 chqB; hydroxyquinol 1,2-dioxygenase [EC:1.13.11.37]
D GEM_2096 mhqA K10676 tfdB; 2,4-dichlorophenol 6-monooxygenase [EC:1.14.13.20]
D GEM_4993 muconate and chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D GEM_5406 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D GEM_3708 hydrolase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D GEM_4587 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D GEM_3009 HAD family hydrolase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D GEM_1390 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D GEM_0476 alpha/beta hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3]
C 00623 Toluene degradation [PATH:bct00623]
D GEM_5413 phenol hydroxylase subunit K16249 dmpK; phenol/toluene 2-monooxygenase (NADH) P0/A0
D GEM_5412 methane/phenol/toluene hydroxylase K16243 dmpL; phenol/toluene 2-monooxygenase (NADH) P1/A1 [EC:1.14.13.244 1.14.13.243]
D GEM_5411 monooxygenase component MmoB/DmpM K16244 dmpM; phenol/toluene 2-monooxygenase (NADH) P2/A2 [EC:1.14.13.244 1.14.13.243]
D GEM_5410 methane/phenol/toluene hydroxylase K16242 dmpN; phenol/toluene 2-monooxygenase (NADH) P3/A3 [EC:1.14.13.244 1.14.13.243]
D GEM_5409 phenol hydroxylase region K16245 dmpO; phenol/toluene 2-monooxygenase (NADH) P4/A4 [EC:1.14.13.244 1.14.13.243]
D GEM_5408 oxidoreductase FAD/NAD(P)-binding protein K16246 dmpP; phenol/toluene 2-monooxygenase (NADH) P5/A5 [EC:1.14.13.244 1.14.13.243]
D GEM_5810 methanesulfonate monooxygenase component K15765 tmoF; toluene monooxygenase electron transfer component [EC:1.18.1.3]
D GEM_0848 aldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
D GEM_4994 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D GEM_4993 muconate and chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D GEM_0185 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D GEM_4876 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D GEM_4965 Alcohol dehydrogenase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32]
D GEM_5253 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32]
C 00622 Xylene degradation [PATH:bct00622]
D GEM_0848 aldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
D GEM_5406 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D GEM_5398 Alpha/beta hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
D GEM_5404 betaine-aldehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85]
D GEM_5399 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_3795 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_4653 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_5805 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_4897 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_5400 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77]
D GEM_4111 2-oxopent-4-enoate hydratase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132]
D GEM_5403 4-oxalocrotonate decarboxylase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132]
D GEM_5401 4-hydroxy-2-ketovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D GEM_4109 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D GEM_5402 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D GEM_4110 acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
C 00633 Nitrotoluene degradation [PATH:bct00633]
D GEM_4106 N-ethylmaleimide reductase NemA K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D GEM_5506 NADH:flavin oxidoreductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D GEM_5775 NADH-flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D GEM_5801 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D GEM_3307 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D GEM_0722 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:bct00643]
D GEM_3682 Betaine-aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D GEM_5541 Aldehyde Dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D GEM_5083 NAD-dependent aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D GEM_2708 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D GEM_4470 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D GEM_0629 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D GEM_2707 fumarylacetoacetate hydrolase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D GEM_0525 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D GEM_0184 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GEM_3786 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D GEM_2822 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D GEM_5406 catechol 2,3-dioxygenase K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D GEM_5398 Alpha/beta hydrolase K10216 dmpD; 2-hydroxymuconate-semialdehyde hydrolase [EC:3.7.1.9]
D GEM_4081 Acyl CoA-acetate/3-ketoacid CoA transferase beta subunit K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12]
C 00791 Atrazine degradation
D GEM_2623 UreC protein K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D GEM_2622 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D GEM_2621 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:bct00930]
D GEM_0778 ThiJ/PfpI domain protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103]
D GEM_2548 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3]
D GEM_0695 Alpha/beta hydrolase fold-3 domain protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
D GEM_2980 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D GEM_4690 NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00363 Bisphenol degradation
D GEM_4316 cupin 2 domain-containing protein K05913 dad; 2,4'-dihydroxyacetophenone dioxygenase [EC:1.13.11.41]
C 00621 Dioxin degradation [PATH:bct00621]
D GEM_5399 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_3795 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_4653 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_5805 hypothetical protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_4897 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D GEM_5400 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77]
D GEM_4111 2-oxopent-4-enoate hydratase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132]
D GEM_5403 4-oxalocrotonate decarboxylase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132]
D GEM_5401 4-hydroxy-2-ketovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D GEM_4109 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D GEM_5402 acetaldehyde dehydrogenase (acetylating) K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D GEM_4110 acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
C 00626 Naphthalene degradation [PATH:bct00626]
D GEM_4746 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D GEM_1655 alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
D GEM_4446 protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D GEM_4445 protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
C 00365 Furfural degradation
C 00984 Steroid degradation [PATH:bct00984]
D GEM_4737 hypothetical protein K03333 choD; cholesterol oxidase [EC:1.1.3.6]
D GEM_4740 hypothetical protein K03333 choD; cholesterol oxidase [EC:1.1.3.6]
D GEM_4009 fumarate reductase/succinate dehydrogenase flavoprotein domain protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
D GEM_3819 fumarate reductase/succinate dehydrogenase flavoprotein domain protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
D GEM_4096 Rieske (2Fe-2S) domain protein K15982 kshA; 3-ketosteroid 9alpha-monooxygenase subunit A [EC:1.14.15.30]
D GEM_4102 3-ketosteroid-9-alpha-hydroxylase oxygenase subunit K15982 kshA; 3-ketosteroid 9alpha-monooxygenase subunit A [EC:1.14.15.30]
D GEM_4012 ferredoxin K15983 kshB; 3-ketosteroid 9alpha-monooxygenase subunit B [EC:1.14.15.30]
D GEM_4008 putative acyl-CoA dehydrogenase K16047 hsaA; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase [EC:1.14.14.12]
D GEM_4079 glyoxalase/bleomycin resistance protein/dioxygenase K16049 hsaC; 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione 4,5-dioxygenase [EC:1.13.11.25]
D GEM_4115 alpha/beta hydrolase fold protein K16050 hsaD; 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase [EC:3.7.1.17]
D GEM_4013 AMP-dependent synthetase and ligase K18687 fadD3; HIP---CoA ligase [EC:6.2.1.41]
D GEM_4107 AMP-dependent synthetase and ligase K18687 fadD3; HIP---CoA ligase [EC:6.2.1.41]
D GEM_4149 short-chain dehydrogenase/reductase SDR K05296 E1.1.1.51; 3(or 17)beta-hydroxysteroid dehydrogenase [EC:1.1.1.51]
D GEM_5661 hypothetical protein K01822 E5.3.3.1; steroid Delta-isomerase [EC:5.3.3.1]
D GEM_4153 hypothetical protein K16051 tesI; 3-oxo-5alpha-steroid 4-dehydrogenase [EC:1.3.99.5]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:bct03020]
D GEM_3181 RpoB protein K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D GEM_3180 DNA-directed RNA polymerase subunit beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D GEM_3147 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D GEM_2527 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D GEM_4243 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:bct03010]
D GEM_2473 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D GEM_1421 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D GEM_3167 RpsC protein K02982 RP-S3; small subunit ribosomal protein S3
D GEM_3148 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D GEM_3156 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D GEM_1551 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D GEM_3177 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D GEM_3159 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D GEM_2843 RpsI protein K02996 RP-S9; small subunit ribosomal protein S9
D GEM_3174 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D GEM_3149 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D GEM_3178 RpsL protein K02950 RP-S12; small subunit ribosomal protein S12
D GEM_3150 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D GEM_3160 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D GEM_1156 RpsO protein K02956 RP-S15; small subunit ribosomal protein S15
D GEM_2451 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D GEM_3164 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D GEM_1553 RpsR protein K02963 RP-S18; small subunit ribosomal protein S18
D GEM_3169 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D GEM_0878 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D GEM_0149 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D GEM_4867 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D GEM_3184 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D GEM_3170 RplB protein K02886 RP-L2; large subunit ribosomal protein L2
D GEM_3173 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D GEM_3172 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D GEM_3161 RplE protein K02931 RP-L5; large subunit ribosomal protein L5
D GEM_3158 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D GEM_3182 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D GEM_1554 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D GEM_3183 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D GEM_3185 RplK protein K02867 RP-L11; large subunit ribosomal protein L11
D GEM_2844 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D GEM_3163 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D GEM_3154 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D GEM_3166 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D GEM_3146 RplQ protein K02879 RP-L17; large subunit ribosomal protein L17
D GEM_3157 RplR protein K02881 RP-L18; large subunit ribosomal protein L18
D GEM_2448 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D GEM_1954 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D GEM_2938 RplU protein K02888 RP-L21; large subunit ribosomal protein L21
D GEM_3168 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D GEM_3171 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D GEM_3162 RplX protein K02895 RP-L24; large subunit ribosomal protein L24
D GEM_0636 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D GEM_2937 RpmA protein K02899 RP-L27; large subunit ribosomal protein L27
D GEM_0928 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D GEM_3165 RpmC protein K02904 RP-L29; large subunit ribosomal protein L29
D GEM_3155 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D GEM_1591 RpmE2 protein K02909 RP-L31; large subunit ribosomal protein L31
D GEM_2400 RpmF protein K02911 RP-L32; large subunit ribosomal protein L32
D GEM_0927 RpmG protein K02913 RP-L33; large subunit ribosomal protein L33
D GEM_0264 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D GEM_1955 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D GEM_3151 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D GEM_0243 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GEM_1194 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GEM_0244 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GEM_1197 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GEM_0245 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GEM_3189 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GEM_2973 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GEM_1198 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:bct00970]
D GEM_1196 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GEM_1379 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GEM_0201 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GEM_2133 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GEM_1044 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GEM_2523 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GEM_2525 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GEM_2524 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GEM_0142 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GEM_2420 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D GEM_2421 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D GEM_1381 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GEM_1385 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GEM_1506 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GEM_1383 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GEM_2371 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D GEM_0638 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D GEM_1380 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GEM_1382 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GEM_1384 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GEM_2372 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GEM_2373 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GEM_2374 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GEM_2599 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GEM_1860 tRNA-His K14226 tRNA-His; tRNA His
D GEM_1195 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D GEM_1161 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_1885 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_1888 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_1887 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_1491 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_0950 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_3440 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_0299 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D GEM_2736 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D GEM_0781 tRNA-Met K14230 tRNA-Met; tRNA Met
D GEM_4863 tRNA-Met K14230 tRNA-Met; tRNA Met
D GEM_1284 tRNA-Met K14230 tRNA-Met; tRNA Met
D GEM_1872 tRNA-Met K14230 tRNA-Met; tRNA Met
D GEM_1108 tRNA-Met K14230 tRNA-Met; tRNA Met
D GEM_0315 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D GEM_2144 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GEM_1947 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GEM_2940 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GEM_2551 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GEM_2533 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GEM_1227 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GEM_1356 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GEM_2507 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GEM_3076 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GEM_3188 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D GEM_0246 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D GEM_1263 tRNA-Val K14237 tRNA-Val; tRNA Val
D GEM_1505 tRNA-Val K14237 tRNA-Val; tRNA Val
D GEM_0006 tRNA-Val K14237 tRNA-Val; tRNA Val
D GEM_1958 tRNA-Val K14237 tRNA-Val; tRNA Val
D GEM_4772 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D GEM_1378 GltX protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GEM_0326 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D GEM_2498 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D GEM_0327 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D GEM_0325 aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D GEM_2025 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D GEM_2021 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D GEM_0716 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GEM_0745 glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D GEM_0744 glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D GEM_1957 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D GEM_2552 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D GEM_4774 selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D GEM_1351 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D GEM_0994 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D GEM_1563 putative formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D GEM_0308 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D GEM_1989 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D GEM_2867 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GEM_0918 Isoleucyl-tRNA synthetase, class Ia K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D GEM_1310 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D GEM_0518 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GEM_2932 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D GEM_1615 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D GEM_1953 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D GEM_1952 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D GEM_2840 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GEM_1331 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:bct03060]
D GEM_3153 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D GEM_3187 Preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D GEM_1160 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D GEM_2807 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D GEM_2808 SecD/SecF/SecDF export membrane protein K03074 secF; preprotein translocase subunit SecF
D GEM_2806 YajC protein K03210 yajC; preprotein translocase subunit YajC
D GEM_0266 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GEM_2950 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D GEM_0585 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D GEM_2929 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D GEM_0630 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D GEM_3086 twin arginine translocase protein A K03116 tatA; sec-independent protein translocase protein TatA
D GEM_3085 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D GEM_3084 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D GEM_2386 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D GEM_0917 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:bct04122]
D GEM_5260 class V aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GEM_1302 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GEM_4875 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D GEM_1996 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D GEM_2825 tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D GEM_1574 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D GEM_2409 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D GEM_1573 molybdopterin converting factor subunit 1 K03636 moaD; sulfur-carrier protein
D GEM_3286 thiamine S protein K03636 moaD; sulfur-carrier protein
D GEM_0580 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D GEM_0795 molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D GEM_2441 molybdenum cofactor biosynthesis protein MogA K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D GEM_3111 sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:bct03018]
D GEM_2933 dinucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D GEM_2408 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D GEM_1321 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GEM_1157 polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D GEM_0767 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D GEM_5213 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D GEM_1090 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D GEM_1884 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D GEM_3179 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D GEM_1595 Rho protein K03628 rho; transcription termination factor Rho
D GEM_2773 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D GEM_2666 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GEM_5191 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GEM_1902 RNA-binding protein Hfq / domain of unknown function K03666 hfq; host factor-I protein
D GEM_1619 Small nuclear ribonucleoprotein (Sm protein) K03666 hfq; host factor-I protein
D GEM_2147 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D GEM_4436 putative polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D GEM_2767 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:bct03030]
D GEM_2518 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_5620 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_2170 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_1093 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GEM_1597 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GEM_1533 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GEM_2865 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GEM_0963 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D GEM_0262 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GEM_1555 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D GEM_4865 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D GEM_0664 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GEM_2169 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D GEM_1435 RnhB protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D GEM_4878 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GEM_1416 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:bct03410]
D GEM_1079 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D GEM_2996 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D GEM_0644 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D GEM_0666 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D GEM_0643 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D GEM_0278 alcohol dehydrogenase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GEM_1352 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GEM_5233 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GEM_0150 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D GEM_0665 uracil-DNA glycosylase superfamily protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D GEM_1398 phage SPO1 DNA polymerase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D GEM_0329 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D GEM_1283 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D GEM_4878 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GEM_1312 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D GEM_1416 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:bct03420]
D GEM_1480 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D GEM_0662 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D GEM_1206 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D GEM_2376 UvrC protein K03703 uvrC; excinuclease ABC subunit C
D GEM_1988 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D GEM_4878 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GEM_1416 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D GEM_4243 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03430 Mismatch repair [PATH:bct03430]
D GEM_1339 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D GEM_2762 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D GEM_1988 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D GEM_0886 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D GEM_4873 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D GEM_1312 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D GEM_0664 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GEM_1093 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GEM_0262 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GEM_1597 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GEM_2865 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GEM_1533 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GEM_2518 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_5620 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_2170 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_0963 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D GEM_1416 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:bct03440]
D GEM_1312 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D GEM_0664 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GEM_2383 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D GEM_1601 recombination protein RecR K06187 recR; recombination protein RecR
D GEM_0785 RecA protein K03553 recA; recombination protein RecA
D GEM_4878 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GEM_2834 Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
D GEM_2835 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D GEM_2833 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D GEM_2803 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D GEM_2275 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D GEM_2276 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D GEM_2274 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D GEM_1093 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GEM_0262 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GEM_1597 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GEM_2865 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GEM_1533 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GEM_2518 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_5620 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_2170 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_0963 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D GEM_0107 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D GEM_1552 primosomal replication protein N-like protein K02686 priB; primosomal replication protein N
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:bct03250]
D GEM_1349 cyclophilin type peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:bct02010]
D GEM_0494 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D GEM_1820 sulfate ABC transporter periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D GEM_1819 Sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D GEM_1818 sulfate ABC transporter permease K02047 cysW; sulfate/thiosulfate transport system permease protein
D GEM_1817 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D GEM_0550 taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D GEM_0552 Binding-protein-dependent transport systems inner membrane component K15552 tauC; taurine transport system permease protein
D GEM_0551 ABC transporter-like protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D GEM_1886 aliphatic sulfonates ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4624 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_3806 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4370 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4616 nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4600 nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4163 ABC transporter K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_0021 putative transport protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4366 NMT1/THI5-like domain-containing protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_5152 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_1866 binding-protein-dependent transport system inner membrane protein K15554 ssuC; sulfonate transport system permease protein
D GEM_4617 binding-protein-dependent transport system inner membrane protein K15554 ssuC; sulfonate transport system permease protein
D GEM_4618 nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein K15554 ssuC; sulfonate transport system permease protein
D GEM_4367 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D GEM_0019 binding-protein-dependent transport system inner membrane protein K15554 ssuC; sulfonate transport system permease protein
D GEM_4619 nitrate/sulfonate/bicarbonate ABC transporter ATPase K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D GEM_1865 ABC transporter-like protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D GEM_4368 ABC transporter-like protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D GEM_0020 nitrate/sulfonate/bicarbonate ABC transporter ATPase K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D GEM_4892 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D GEM_3387 putative molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein
D GEM_4893 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D GEM_4894 ABC-type sulfate/molybdate transport systems ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D GEM_2280 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D GEM_2671 ABC Fe3+ transporter, periplasmic ligand binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D GEM_0289 extracellular solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D GEM_4374 extracellular solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D GEM_2281 spermidine/putrescine ABC transporter inner membrane protein K02011 afuB; iron(III) transport system permease protein
D GEM_2672 Fe3+ ABC transporter inner membrane protein K02011 afuB; iron(III) transport system permease protein
D GEM_0287 Ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D GEM_4375 ABC Fe3+ siderophore transporter, inner membrane subunit K02011 afuB; iron(III) transport system permease protein
D GEM_2282 ABC transporter-like protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D GEM_2673 ABC transporter ATPase K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D GEM_0288 spermidine/putrescine ABC transporter ATPase subuni K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D GEM_4376 ABC transporter, ATPase subunit K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D GEM_5294 ABC spermidine/putrescine transporter, periplasmic ligand binding protein K11073 potF; putrescine transport system substrate-binding protein
D GEM_1662 extracellular solute-binding protein K11073 potF; putrescine transport system substrate-binding protein
D GEM_0448 putrescine ABC transporter binding exported protein K11073 potF; putrescine transport system substrate-binding protein
D GEM_1665 spermidine/putrescine ABC transporter inner membrane protein K11074 potI; putrescine transport system permease protein
D GEM_0445 Ornithine carbamoyltransferase K11074 potI; putrescine transport system permease protein
D GEM_5315 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein
D GEM_1664 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein
D GEM_0446 Putrescine transport system permease protein PotH K11075 potH; putrescine transport system permease protein
D GEM_5316 spermidine/putrescine ABC transporter ATPase K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D GEM_1663 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D GEM_0447 spermidine/putrescine ABC transporter ATPase K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D GEM_5897 2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein K11081 phnS; 2-aminoethylphosphonate transport system substrate-binding protein
D GEM_5900 ABC transporter, inner membrane subunit K11082 phnV; 2-aminoethylphosphonate transport system permease protein
D GEM_5899 ABC transporter, inner membrane subunit K11083 phnU; 2-aminoethylphosphonate transport system permease protein
D GEM_5898 ABC transporter ATP-binding protein K11084 phnT; 2-aminoethylphosphonate transport system ATP-binding protein
D GEM_3282 substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D GEM_3368 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D GEM_3373 substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D GEM_3395 choline ABC transporter, periplasmic binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D GEM_4716 choline ABC transporter, periplasmic binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D GEM_3280 putative glycine-betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein
D GEM_3279 ABC glycine betaine/L-proline transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D GEM_3314 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D GEM_3311 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D GEM_3313 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D GEM_3312 ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D GEM_0842 ABC transporter-like protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D GEM_2560 ABC transporter-like protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D GEM_0838 sugar ABC transporter periplasmic substrate-binding protein K10227 smoE; polyol transport system substrate-binding protein
D GEM_0839 binding-protein-dependent transport system inner membrane protein K10228 smoF; polyol transport system permease protein
D GEM_0840 putative ABC transporter permease K10229 smoG; polyol transport system permease protein
D GEM_3104 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein
D GEM_5585 toluene tolerance protein K07323 mlaC; phospholipid transport system substrate-binding protein
D GEM_0538 mammalian cell entry protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D GEM_3106 mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D GEM_0536 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D GEM_3107 toluene tolerance abc permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D GEM_3103 anti-anti-sigma regulatory factor K07122 mlaB; phospholipid transport system transporter-binding protein
D GEM_0537 ABC transporter ATPase K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D GEM_3108 ABC transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D GEM_2563 maltose-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein
D GEM_2562 Permease of ABC sugar transporter K17316 gtsB; glucose/mannose transport system permease protein
D GEM_2561 binding-protein-dependent transport systems inner membrane component K17317 gtsC; glucose/mannose transport system permease protein
D GEM_1892 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D GEM_3410 ABC sugar transporter, periplasmic ligand binding protein K10439 rbsB; ribose transport system substrate-binding protein
D GEM_1815 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D GEM_1813 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D GEM_1891 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D GEM_3409 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D GEM_1814 ABC transporter K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D GEM_1890 ABC transporter K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D GEM_3408 ABC transporter-like protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D GEM_2901 Monosaccharide-transporting ATPase K10537 araF; L-arabinose transport system substrate-binding protein
D GEM_5609 L-arabinose-binding periplasmic protein AraF K10537 araF; L-arabinose transport system substrate-binding protein
D GEM_2899 L-arabinose transporter permease K10538 araH; L-arabinose transport system permease protein
D GEM_5611 ribose/xylose/arabinose/galactoside ABC-type transport system permease component K10538 araH; L-arabinose transport system permease protein
D GEM_2900 L-arabinose transport ATP-binding protein AraG K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D GEM_5610 ABC transporter related protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D GEM_2006 Inositol transport system sugar-binding protein K17213 K17213; inositol transport system substrate-binding protein
D GEM_2004 monosaccharide-transporting ATPase K17214 K17214; inositol transport system permease protein
D GEM_2005 ABC transporter-like protein K17215 K17215; inositol transport system ATP-binding protein
D GEM_3126 extracellular solute-binding protein family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D GEM_3125 binding-protein-dependent transport system inner membrane protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D GEM_3124 glycerol-3-phosphate transporter membrane protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D GEM_3123 glycerol-3-phosphate transporter ATP-binding subunit K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D GEM_2370 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D GEM_2154 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D GEM_2153 PstC protein K02037 pstC; phosphate transport system permease protein
D GEM_2152 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D GEM_2151 ABC-type phosphate transport system ATPase component K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D GEM_2328 extracellular solute-binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_2682 extracellular solute-binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_0114 extracellular solute-binding protein family 3 K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_5767 lysine/arginine/ornithine ABC transporter periplasmic ligand-binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_4911 cationic amino acid ABC transporter, periplasmic binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_5117 ABC amino acid transporter, periplasmic ligand binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_5039 lysine/arginine/ornithine ABC transporter periplasmic-binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_2337 polar amino acid ABC transporter inner membrane subunit K10015 hisM; histidine transport system permease protein
D GEM_5037 ABC His/Glu/Gln/Arg/opine transporter, inner membrane subunit K10015 hisM; histidine transport system permease protein
D GEM_1022 polar amino acid ABC transporter, inner membrane subunit K10015 hisM; histidine transport system permease protein
D GEM_2338 polar amino acid ABC transporter, inner membrane subunit K10016 hisQ; histidine transport system permease protein
D GEM_5038 ABC His/Glu/Gln/Arg/opine transporter, inner membrane subunit K10016 hisQ; histidine transport system permease protein
D GEM_1023 amino acid ABC transporter permease K10016 hisQ; histidine transport system permease protein
D GEM_2336 histidine ABC transporter ATP-binding protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D GEM_5036 histidine ABC transporter ATP-binding protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D GEM_1021 amino acid ABC transporter ATPase K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D GEM_1024 cationic amino acid ABC transporter periplasmic binding protein K10014 hisJ; histidine transport system substrate-binding protein
D GEM_5651 periplasmic solute-binding protein K10014 hisJ; histidine transport system substrate-binding protein
D GEM_4538 glutamine ABC transporter periplasmic protein K10036 glnH; glutamine transport system substrate-binding protein
D GEM_4537 glutamine ABC transporter permease K10037 glnP; glutamine transport system permease protein
D GEM_4536 glutamine ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D GEM_2852 extracellular solute-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D GEM_1249 extracellular solute-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D GEM_2850 polar amino acid ABC transporter inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D GEM_2851 polar amino acid ABC transporter inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D GEM_2849 polar amino acid transporter ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D GEM_4767 glutamate/aspartate ABC transporter, ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D GEM_3595 Cystine ABC transporter, periplasmic cystine-binding protein FliY K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_1877 extracellular solute-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_0293 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_3050 extracellular solute-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_4769 extracellular solute-binding protein, family 3 K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_3594 amino acid ABC transporter inner membrane protein K10009 tcyB; L-cystine transport system permease protein
D GEM_1878 polar amino acid ABC transporter, inner membrane subunit K10009 tcyB; L-cystine transport system permease protein
D GEM_0294 putative amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D GEM_4768 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K10009 tcyB; L-cystine transport system permease protein
D GEM_0295 putative amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D GEM_3593 ABC transporter related protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D GEM_0080 ABC branched-chain amino acid family transporter, periplasmic ligand binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0084 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0951 branched-chain amino acid transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_5388 putative periplasmic solute-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_2348 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0109 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_4521 branched chain amino acid ABC transporter periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0187 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_3709 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_1155 branched chain amino acid ABC transporter periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_3823 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_3423 putative amino acid ABC transporter solute binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_5222 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_5889 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_4273 branched chain amino acid ABC transporter periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_4668 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0081 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_0085 High-affinity branched-chain amino acid transport system permease protein LivH K01997 livH; branched-chain amino acid transport system permease protein
D GEM_0933 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_2016 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_4662 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_3822 ABC transporter permease protein K01997 livH; branched-chain amino acid transport system permease protein
D GEM_3424 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_0086 branched chain amino acid ABC transporter ATPase/inner membrane protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_3821 ABC transporter ATP-binding/permease protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_0082 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D GEM_0934 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D GEM_2015 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D GEM_4661 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D GEM_3425 leucine/isoleucine/valine transporter permease subunit K01998 livM; branched-chain amino acid transport system permease protein
D GEM_0078 ABC transporter-like protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_0935 ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_2014 ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_4664 ABC transporter-like protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_3426 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_0079 branched chain amino acid ABC transporter ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_0936 ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_0087 ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_2013 ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_4663 ABC transporter-like protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_3427 branched chain amino acid ABC transporter ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_5866 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D GEM_0606 family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D GEM_2459 YaeC family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D GEM_5765 YaeC family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D GEM_5869 binding-protein-dependent transport system inner membrane protein K02072 metI; D-methionine transport system permease protein
D GEM_2460 binding-protein-dependent transport system inner membrane protein K02072 metI; D-methionine transport system permease protein
D GEM_5868 ABC transporter K02071 metN; D-methionine transport system ATP-binding protein
D GEM_2461 ABC transporter K02071 metN; D-methionine transport system ATP-binding protein
D GEM_2615 branched chain amino acid ABC transporter periplasmic ligand-binding protein K11959 urtA; urea transport system substrate-binding protein
D GEM_2616 inner-membrane translocator K11960 urtB; urea transport system permease protein
D GEM_2617 ABC-type branched-chain amino acid transport system permease component K11961 urtC; urea transport system permease protein
D GEM_2618 ABC transporter-like protein K11962 urtD; urea transport system ATP-binding protein
D GEM_2619 urea ABC transporter, ATP-binding protein UrtE K11963 urtE; urea transport system ATP-binding protein
D GEM_5678 putative periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D GEM_5679 putative oligopeptide transporter permease K15581 oppB; oligopeptide transport system permease protein
D GEM_5680 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D GEM_5681 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D GEM_5682 oligopeptide/dipeptide ABC transporter ATPase K10823 oppF; oligopeptide transport system ATP-binding protein
D GEM_0397 extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D GEM_0514 extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D GEM_4622 extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D GEM_0398 oligopeptide/dipeptide ABC transporter, inner membrane subunit K12369 dppB; dipeptide transport system permease protein
D GEM_0399 dipeptide ABC transporter, permease protein DppC K12370 dppC; dipeptide transport system permease protein
D GEM_0400 oligopeptide/dipeptide ABC transporter, ATPase subunit K12371 dppD; dipeptide transport system ATP-binding protein
D GEM_0401 dipeptide transporter ATP-binding subunit K12372 dppF; dipeptide transport system ATP-binding protein
D GEM_4453 extracellular solute-binding protein family 5 K13889 gsiB; glutathione transport system substrate-binding protein
D GEM_4452 binding-protein-dependent transport systems inner membrane component K13890 gsiC; glutathione transport system permease protein
D GEM_4451 binding-protein-dependent transport systems inner membrane component K13891 gsiD; glutathione transport system permease protein
D GEM_4454 oligopeptide/dipeptide ABC transporter ATPase subunit K13892 gsiA; glutathione transport system ATP-binding protein
D GEM_1372 ABC transporter substrate-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D GEM_1373 binding-protein-dependent transport system inner membrane protein K13894 yejB; microcin C transport system permease protein
D GEM_1374 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein
D GEM_1375 ABC transporter K13896 yejF; microcin C transport system ATP-binding protein
D GEM_1778 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D GEM_1780 Ferrichrome transport system permease protein fhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D GEM_1781 ABC transporter-like protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D GEM_2756 lipopolysaccharide biosynthesis protein K10107 kpsE; capsular polysaccharide transport system permease protein
D GEM_2758 ABC-2 type transporter K09688 kpsM; capsular polysaccharide transport system permease protein
D GEM_2757 ABC transporter K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D GEM_2650 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D GEM_2649 ABC transporter K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D GEM_1826 ABC-2 type transporter, NodJ family K09694 nodJ; lipooligosaccharide transport system permease protein
D GEM_1825 nodulation ABC transporter NodI K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D GEM_1314 LolC/E family lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D GEM_4860 Lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D GEM_1315 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D GEM_0961 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D GEM_0960 putative permease K11720 lptG; lipopolysaccharide export system permease protein
D GEM_0651 ABC transporter-like protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D GEM_1099 Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D GEM_0029 ABC transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D GEM_0732 ABC transporter-like protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D GEM_4539 cysteine ABC transporter permease/ATP-binding protein K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD
D GEM_3477 hypothetical protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D GEM_1777 cyclic peptide transporter K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D GEM_3113 ABC transporter K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:bct02060]
D GEM_0579 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D GEM_0578 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D GEM_0619 PTS system N-acetylglucosamine-specific transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D GEM_0577 sugar transport PTS system IIa component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D GEM_0618 phosphoenolpyruvate-protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D GEM_0648 putative PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:bct03070]
D GEM_0031 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D GEM_3753 outer membrane efflux protein K12340 tolC; outer membrane protein
D GEM_0058 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D GEM_2293 putative secretion type II protein K02453 gspD; general secretion pathway protein D
D GEM_0055 general secretion pathway protein c K02452 gspC; general secretion pathway protein C
D GEM_0056 general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D GEM_2299 type II secretion system protein K02455 gspF; general secretion pathway protein F
D GEM_0054 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D GEM_2291 putative GSPG-related protein K02456 gspG; general secretion pathway protein G
D GEM_2292 GSPG-like signal peptide protein K02456 gspG; general secretion pathway protein G
D GEM_2300 GSPG-related transmembrane protein K02456 gspG; general secretion pathway protein G
D GEM_0053 General secretion pathway protein H K02457 gspH; general secretion pathway protein H
D GEM_0052 General secretion pathway protein I K02458 gspI; general secretion pathway protein I
D GEM_0051 putative general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D GEM_0050 General secretion pathway protein K K02460 gspK; general secretion pathway protein K
D GEM_0049 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D GEM_0048 General secretion pathway M protein K02462 gspM; general secretion pathway protein M
D GEM_0057 general secretory pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D GEM_2298 putative GSPE-related protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D GEM_2807 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D GEM_2808 SecD/SecF/SecDF export membrane protein K03074 secF; preprotein translocase subunit SecF
D GEM_3187 Preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D GEM_1160 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D GEM_3153 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D GEM_2806 YajC protein K03210 yajC; preprotein translocase subunit YajC
D GEM_0266 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GEM_2950 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D GEM_0630 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D GEM_0585 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D GEM_2929 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D GEM_3086 twin arginine translocase protein A K03116 tatA; sec-independent protein translocase protein TatA
D GEM_3085 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D GEM_3084 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D GEM_3619 Lytic transglycosylase catalytic K03194 virB1; type IV secretion system protein VirB1
D GEM_2123 ImpA family type VI secretion-associated protein K11904 vgrG; type VI secretion system secreted protein VgrG
D GEM_3884 ImpA family type VI secretion-associated protein K11904 vgrG; type VI secretion system secreted protein VgrG
D GEM_4203 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG
D GEM_2080 rhs element vgr K11904 vgrG; type VI secretion system secreted protein VgrG
D GEM_2076 rhs element vgr K11904 vgrG; type VI secretion system secreted protein VgrG
D GEM_3042 type vi secretion system protein K11903 hcp; type VI secretion system secreted protein Hcp
D GEM_4217 hypothetical protein K11906 vasD; type VI secretion system protein VasD
D GEM_3046 type vi secretion system protein K11906 vasD; type VI secretion system protein VasD
D GEM_4214 hypothetical protein K11891 impL; type VI secretion system protein ImpL
D GEM_3034 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D GEM_4215 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D GEM_3048 transmembrane protein K11892 impK; type VI secretion system protein ImpK
D GEM_4204 putative ATP-dependent Clp protease, ATP-binding subunit ClpB K11907 vasG; type VI secretion system protein VasG
D GEM_3038 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:bct02020]
D GEM_2148 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D GEM_2149 two component transcriptional regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D GEM_5330 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GEM_5331 putative alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GEM_2370 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D GEM_2154 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D GEM_1485 periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D GEM_1029 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D GEM_3663 periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D GEM_1486 osmolarity response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D GEM_1028 two component transcriptional regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D GEM_0901 two component transcriptional regulator, winged helix family protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D GEM_3664 two component transcriptional regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D GEM_0817 peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D GEM_2389 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D GEM_3944 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107]
D GEM_2318 RND family efflux transporter MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D GEM_2319 acriflavin resistance protein K07788 mdtB; multidrug efflux pump
D GEM_2320 acriflavin resistance protein K07789 mdtC; multidrug efflux pump
D GEM_4335 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D GEM_5280 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D GEM_4334 two component heavy metal response transcriptional regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D GEM_5279 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D GEM_5282 hypothetical protein K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF
D GEM_5284 Membrane fusion protein K07798 cusB; membrane fusion protein, copper/silver efflux system
D GEM_5283 CzcA family heavy metal efflux protein K07787 cusA; copper/silver efflux system protein
D GEM_0157 transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D GEM_0158 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D GEM_0148 flagellin K02406 fliC; flagellin
D GEM_0180 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D GEM_0159 flagellar motor component-like protein K02556 motA; chemotaxis protein MotA
D GEM_5023 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D GEM_5041 periplasmic sensor signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D GEM_1126 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D GEM_5040 two component transcriptional regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D GEM_1127 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D GEM_5044 potassium-transporting ATPase subunit A K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D GEM_1123 K+-transporting ATPase, A subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D GEM_5042 potassium-translocating P-type ATPase, B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D GEM_1124 potassium-transporting ATPase subunit B K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D GEM_5043 potassium-transporting ATPase K01548 kdpC; potassium-transporting ATPase KdpC subunit
D GEM_1125 potassium-transporting ATPase subunit C K01548 kdpC; potassium-transporting ATPase KdpC subunit
D GEM_0018 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D GEM_5155 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D GEM_4372 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D GEM_5154 two component transcriptional regulator K07774 tctD; two-component system, OmpR family, response regulator TctD
D GEM_4373 two component transcriptional regulator K07774 tctD; two-component system, OmpR family, response regulator TctD
D GEM_0017 two-component regulatory system, response regulator protein K07774 tctD; two-component system, OmpR family, response regulator TctD
D GEM_0601 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D GEM_4344 levansucrase K00692 sacB; levansucrase [EC:2.4.1.10]
D GEM_0263 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D GEM_3969 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D GEM_1793 efflux transporter, RND family, MFP subunit K18094 mexX; membrane fusion protein, multidrug efflux system
D GEM_1792 RND efflux system, inner membrane transporter CmeB K18095 mexY; multidrug efflux pump
D GEM_4823 Citrate lyase beta chain K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D GEM_5865 citrate carrier protein K11616 maeN; malate:Na+ symporter
D GEM_5587 two-component regulatory system response regulator protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D GEM_5148 integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D GEM_5347 integral membrane sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D GEM_5350 periplasmic sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D GEM_0022 signal transduction response regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D GEM_5348 two component LuxR family transcriptional regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D GEM_3644 two component LuxR family transcriptional regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D GEM_0386 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D GEM_5147 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D GEM_3640 DNA-binding response regulator, LuxR family K07690 evgA; two-component system, NarL family, response regulator EvgA
D GEM_3857 Beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D GEM_0728 fatty acid desaturase K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45]
D GEM_0434 signal peptide protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D GEM_1788 pili assembly chaperone K07346 fimC; fimbrial chaperone protein
D GEM_0433 putative pili assembly chaperone transmembrane protein K07346 fimC; fimbrial chaperone protein
D GEM_0024 putative fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D GEM_0340 fimbrial usher protein K07347 fimD; outer membrane usher protein
D GEM_3862 Outer membrane usher protein K07347 fimD; outer membrane usher protein
D GEM_0432 putative outer membrane usher transmembrane protein K07347 fimD; outer membrane usher protein
D GEM_1916 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D GEM_4615 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D GEM_1913 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D GEM_4613 Flp pilus assembly CpaB K02279 cpaB; pilus assembly protein CpaB
D GEM_1912 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D GEM_4612 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D GEM_1911 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE
D GEM_4610 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE
D GEM_1910 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D GEM_4609 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D GEM_1909 type II secretion system protein K12510 tadB; tight adherence protein B
D GEM_4608 type II secretion system protein K12510 tadB; tight adherence protein B
D GEM_1908 type II secretion system protein K12511 tadC; tight adherence protein C
D GEM_4607 type II secretion system protein K12511 tadC; tight adherence protein C
D GEM_1907 Flp pilus assembly protein K27079 tadD; tight adherence protein D
D GEM_1905 membrane protein K27080 tadG; tight adherence protein G
D GEM_1419 PII uridylyl-transferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D GEM_1017 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D GEM_1280 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D GEM_1281 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D GEM_3563 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_1258 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_1279 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_0450 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_0313 multi-sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D GEM_0314 two component transcriptional regulator, Fis family K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D GEM_4289 short-chain fatty acid transporter K02106 atoE; short-chain fatty acids transporter
D GEM_4087 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4093 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0669 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1523 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1636 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4665 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0562 histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D GEM_5864 periplasmic sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D GEM_0563 two component sigma54 specific Fis family transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D GEM_5863 two component, sigma54 specific, Fis family transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D GEM_0561 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D GEM_5110 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D GEM_2875 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D GEM_0650 DNA-directed RNA polymerase specialized sigma subunit K03092 rpoN; RNA polymerase sigma-54 factor
D GEM_0791 general secretion pathway protein H K02650 pilA; type IV pilus assembly protein PilA
D GEM_0167 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D GEM_3645 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D GEM_1985 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D GEM_0605 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D GEM_5021 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D GEM_4255 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D GEM_4158 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D GEM_0166 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_5712 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_5120 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_3812 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_1810 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_5843 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D GEM_5844 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D GEM_0165 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GEM_0164 CheW-like protein:ATP-binding region K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GEM_4548 putative CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GEM_0161 chemotaxis two-component response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GEM_0170 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GEM_4544 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GEM_0169 chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D GEM_4977 MCP methyltransferase, CheR-type K13486 wspC; chemotaxis protein methyltransferase WspC
D GEM_4979 methyl-accepting chemotaxis sensory transducer K13487 wspA; methyl-accepting chemotaxis protein WspA
D GEM_4978 CheW protein K13488 wspB; chemotaxis-related protein WspB
D GEM_4976 CheW protein K13489 wspD; chemotaxis-related protein WspD
D GEM_4975 CheA signal transduction histidine kinase K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE
D GEM_4974 chemotaxis-specific methylesterase K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61]
D GEM_4581 chemotaxis-specific methylesterase K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61]
D GEM_4582 response regulator receiver modulated diguanylate cyclase K11444 wspR; two-component system, chemotaxis family, response regulator WspR [EC:2.7.7.65]
D GEM_2849 polar amino acid transporter ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D GEM_4767 glutamate/aspartate ABC transporter, ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D GEM_2850 polar amino acid ABC transporter inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D GEM_2851 polar amino acid ABC transporter inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D GEM_2852 extracellular solute-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D GEM_1249 extracellular solute-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D GEM_0889 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D GEM_3419 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D GEM_5181 enoyl-CoA hydratase K13816 rpfF; DSF synthase
D GEM_3501 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D GEM_0347 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D GEM_0348 response regulator receiver protein K15012 regA; two-component system, response regulator RegA
D GEM_3081 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D GEM_3080 cytochrome b/b6 domain-containing protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D GEM_3079 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D GEM_0965 class I cytochrome c K08738 CYC; cytochrome c
D GEM_0200 cytochrome c, class I K08738 CYC; cytochrome c
D GEM_4957 ubiquinol oxidase subunit I, cyanide insensitive K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D GEM_0622 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D GEM_5727 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D GEM_4958 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D GEM_0621 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D GEM_5726 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D GEM_1691 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D GEM_0620 Cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D GEM_0031 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D GEM_3753 outer membrane efflux protein K12340 tolC; outer membrane protein
D GEM_4926 Polysaccharide export lipoprotein Wza K01991 wza; polysaccharide biosynthesis/export protein
D GEM_4421 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D GEM_4927 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D GEM_1300 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D GEM_4925 protein-tyrosine kinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GEM_4420 hypothetical protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GEM_2754 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D GEM_5019 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D GEM_2753 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D GEM_3749 autoinducer synthesis protein K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184]
D GEM_3751 LuxR family transcriptional regulator K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D GEM_2069 sigma-24 FecI-like protein K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D GEM_2068 FecR protein K07165 fecR; transmembrane sensor
D GEM_0415 putative anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D GEM_3081 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:bct02024]
D GEM_1902 RNA-binding protein Hfq / domain of unknown function K03666 hfq; host factor-I protein
D GEM_1619 Small nuclear ribonucleoprotein (Sm protein) K03666 hfq; host factor-I protein
D GEM_2991 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D GEM_2992 anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D GEM_3749 autoinducer synthesis protein K13061 rhlI; acyl homoserine lactone synthase [EC:2.3.1.184]
D GEM_3345 alpha/beta hydrolase fold protein K18100 rhlA; rhamnosyltransferase subunit A [EC:2.4.1.-]
D GEM_3347 glycosyl transferase family 28 K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-]
D GEM_3349 rhamnosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D GEM_2786 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D GEM_5656 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D GEM_0157 transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D GEM_0158 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D GEM_5040 two component transcriptional regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D GEM_1127 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D GEM_1802 spermidine/putrescine ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_4561 polyamine ABC transporter, periplasmic polyamine-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_5135 Extracellular solute-binding protein, family 4 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_1725 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_4715 spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_4731 polyamine ABC transporter periplasmic polyamine-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_2256 extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_3981 hypothetical protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_4834 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_4559 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_5131 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_1722 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_4705 PotC protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_4730 binding-protein-dependent transport system inner membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_4832 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_2257 putative ABC transporter membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_2258 binding-protein-dependent transport system inner membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_4560 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D GEM_5130 binding-protein-dependent transport system inner membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D GEM_4706 binding-protein-dependent transport system inner membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D GEM_4729 binding-protein-dependent transport system inner membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D GEM_4833 Spermidine Putrescine ABC transporter permease component PotB K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D GEM_1723 binding-protein-dependent transport system inner membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D GEM_4562 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_5129 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_4728 spermidine/putrescine ABC transporter ATPase K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_4835 spermidine/putrescine ABC transporter ATPase K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_2259 ABC transporter-like protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_4707 spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_1724 ABC transporter-like protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_0080 ABC branched-chain amino acid family transporter, periplasmic ligand binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0084 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0951 branched-chain amino acid transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_5388 putative periplasmic solute-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_2348 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0109 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_4521 branched chain amino acid ABC transporter periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0187 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_3709 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_1155 branched chain amino acid ABC transporter periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_3823 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_3423 putative amino acid ABC transporter solute binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_5222 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_5889 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_4273 branched chain amino acid ABC transporter periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_4668 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0081 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_0085 High-affinity branched-chain amino acid transport system permease protein LivH K01997 livH; branched-chain amino acid transport system permease protein
D GEM_0933 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_2016 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_4662 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_3822 ABC transporter permease protein K01997 livH; branched-chain amino acid transport system permease protein
D GEM_3424 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_0086 branched chain amino acid ABC transporter ATPase/inner membrane protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_3821 ABC transporter ATP-binding/permease protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_0082 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D GEM_0934 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D GEM_2015 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D GEM_4661 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D GEM_3425 leucine/isoleucine/valine transporter permease subunit K01998 livM; branched-chain amino acid transport system permease protein
D GEM_0078 ABC transporter-like protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_0935 ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_2014 ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_4664 ABC transporter-like protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_3426 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_0079 branched chain amino acid ABC transporter ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_0936 ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_0087 ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_2013 ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_4663 ABC transporter-like protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_3427 branched chain amino acid ABC transporter ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_3751 LuxR family transcriptional regulator K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D GEM_5181 enoyl-CoA hydratase K13816 rpfF; DSF synthase
D GEM_5182 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K14051 gmr; c-di-GMP phosphodiesterase Gmr [EC:3.1.4.52]
D GEM_5384 Fucose-binding lectin II K20277 bcl; mannose-binding lectin
D GEM_5383 Fucose-binding lectin II K20277 bcl; mannose-binding lectin
D GEM_1899 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_2236 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_2971 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_0871 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_5357 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_0889 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D GEM_3419 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D GEM_0834 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D GEM_2317 regulatory protein K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis
D GEM_3738 LuxR family transcriptional regulator K20330 toxJ; LuxR family transcriptional regulator, activator of tox operons
D GEM_3746 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D GEM_2570 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D GEM_1791 RND efflux system outer membrane lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D GEM_0826 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D GEM_4857 RND efflux system, outer membrane lipoprotein, NodT K18139 oprM; outer membrane protein, multidrug efflux system
D GEM_5678 putative periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D GEM_5679 putative oligopeptide transporter permease K15581 oppB; oligopeptide transport system permease protein
D GEM_5680 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D GEM_5681 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D GEM_5682 oligopeptide/dipeptide ABC transporter ATPase K10823 oppF; oligopeptide transport system ATP-binding protein
D GEM_3869 extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D GEM_3868 binding-protein-dependent transport system inner membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D GEM_3867 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D GEM_3866 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D GEM_3865 ABC transporter related protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D GEM_0266 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GEM_3897 peptidase S8/S53 subtilisin kexin sedolisin K14645 K14645; serine protease [EC:3.4.21.-]
D GEM_3187 Preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D GEM_1160 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D GEM_3153 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D GEM_2806 YajC protein K03210 yajC; preprotein translocase subunit YajC
D GEM_2950 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D GEM_0630 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D GEM_0585 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D GEM_2929 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D GEM_2347 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_0283 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_4286 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_0485 phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:bct02030]
D GEM_3645 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D GEM_1985 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D GEM_0605 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D GEM_5021 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D GEM_4255 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D GEM_4158 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D GEM_0166 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_5712 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_5120 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_3812 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_1810 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_5843 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D GEM_5844 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D GEM_1892 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D GEM_3410 ABC sugar transporter, periplasmic ligand binding protein K10439 rbsB; ribose transport system substrate-binding protein
D GEM_1815 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D GEM_0397 extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D GEM_0514 extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D GEM_4622 extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D GEM_0164 CheW-like protein:ATP-binding region K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GEM_4548 putative CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GEM_0165 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GEM_0161 chemotaxis two-component response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GEM_0170 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GEM_4544 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GEM_5575 chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC
D GEM_0171 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ
D GEM_0169 chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D GEM_0168 chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D GEM_0167 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D GEM_0376 Flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG
D GEM_0038 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D GEM_0037 Type III secretion system outer membrane O protein K02417 fliN; flagellar motor switch protein FliN
D GEM_0159 flagellar motor component-like protein K02556 motA; chemotaxis protein MotA
D GEM_5023 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D GEM_0160 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D GEM_5022 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:bct02040]
D GEM_0378 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D GEM_0377 flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF
D GEM_0376 Flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG
D GEM_0375 flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH
D GEM_0374 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D GEM_0373 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D GEM_0372 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D GEM_0039 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D GEM_0038 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D GEM_0037 Type III secretion system outer membrane O protein K02417 fliN; flagellar motor switch protein FliN
D GEM_0036 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D GEM_0035 flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D GEM_0034 flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D GEM_0033 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D GEM_0177 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D GEM_0176 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D GEM_0416 flagellar basal body P-ring biosynthesis protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D GEM_0417 flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D GEM_0418 flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D GEM_0419 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D GEM_0420 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D GEM_0421 flagellar basal body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D GEM_0422 flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D GEM_0423 flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D GEM_0424 flagellar basal body P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D GEM_0425 Flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D GEM_0427 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D GEM_0428 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D GEM_0148 flagellin K02406 fliC; flagellin
D GEM_0147 Flagellar capping protein K02407 fliD; flagellar hook-associated protein 2
D GEM_0379 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D GEM_0380 hypothetical protein K02423 fliT; flagellar protein FliT
D GEM_0146 hypothetical protein K02423 fliT; flagellar protein FliT
D GEM_0159 flagellar motor component-like protein K02556 motA; chemotaxis protein MotA
D GEM_5023 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D GEM_0160 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D GEM_5022 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D GEM_0415 putative anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D GEM_0414 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D GEM_3595 Cystine ABC transporter, periplasmic cystine-binding protein FliY K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_1877 extracellular solute-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_0293 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_3050 extracellular solute-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_4769 extracellular solute-binding protein, family 3 K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_4484 RpoD family RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D GEM_4864 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D GEM_0157 transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D GEM_0158 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D GEM_0650 DNA-directed RNA polymerase specialized sigma subunit K03092 rpoN; RNA polymerase sigma-54 factor
D GEM_0180 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D GEM_1321 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:bct04980]
D GEM_2790 atp:cobalamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D GEM_0520 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D GEM_0521 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:bct01501]
D GEM_4567 porin Gram-negative type K08720 ompU; outer membrane protein OmpU
D GEM_3374 porin K08720 ompU; outer membrane protein OmpU
D GEM_0333 major facilitator transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D GEM_2380 Beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D GEM_3510 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D GEM_3857 Beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D GEM_5678 putative periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D GEM_5679 putative oligopeptide transporter permease K15581 oppB; oligopeptide transport system permease protein
D GEM_5680 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D GEM_5681 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D GEM_5682 oligopeptide/dipeptide ABC transporter ATPase K10823 oppF; oligopeptide transport system ATP-binding protein
D GEM_3511 Beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D GEM_1794 TetR family transcriptional regulator K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor
D GEM_1793 efflux transporter, RND family, MFP subunit K18094 mexX; membrane fusion protein, multidrug efflux system
D GEM_1792 RND efflux system, inner membrane transporter CmeB K18095 mexY; multidrug efflux pump
D GEM_0824 secretion protein HlyD K03585 acrA; membrane fusion protein, multidrug efflux system
D GEM_0825 RND family efflux system transporter protein K18138 acrB; multidrug efflux pump
D GEM_1791 RND efflux system outer membrane lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D GEM_0826 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D GEM_4857 RND efflux system, outer membrane lipoprotein, NodT K18139 oprM; outer membrane protein, multidrug efflux system
D GEM_5474 histidine kinase K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3]
D GEM_5473 two component transcriptional regulator K18144 adeR; two-component system, OmpR family, response regulator AdeR
D GEM_4858 two-component regulatory system response regulator protein K18144 adeR; two-component system, OmpR family, response regulator AdeR
D GEM_4855 multidrug efflux system transport protein K18145 adeA; membrane fusion protein, multidrug efflux system
D GEM_4856 hydrophobe/amphiphile efflux-1 (HAE1) family protein K18146 adeB; multidrug efflux pump
D GEM_0031 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D GEM_3753 outer membrane efflux protein K12340 tolC; outer membrane protein
D GEM_3134 1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_1476 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_3221 Peptidoglycan glycosyltransferase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_4271 Peptidoglycan glycosyltransferase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_5759 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_0322 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D GEM_2965 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GEM_4393 peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GEM_5327 Beta-lactamase K17838 oxa; beta-lactamase class D [EC:3.5.2.6]
C 01502 Vancomycin resistance [PATH:bct01502]
D GEM_2957 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D GEM_1402 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D GEM_4542 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D GEM_2963 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D GEM_2962 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D GEM_2959 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:bct01503]
D GEM_1564 glycosyl transferase family protein K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D GEM_1561 polysaccharide deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D GEM_3567 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GEM_0866 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GEM_0817 peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D GEM_2389 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D GEM_3944 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107]
D GEM_0516 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D GEM_1349 cyclophilin type peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D GEM_0824 secretion protein HlyD K03585 acrA; membrane fusion protein, multidrug efflux system
D GEM_0825 RND family efflux system transporter protein K18138 acrB; multidrug efflux pump
D GEM_0031 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D GEM_3753 outer membrane efflux protein K12340 tolC; outer membrane protein
D GEM_1433 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D GEM_3969 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:bct01000]
C 01001 Protein kinases [BR:bct01001]
D GEM_4234 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D GEM_4925 protein-tyrosine kinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GEM_4420 hypothetical protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GEM_2148 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D GEM_1485 periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D GEM_1029 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D GEM_3663 periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D GEM_4335 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D GEM_5280 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D GEM_5041 periplasmic sensor signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D GEM_1126 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D GEM_0018 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D GEM_5155 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D GEM_4372 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D GEM_5474 histidine kinase K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3]
D GEM_2092 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D GEM_3503 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D GEM_0816 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D GEM_5148 integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D GEM_5347 integral membrane sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D GEM_5350 periplasmic sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D GEM_2303 putative two-component sensor histidine kinase transcription regulator protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D GEM_5588 integral membrane sensor signal transduction histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D GEM_1280 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D GEM_0313 multi-sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D GEM_0562 histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D GEM_5864 periplasmic sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D GEM_0164 CheW-like protein:ATP-binding region K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GEM_4548 putative CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GEM_4975 CheA signal transduction histidine kinase K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE
D GEM_0347 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:bct01009]
D GEM_0181 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D GEM_1061 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D GEM_1644 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:bct01002]
D GEM_0917 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D GEM_2944 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D GEM_1915 peptidase A24A, prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D GEM_4614 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D GEM_0066 glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D GEM_1451 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D GEM_2252 putative amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D GEM_1257 peptidase C26 K07010 K07010; putative glutamine amidotransferase
D GEM_0451 peptidase K07010 K07010; putative glutamine amidotransferase
D GEM_0029 ABC transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D GEM_4796 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D GEM_3119 glutamate synthase (NADH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D GEM_0617 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_4516 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_5016 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_5238 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_0459 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D GEM_3618 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D GEM_5292 peptidase C45, acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase K19200 IAL; isopenicillin-N N-acyltransferase like protein
D GEM_5453 chaperone protein HchA K05523 hchA; D-lactate dehydratase / protein deglycase [EC:4.2.1.130 3.5.1.124]
D GEM_0699 intracellular family K05520 yhbO; deglycase [EC:3.5.1.124]
D GEM_0778 ThiJ/PfpI domain protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103]
D GEM_3934 abortive infection protein K07052 K07052; CAAX protease family protein
D GEM_2505 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D GEM_3030 peptidase M1 membrane alanine aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D GEM_1287 Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D GEM_3033 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D GEM_0962 PepA protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D GEM_3360 putative dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D GEM_5218 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D GEM_1409 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D GEM_1765 amidohydrolase K01451 hipO; hippurate hydrolase [EC:3.5.1.32]
D GEM_5838 amidohydrolase K01451 hipO; hippurate hydrolase [EC:3.5.1.32]
D GEM_3910 amidohydrolase K01451 hipO; hippurate hydrolase [EC:3.5.1.32]
D GEM_1420 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D GEM_2364 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D GEM_2828 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D GEM_0413 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D GEM_3011 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D GEM_4155 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D GEM_2157 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D GEM_2443 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D GEM_0310 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D GEM_0686 peptidase M48 Ste24p K07387 K07387; metalloprotease [EC:3.4.24.-]
D GEM_0796 peptidase M48 Ste24p K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D GEM_1428 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D GEM_4449 peptidase M55 D-aminopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-]
D GEM_1592 hypothetical protein K09933 mtfA; MtfA peptidase
D GEM_4450 peptidase S58 DmpA K01266 dmpA; D-aminopeptidase [EC:3.4.11.19]
D GEM_4298 peptidase S58 DmpA K01266 dmpA; D-aminopeptidase [EC:3.4.11.19]
D GEM_0817 peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D GEM_2389 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D GEM_3944 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107]
D GEM_3083 Outer membrane stress sensor protease DegQ,serine protease K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D GEM_3897 peptidase S8/S53 subtilisin kexin sedolisin K14645 K14645; serine protease [EC:3.4.21.-]
D GEM_1282 peptidase S9 prolyl oligopeptidase active site domain protein K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D GEM_0543 penicillin-binding protein 6 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D GEM_3883 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D GEM_1295 murein-DD-endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D GEM_0814 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D GEM_1502 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D GEM_3317 Xaa-Pro dipeptidyl-peptidase K01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11]
D GEM_1504 Lon-A peptidase K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D GEM_0393 AAA ATPase central domain protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D GEM_1821 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D GEM_2386 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D GEM_4501 prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D GEM_2462 alpha/beta hydrolase fold protein K01054 MGLL; acylglycerol lipase [EC:3.1.1.23]
D GEM_0581 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D GEM_2404 peptidase S49 K04773 sppA; protease IV [EC:3.4.21.-]
D GEM_4830 Peptidase S53 propeptide K05998 E3.4.21.100; pseudomonalisin [EC:3.4.21.100]
D GEM_4861 Peptidase S53 propeptide K05998 E3.4.21.100; pseudomonalisin [EC:3.4.21.100]
D GEM_2636 Peptidase S53 propeptide K05998 E3.4.21.100; pseudomonalisin [EC:3.4.21.100]
D GEM_3200 peptidase S53 propeptide K08677 kscP; kumamolisin [EC:3.4.21.123]
D GEM_1457 Muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D GEM_0351 20S proteasome A and B subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D GEM_4455 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D GEM_4437 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_3719 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_0553 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_0764 putative gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D GEM_2439 peptidase U62 modulator of DNA gyrase K03592 pmbA; PmbA protein
D GEM_2785 putative DNA gyrase control protein K03568 tldD; TldD protein
D GEM_1042 ecotin K08276 eco; ecotin
D GEM_3903 alpha-2-macroglobulin domain-containing protein K06894 yfhM; alpha-2-macroglobulin
D GEM_1622 HflC protein K04087 hflC; modulator of FtsH protease HflC
D GEM_1621 HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:bct01003]
D GEM_2343 glycosyl transferase family protein K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D GEM_3291 Acyl-CoA dehydrogenase-like protein K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D GEM_1140 glycosyl transferase group 1 K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-]
D GEM_2044 cellulose synthase catalytic subunit (UDP-forming) K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D GEM_2908 MtgA protein K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D GEM_3902 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D GEM_3134 1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_1476 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_3221 Peptidoglycan glycosyltransferase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_4271 Peptidoglycan glycosyltransferase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_5759 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_3345 alpha/beta hydrolase fold protein K18100 rhlA; rhamnosyltransferase subunit A [EC:2.4.1.-]
D GEM_3347 glycosyl transferase family 28 K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-]
D GEM_4344 levansucrase K00692 sacB; levansucrase [EC:2.4.1.10]
D GEM_4514 N-glycosyltransferase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D GEM_5049 glycosyl transferase family protein K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173]
D GEM_1036 alpha,alpha-trehalose-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D GEM_2355 alpha,alpha-trehalose-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D GEM_4157 Alpha-trehalose-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:bct01005]
D GEM_1433 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D GEM_1434 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D GEM_2742 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D GEM_2952 UDP-3-O-3-(hydroxymyristoyl) N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D GEM_1431 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D GEM_1347 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D GEM_0885 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D GEM_0359 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D GEM_2627 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D GEM_0625 signal peptide protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D GEM_1320 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D GEM_0883 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D GEM_0654 putative 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D GEM_0655 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D GEM_2468 rfaE bifunctional protein K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D GEM_0530 rfaE bifunctional protein K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D GEM_2540 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D GEM_2629 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D GEM_0800 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D GEM_1096 O-antigen polymerase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D GEM_1095 glycosyl transferase family 9 K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D GEM_0198 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D GEM_0743 Histidinol phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D GEM_2647 cytidyltransferase-related domain protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D GEM_2467 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D GEM_3349 rhamnosyltransferase K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-]
D GEM_4602 Ribonuclease III K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:bct01011]
D GEM_4238 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D GEM_3099 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D GEM_0875 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D GEM_2958 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D GEM_2961 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D GEM_2964 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D GEM_2957 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D GEM_1402 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D GEM_4542 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D GEM_1219 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D GEM_1262 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D GEM_1457 Muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D GEM_2962 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D GEM_2959 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D GEM_2134 UppP protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GEM_2607 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GEM_5547 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D GEM_0879 virulence factor MVIN-like protein K03980 murJ; putative peptidoglycan lipid II flippase
D GEM_3134 1A family penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_1476 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_3221 Peptidoglycan glycosyltransferase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_4271 Peptidoglycan glycosyltransferase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_5759 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D GEM_3902 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D GEM_0322 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D GEM_2965 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GEM_4393 peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GEM_0543 penicillin-binding protein 6 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D GEM_0814 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D GEM_3883 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D GEM_1295 murein-DD-endopeptidase K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D GEM_2908 MtgA protein K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D GEM_3033 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D GEM_0408 Lytic transglycosylase catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D GEM_2986 MltA domain-containing protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D GEM_2464 lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D GEM_2166 putative exported transglycosylase protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D GEM_1531 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D GEM_0195 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D GEM_3567 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GEM_0866 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GEM_1882 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GEM_2926 N-acetyl-anhydromuranmyl-L-alanine amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:bct01004]
D GEM_2397 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GEM_2180 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D GEM_2398 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D GEM_0675 3-oxoacyl-ACP synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D GEM_2394 3-oxoacyl-(acyl carrier protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D GEM_4091 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_1011 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_0683 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_2396 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_3660 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_1118 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_2012 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_4103 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_5772 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_4971 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D GEM_1432 (3R)-hydroxymyristoyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D GEM_5745 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D GEM_1508 Lysophospholipase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D GEM_0731 thioesterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D GEM_0923 stearoyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D GEM_0728 fatty acid desaturase K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45]
D GEM_1224 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_2137 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_3469 putative AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D GEM_5816 PrpE protein K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D GEM_3544 acetoacetyl-coenzyme A synthetase AcsA K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D GEM_4565 CoA-binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13]
D GEM_1899 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_2236 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_2971 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_0871 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_5357 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_0103 AMP-binding domain-containing K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D GEM_5078 AMP-binding domain-containing protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D GEM_4969 Long-chain-fatty-acid--CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D GEM_2399 glycerol-3-phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D GEM_0873 putative glycerol-3-phosphate acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D GEM_2657 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D GEM_0742 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:bct01008]
D GEM_1783 MbtH domain protein K05375 mbtH; MbtH protein
D GEM_4526 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D GEM_2251 aspartate racemase protein K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:bct01006]
D GEM_4872 Polyprenyl synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D GEM_2939 trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D GEM_1425 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D GEM_4358 Squalene/phytoene synthase K00801 FDFT1; farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
D GEM_1490 squalene synthase HpnD K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D GEM_2763 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D GEM_2798 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D GEM_0602 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:bct01007]
D GEM_1378 GltX protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GEM_2025 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D GEM_1091 glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D GEM_2840 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GEM_1331 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D GEM_1351 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D GEM_0518 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GEM_0994 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D GEM_0918 Isoleucyl-tRNA synthetase, class Ia K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D GEM_1989 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D GEM_2867 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GEM_1310 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D GEM_0716 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GEM_1615 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D GEM_0745 glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D GEM_0744 glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D GEM_2552 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D GEM_2932 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D GEM_1957 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D GEM_2021 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D GEM_1953 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D GEM_1952 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D GEM_1569 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D GEM_1205 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_1265 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_4282 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D GEM_1186 aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D GEM_0113 aminotransferase class I and II K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D GEM_4550 aminotransferase class I and II K12252 aruH; arginine:pyruvate transaminase [EC:2.6.1.84]
D GEM_1412 succinyldiaminopimelate transaminase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D GEM_0634 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GEM_3096 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D GEM_5561 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D GEM_0505 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D GEM_2741 Glycine C-acetyltransferase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D GEM_4752 aminotransferase, class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GEM_5803 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D GEM_4311 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D GEM_0939 ArgD protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D GEM_2334 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D GEM_5847 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D GEM_0449 putative aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D GEM_1259 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D GEM_3683 hypothetical protein K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D GEM_0506 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D GEM_3432 aminotransferase K00596 E4.1.1.64; 2,2-dialkylglycine decarboxylase (pyruvate) [EC:4.1.1.64]
D GEM_5635 aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D GEM_2569 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D GEM_0544 class IV aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D GEM_0802 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D GEM_2771 Chorismate binding-like protein K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D GEM_5896 2-aminoethylphosphonate:pyruvate aminotransferase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D GEM_4497 aminotransferase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D GEM_0286 2-aminoethylphosphonate--pyruvate transaminase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D GEM_2478 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:bct00194]
D GEM_5407 ferredoxin K02639 petF; ferredoxin
D GEM_0102 AtpC protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D GEM_3605 ATP synthase F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D GEM_0101 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D GEM_0100 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D GEM_3606 ATP synthase F1 subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D GEM_4899 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D GEM_0099 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D GEM_0098 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D GEM_0097 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D GEM_0096 ATP synthase C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D GEM_0095 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D GEM_0094 F0F1-type ATP synthase subunit I-like protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:bct03000]
D GEM_0128 transcriptional regulator, AraC family K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D GEM_5268 transcriptional regulator, AraC family K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D GEM_3379 transcriptional regulator, AraC family K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D GEM_5542 AraC family transcriptional regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D GEM_2737 transcriptional regulator, AraC family K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D GEM_0119 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D GEM_5815 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D GEM_2700 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D GEM_5421 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D GEM_0277 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D GEM_5233 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GEM_3525 transcriptional activator FtrA K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
D GEM_3378 AraC family transcriptional regulator K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D GEM_2335 AraC family transcriptional regulator K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D GEM_3358 transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D GEM_3281 AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D GEM_0546 DNA-binding transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_3353 LysR family regulatory protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_3858 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_4738 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_3006 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_4754 hypothetical protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_0436 DNA-binding transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_1246 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_0487 transcriptional regulator, LysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_3284 regulatory protein, LysR K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_3371 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_1805 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_4522 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_4540 LysR family regulatory protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_3701 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_4656 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D GEM_4443 transcriptional regulator, LysR family K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D GEM_3193 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D GEM_4745 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D GEM_2196 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D GEM_2802 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D GEM_5538 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D GEM_5730 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D GEM_5321 Cyn operon transcriptional activator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D GEM_5435 DNA-binding transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D GEM_2877 transcriptional regulator, LysR family K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D GEM_0952 transcriptional regulator CysB-like protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D GEM_1816 transcriptional regulator CysB-like protein K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D GEM_3487 D-serine deaminase transcriptional activator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D GEM_3733 LysR family transcriptional regulator K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D GEM_3911 transcriptional regulator, LysR family K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D GEM_5768 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D GEM_5375 Galactose-binding protein regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D GEM_5554 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D GEM_4197 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D GEM_5065 transcriptional regulator, LysR family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D GEM_5112 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D GEM_3510 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D GEM_5854 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D GEM_3850 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D GEM_5114 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D GEM_0780 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D GEM_2594 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D GEM_4509 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D GEM_2854 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D GEM_4312 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D GEM_5297 transcriptional regulator, LysR family K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D GEM_5423 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D GEM_4992 transcriptional regulator, LysR family K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D GEM_5055 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D GEM_0763 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D GEM_3205 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D GEM_1812 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GEM_1971 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GEM_4343 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GEM_5231 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GEM_1683 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D GEM_3435 lacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D GEM_5048 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D GEM_5653 transcriptional regulator, histidine utilization repressor, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D GEM_1251 transcriptional regulator, histidine utilization repressor, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D GEM_0898 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D GEM_0615 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D GEM_4821 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D GEM_4970 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D GEM_2876 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D GEM_0691 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D GEM_2349 regulatory protein, GntR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D GEM_3299 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D GEM_3412 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D GEM_5595 DNA-binding transcriptional regulator GlcC K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D GEM_5848 GntR-type transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D GEM_5378 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D GEM_3222 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D GEM_4348 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D GEM_3939 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D GEM_4836 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D GEM_2098 GntR protein K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D GEM_3344 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D GEM_4710 putative transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D GEM_4555 TetR family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D GEM_0823 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D GEM_0343 nucleoid occlusion protein K05501 slmA; TetR/AcrR family transcriptional regulator
D GEM_3723 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D GEM_5050 transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D GEM_3328 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D GEM_4226 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D GEM_5743 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D GEM_5786 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D GEM_5798 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D GEM_1794 TetR family transcriptional regulator K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor
D GEM_4851 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D GEM_0477 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_0233 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_2455 regulatory proteins AsnC/Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_4325 transcriptional regulator, AsnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_5138 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_4126 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_0074 AnsC family regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_5626 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_1264 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_3198 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_4284 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_0854 AnsC family regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_5237 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_5341 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_2283 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D GEM_5366 AsnC family transcriptional regulator K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
D GEM_3751 LuxR family transcriptional regulator K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR
D GEM_3738 LuxR family transcriptional regulator K20330 toxJ; LuxR family transcriptional regulator, activator of tox operons
D GEM_3546 ATP-dependent transcription regulator LuxR K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D GEM_1732 ATP-dependent transcription regulator LuxR K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D GEM_3254 transcriptional regulator, MarR family K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D GEM_4887 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D GEM_1706 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D GEM_1199 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D GEM_3724 MerR family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D GEM_1594 transcriptional regulator, MerR family K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
D GEM_2872 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D GEM_0834 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D GEM_4242 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D GEM_5840 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D GEM_1296 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D GEM_2317 regulatory protein K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis
D GEM_0889 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D GEM_3419 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D GEM_5537 Crp/FNR family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D GEM_4277 Crp/FNR family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D GEM_1301 transcriptional rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D GEM_1576 BadM/Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D GEM_2862 RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D GEM_0533 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D GEM_2831 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D GEM_5705 sigma-54 dependent transcription regulator K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D GEM_4177 transcriptional regulator, XRE family protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D GEM_4233 transcriptional regulator, XRE family K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D GEM_3693 putative transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D GEM_3711 signal-transduction and transcriptional-control protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D GEM_5806 Fis family GAF modulated sigma54 specific transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D GEM_3449 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D GEM_5085 GAF modulated Fis family sigma-54 specific transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D GEM_1582 Fis family GAF modulated sigma54 specific transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D GEM_5307 DNA-binding domain of ModE K02019 modE; molybdate transport system regulatory protein
D GEM_4895 transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D GEM_2684 YheO domain protein K21829 dauR; D-arginine utilization repressor
D GEM_0108 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D GEM_4704 bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D GEM_1516 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D GEM_4034 gp58 K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GEM_0092 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GEM_5567 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GEM_2779 heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D GEM_3743 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D GEM_2660 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D GEM_3054 hypothetical protein K07733 alpA; prophage regulatory protein
D GEM_3223 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator
D GEM_2662 hypothetical protein K07735 algH; putative transcriptional regulator
D GEM_0352 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D GEM_4401 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D GEM_2726 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D GEM_5067 regulator of RNA terminal phosphate cyclase K14414 rtcR; transcriptional regulatory protein RtcR
D GEM_2968 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:bct03021]
D GEM_4243 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D GEM_3147 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D GEM_3181 RpoB protein K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D GEM_3180 DNA-directed RNA polymerase subunit beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D GEM_2527 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D GEM_4484 RpoD family RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D GEM_4864 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D GEM_1606 RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D GEM_2392 RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GEM_0003 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GEM_0007 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GEM_1145 RNA polymerase factor sigma-70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GEM_2678 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GEM_5509 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GEM_5571 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GEM_3991 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GEM_1549 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D GEM_2069 sigma-24 FecI-like protein K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D GEM_0624 RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor
D GEM_0650 DNA-directed RNA polymerase specialized sigma subunit K03092 rpoN; RNA polymerase sigma-54 factor
D GEM_0180 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D GEM_1934 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D GEM_2575 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D GEM_3186 NusG protein K02601 nusG; transcription termination/antitermination protein NusG
D GEM_3078 glutathione S-transferase K03599 sspA; stringent starvation protein A
D GEM_3077 ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
D GEM_2391 Anti sigma-E protein RseA K03597 rseA; sigma-E factor negative regulatory protein RseA
D GEM_2390 sigma E regulatory protein, MucB/RseB K03598 rseB; sigma-E factor negative regulatory protein RseB
D GEM_0352 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D GEM_4401 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D GEM_2161 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D GEM_2522 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D GEM_1595 Rho protein K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:bct03019]
D GEM_2408 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D GEM_1109 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D GEM_2385 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D GEM_1884 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D GEM_2890 guanine-specific ribonuclease N1 and T1 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D GEM_2442 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D GEM_0767 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D GEM_5213 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D GEM_1090 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D GEM_3179 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D GEM_1321 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GEM_1157 polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D GEM_1595 Rho protein K03628 rho; transcription termination factor Rho
D GEM_2773 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D GEM_2666 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GEM_5191 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GEM_1902 RNA-binding protein Hfq / domain of unknown function K03666 hfq; host factor-I protein
D GEM_1619 Small nuclear ribonucleoprotein (Sm protein) K03666 hfq; host factor-I protein
D GEM_2147 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D GEM_4436 putative polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D GEM_2767 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D GEM_2933 dinucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D GEM_0646 putative p-loop atpase protein K06958 rapZ; RNase adapter protein RapZ
D GEM_1273 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:bct03011]
D GEM_2473 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D GEM_1421 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D GEM_3167 RpsC protein K02982 RP-S3; small subunit ribosomal protein S3
D GEM_3148 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D GEM_3156 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D GEM_1551 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D GEM_3177 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D GEM_3159 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D GEM_2843 RpsI protein K02996 RP-S9; small subunit ribosomal protein S9
D GEM_3174 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D GEM_3149 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D GEM_3178 RpsL protein K02950 RP-S12; small subunit ribosomal protein S12
D GEM_3150 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D GEM_3160 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D GEM_1156 RpsO protein K02956 RP-S15; small subunit ribosomal protein S15
D GEM_2451 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D GEM_3164 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D GEM_1553 RpsR protein K02963 RP-S18; small subunit ribosomal protein S18
D GEM_3169 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D GEM_0878 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D GEM_0149 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D GEM_4867 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D GEM_3184 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D GEM_3170 RplB protein K02886 RP-L2; large subunit ribosomal protein L2
D GEM_3173 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D GEM_3172 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D GEM_3161 RplE protein K02931 RP-L5; large subunit ribosomal protein L5
D GEM_3158 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D GEM_1554 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D GEM_3183 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D GEM_3185 RplK protein K02867 RP-L11; large subunit ribosomal protein L11
D GEM_3182 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D GEM_2844 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D GEM_3163 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D GEM_3154 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D GEM_3166 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D GEM_3146 RplQ protein K02879 RP-L17; large subunit ribosomal protein L17
D GEM_3157 RplR protein K02881 RP-L18; large subunit ribosomal protein L18
D GEM_2448 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D GEM_1954 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D GEM_2938 RplU protein K02888 RP-L21; large subunit ribosomal protein L21
D GEM_3168 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D GEM_3171 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D GEM_3162 RplX protein K02895 RP-L24; large subunit ribosomal protein L24
D GEM_2937 RpmA protein K02899 RP-L27; large subunit ribosomal protein L27
D GEM_0928 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D GEM_3165 RpmC protein K02904 RP-L29; large subunit ribosomal protein L29
D GEM_3155 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D GEM_1591 RpmE2 protein K02909 RP-L31; large subunit ribosomal protein L31
D GEM_2400 RpmF protein K02911 RP-L32; large subunit ribosomal protein L32
D GEM_0927 RpmG protein K02913 RP-L33; large subunit ribosomal protein L33
D GEM_0264 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D GEM_1955 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D GEM_3151 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D GEM_0636 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D GEM_0245 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GEM_3189 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GEM_2973 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GEM_1198 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GEM_0243 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GEM_1194 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GEM_0244 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GEM_1197 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:bct03009]
D GEM_2385 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D GEM_2442 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D GEM_2384 GTP-binding protein Era K03595 era; GTPase
D GEM_2936 GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D GEM_0352 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D GEM_4401 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D GEM_1934 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D GEM_2575 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D GEM_3186 NusG protein K02601 nusG; transcription termination/antitermination protein NusG
D GEM_0943 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D GEM_0738 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D GEM_0921 Fmu (Sun) domain-containing protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D GEM_0311 Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D GEM_0631 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D GEM_2888 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D GEM_0090 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D GEM_2967 MraW protein K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D GEM_2403 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D GEM_0196 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D GEM_1883 RNA methyltransferase TrmH, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D GEM_2158 Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D GEM_1111 rRNA large subunit methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D GEM_0354 PUA domain-containing protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D GEM_1202 protein involved in catabolism of external dna K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D GEM_2819 putative RNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D GEM_1612 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D GEM_1609 23S rRNA 5-methyluridine methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D GEM_1936 pseudouridine synthase, Rsu K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D GEM_2407 RluA family pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D GEM_1633 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D GEM_0905 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D GEM_1418 RNA-binding S4 domain-containing protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D GEM_1397 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D GEM_3900 GCN5-related N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D GEM_2450 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D GEM_1640 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D GEM_2918 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D GEM_1408 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D GEM_1336 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D GEM_2408 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D GEM_1109 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D GEM_2661 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D GEM_5394 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D GEM_2444 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D GEM_1618 GTP-binding protein EngA K03977 engA; GTPase
D GEM_1620 small GTP-binding protein K03665 hflX; GTPase
D GEM_0811 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D GEM_2526 (p)ppGpp synthetase I SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D GEM_1932 RbfA protein K02834 rbfA; ribosome-binding factor A
D GEM_1935 ribosome maturation factor K09748 rimP; ribosome maturation factor RimP
D GEM_2428 hypothetical protein K14761 rlbA; ribosome-associated protein
D GEM_1112 Iojap-related protein K09710 ybeB; ribosome-associated protein
D GEM_0751 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
D GEM_2159 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein
D GEM_2440 hypothetical protein K09889 yjgA; ribosome-associated protein
D GEM_0649 sigma 54 modulation protein/30S ribosomal protein S30P K05808 hpf; ribosome hibernation promoting factor
D GEM_3001 GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase
D GEM_2401 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:bct03016]
D GEM_2890 guanine-specific ribonuclease N1 and T1 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D GEM_0411 Cca protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D GEM_5070 protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D GEM_1378 GltX protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GEM_2932 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D GEM_0918 Isoleucyl-tRNA synthetase, class Ia K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D GEM_2867 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GEM_0994 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D GEM_2025 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D GEM_0518 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GEM_1310 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D GEM_0716 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GEM_2021 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D GEM_1957 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D GEM_2552 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D GEM_1351 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D GEM_1989 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D GEM_1615 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D GEM_1953 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D GEM_1952 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D GEM_2840 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GEM_1331 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D GEM_2839 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D GEM_1133 threonyl/alanyl tRNA synthetase SAD K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
D GEM_5754 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D GEM_3087 Histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D GEM_2606 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D GEM_4805 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D GEM_1931 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D GEM_5260 class V aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GEM_1302 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GEM_0811 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D GEM_2763 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D GEM_0268 tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D GEM_0089 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D GEM_5850 selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D GEM_2530 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D GEM_2910 putative exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D GEM_3114 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D GEM_3008 ABC transporter K06020 ettA; energy-dependent translational throttle protein EttA
D GEM_0745 glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D GEM_0744 glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D GEM_1091 glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D GEM_1696 YbaK/prolyl-tRNA synthetase associated region K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D GEM_4138 YbaK/prolyl-tRNA synthetase associated region K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D GEM_1456 tRNA-adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D GEM_1861 TIM-barrel protein, yjbN family K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D GEM_2830 putative nitrogen regulation-related protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D GEM_0753 (dimethylallyl)adenosine tRNA methylthiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D GEM_4905 SAM-dependent methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D GEM_1345 RNA methyltransferase, TrmH family, group 1 K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D GEM_2449 tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D GEM_0588 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D GEM_1436 tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family
D GEM_2825 tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D GEM_0461 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D GEM_1996 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D GEM_1304 Iron binding protein IscA for iron-sulfur cluster assembly K13628 iscA; iron-sulfur cluster assembly protein
D GEM_1530 tRNA-modifying protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D GEM_0062 5-methylaminomethyl-2-thiouridine methyltransferase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D GEM_2804 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D GEM_0316 exoenzyme S synthesis protein B K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D GEM_0318 putative 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D GEM_0317 organic radical activating enzyme-like protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D GEM_0704 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D GEM_0868 iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D GEM_1829 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D GEM_2805 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D GEM_1354 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D GEM_1396 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D GEM_4869 DNA-binding/iron metalloprotein/AP endonuclease K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D GEM_0867 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D GEM_0862 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D GEM_1884 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D GEM_1157 polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D GEM_1768 PilT domain-containing protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:bct03012]
D GEM_1933 translation initiation factor 2 K02519 infB; translation initiation factor IF-2
D GEM_1956 translation initiation factor 3 K02520 infC; translation initiation factor IF-3
D GEM_1405 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D GEM_1422 elongation factor Ts K02357 tsf; elongation factor Ts
D GEM_3175 Tuf protein K02358 tuf; elongation factor Tu
D GEM_3176 FusA protein K02355 fusA; elongation factor G
D GEM_0903 elongation factor G K02355 fusA; elongation factor G
D GEM_4773 selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D GEM_3015 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D GEM_1424 Frr protein K02838 frr; ribosome recycling factor
D GEM_3016 protein-(glutamine-N5) methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D GEM_0635 Aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D GEM_3152 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D GEM_4098 Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D GEM_2378 elongation factor P K02356 efp; elongation factor P
D GEM_1311 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D GEM_2273 peptidyl-tRNA hydrolase domain-containing protein K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:bct03110]
D GEM_0912 ATP-dependent Clp protease ATP-binding protein ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D GEM_1577 ClpB protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D GEM_1503 ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D GEM_0350 HslU protein K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D GEM_1061 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D GEM_2773 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D GEM_1306 chaperone protein HscA K04044 hscA; molecular chaperone HscA
D GEM_3022 molecular chaperone-like protein K04046 yegD; hypothetical chaperone protein
D GEM_2666 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GEM_5191 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GEM_2772 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D GEM_1305 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB
D GEM_1324 Hsp33 protein K04083 hslO; molecular chaperone Hsp33
D GEM_2775 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D GEM_2192 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D GEM_2193 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D GEM_2777 RNA-binding S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D GEM_2667 Chaperonin Cpn10 K04078 groES; chaperonin GroES
D GEM_5190 co-chaperonin GroES K04078 groES; chaperonin GroES
D GEM_0817 peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D GEM_2389 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D GEM_3944 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107]
D GEM_4155 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D GEM_2157 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D GEM_0095 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D GEM_1788 pili assembly chaperone K07346 fimC; fimbrial chaperone protein
D GEM_0433 putative pili assembly chaperone transmembrane protein K07346 fimC; fimbrial chaperone protein
D GEM_0585 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D GEM_2358 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D GEM_3444 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D GEM_3897 peptidase S8/S53 subtilisin kexin sedolisin K14645 K14645; serine protease [EC:3.4.21.-]
D GEM_1349 cyclophilin type peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D GEM_1348 peptidyl-prolyl cis-trans isomerase cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D GEM_1507 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D GEM_4915 peptidylprolyl isomerase FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D GEM_0930 peptidylprolyl isomerase FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D GEM_1337 FKBP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D GEM_1515 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D GEM_0736 SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D GEM_5356 hypothetical protein K03671 TXN; thioredoxin
D GEM_1596 thioredoxin K03671 TXN; thioredoxin
D GEM_0863 thioredoxin K05838 ybbN; putative thioredoxin
D GEM_0584 glutaredoxin 3 K03676 grxC; glutaredoxin 3
D GEM_3017 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D GEM_0516 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D GEM_2499 disulfide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D GEM_2999 protein-disulfide isomerase-like protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D GEM_3479 Protein-disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D GEM_3144 protein-disulfide reductase K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:bct04131]
D GEM_1611 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D GEM_2503 transmembrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D GEM_2884 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GEM_0582 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D GEM_0806 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D GEM_1061 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:bct03051]
D GEM_1061 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:bct03032]
D GEM_2169 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D GEM_0061 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D GEM_3438 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D GEM_1951 IhfA protein K04764 ihfA; integration host factor subunit alpha
D GEM_2472 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D GEM_0263 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D GEM_1555 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D GEM_4865 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D GEM_0664 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GEM_1093 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GEM_0262 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GEM_0963 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D GEM_2865 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GEM_1533 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GEM_2518 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_5620 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_2170 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_1597 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GEM_1435 RnhB protein K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D GEM_4878 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GEM_1416 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D GEM_2765 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D GEM_2480 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D GEM_0261 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D GEM_1049 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D GEM_1048 DNA topoisomerase (ATP-hydrolyzing) K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D GEM_0304 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:bct03036]
D GEM_2385 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D GEM_0155 histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D GEM_0190 histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D GEM_3840 histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D GEM_5697 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D GEM_5795 histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D GEM_0061 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D GEM_3438 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D GEM_1951 IhfA protein K04764 ihfA; integration host factor subunit alpha
D GEM_2472 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D GEM_0263 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D GEM_2831 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D GEM_1902 RNA-binding protein Hfq / domain of unknown function K03666 hfq; host factor-I protein
D GEM_1619 Small nuclear ribonucleoprotein (Sm protein) K03666 hfq; host factor-I protein
D GEM_5538 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D GEM_5730 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D GEM_0477 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_0233 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_2455 regulatory proteins AsnC/Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_4325 transcriptional regulator, AsnC family protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_5138 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_4126 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_0074 AnsC family regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_5626 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_1264 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_3198 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_4284 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_0854 AnsC family regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_5237 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_5341 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GEM_1414 putative chromosome partition protein K03529 smc; chromosome segregation protein
D GEM_0989 condensin subunit ScpA K05896 scpA; segregation and condensation protein A
D GEM_1937 Segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D GEM_2955 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D GEM_1322 cell division protein FtsB K05589 ftsB; cell division protein FtsB
D GEM_2965 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GEM_4393 peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D GEM_1085 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D GEM_0255 DNA segregation ATPase, FtsK/SpoIIIE family K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D GEM_2556 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D GEM_2966 Cell division protein K03586 ftsL; cell division protein FtsL
D GEM_2956 polypeptide-transport-associated domain-containing protein K03589 ftsQ; cell division protein FtsQ
D GEM_2960 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D GEM_2954 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D GEM_0971 cell division protein K09888 zapA; cell division protein ZapA
D GEM_2946 cell division protein K18778 zapD; cell division protein ZapD
D GEM_1922 AFG1-family ATPase K06916 zapE; cell division protein ZapE
D GEM_3567 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GEM_0866 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D GEM_0824 secretion protein HlyD K03585 acrA; membrane fusion protein, multidrug efflux system
D GEM_2546 septum formation inhibitor K03610 minC; septum site-determining protein MinC
D GEM_2545 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D GEM_2544 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D GEM_0343 nucleoid occlusion protein K05501 slmA; TetR/AcrR family transcriptional regulator
D GEM_0324 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D GEM_3505 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D GEM_0323 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D GEM_0321 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D GEM_0091 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D GEM_0986 cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D GEM_0667 cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D GEM_5568 cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D GEM_4034 gp58 K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GEM_0092 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GEM_5567 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GEM_1049 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D GEM_1048 DNA topoisomerase (ATP-hydrolyzing) K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D GEM_0089 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D GEM_0090 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D GEM_0355 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D GEM_0870 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D GEM_0996 CobQ/CobB/MinD/ParA nucleotide binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D GEM_3142 ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:bct03400]
D GEM_0869 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D GEM_5234 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D GEM_1243 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D GEM_2996 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D GEM_0666 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D GEM_0644 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D GEM_1079 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D GEM_4243 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D GEM_2947 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GEM_1751 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GEM_4632 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GEM_0915 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D GEM_0277 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D GEM_0665 uracil-DNA glycosylase superfamily protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D GEM_1398 phage SPO1 DNA polymerase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D GEM_0278 alcohol dehydrogenase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GEM_1352 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GEM_5233 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D GEM_0150 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D GEM_0643 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D GEM_0329 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D GEM_1283 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D GEM_1312 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D GEM_1416 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D GEM_4878 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D GEM_0662 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D GEM_1206 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D GEM_2376 UvrC protein K03703 uvrC; excinuclease ABC subunit C
D GEM_1988 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D GEM_3181 RpoB protein K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D GEM_3180 DNA-directed RNA polymerase subunit beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D GEM_3147 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D GEM_2527 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D GEM_1480 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D GEM_1339 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D GEM_2762 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D GEM_0886 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D GEM_4873 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D GEM_1093 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D GEM_0262 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D GEM_0963 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D GEM_2865 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D GEM_1533 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D GEM_2518 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_5620 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_2170 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D GEM_1597 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D GEM_0664 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GEM_2275 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D GEM_2276 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D GEM_2274 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D GEM_0785 RecA protein K03553 recA; recombination protein RecA
D GEM_2834 Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
D GEM_2835 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D GEM_2833 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D GEM_0107 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D GEM_1552 primosomal replication protein N-like protein K02686 priB; primosomal replication protein N
D GEM_1403 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D GEM_2803 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D GEM_2383 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D GEM_1601 recombination protein RecR K06187 recR; recombination protein RecR
D GEM_2781 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D GEM_2480 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D GEM_0261 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D GEM_0061 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D GEM_3438 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D GEM_2831 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D GEM_1951 IhfA protein K04764 ihfA; integration host factor subunit alpha
D GEM_2472 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D GEM_3179 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D GEM_0155 histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D GEM_0190 histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D GEM_3840 histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D GEM_5697 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D GEM_5795 histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D GEM_1286 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D GEM_1821 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D GEM_5430 DNA polymerase B region K02336 polB; DNA polymerase II [EC:2.7.7.7]
D GEM_0612 hypothetical protein K14160 imuA; protein ImuA
D GEM_0613 hypothetical protein K14161 imuB; protein ImuB
D GEM_0614 DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D GEM_0786 RecX protein K03565 recX; regulatory protein
D GEM_4400 PHP domain protein K02347 polX; DNA polymerase (family X)
D GEM_0140 UvrD/REP helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D GEM_1631 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D GEM_4439 DEAD/DEAH box helicase domain-containing protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D GEM_2925 Ribonucleotide reductase of class Ia (aerobic),alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GEM_2924 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:bct03029]
D GEM_3080 cytochrome b/b6 domain-containing protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D GEM_1933 translation initiation factor 2 K02519 infB; translation initiation factor IF-2
D GEM_1956 translation initiation factor 3 K02520 infC; translation initiation factor IF-3
D GEM_1422 elongation factor Ts K02357 tsf; elongation factor Ts
D GEM_3175 Tuf protein K02358 tuf; elongation factor Tu
D GEM_3176 FusA protein K02355 fusA; elongation factor G
D GEM_0903 elongation factor G K02355 fusA; elongation factor G
D GEM_2384 GTP-binding protein Era K03595 era; GTPase
D GEM_2840 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D GEM_2867 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D GEM_0716 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D GEM_0518 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D GEM_0326 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D GEM_2498 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D GEM_0327 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D GEM_0325 aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D GEM_2126 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial
D GEM_0664 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GEM_1429 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D GEM_2773 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D GEM_2775 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D GEM_2666 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GEM_5191 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GEM_2667 Chaperonin Cpn10 K04078 groES; chaperonin GroES
D GEM_5190 co-chaperonin GroES K04078 groES; chaperonin GroES
D GEM_2772 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D GEM_5260 class V aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GEM_1302 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GEM_1305 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB
D GEM_3017 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D GEM_0996 CobQ/CobB/MinD/ParA nucleotide binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D GEM_0602 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D GEM_0595 cytochrome C oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D GEM_0601 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D GEM_0266 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GEM_0599 surf1 family protein K14998 SURF1; surfeit locus 1 family protein
D GEM_2302 sco1 family protein K07152 SCO1; protein SCO1
D GEM_0603 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D GEM_2357 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D GEM_1061 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:bct02000]
D GEM_1099 Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D GEM_0029 ABC transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D GEM_0732 ABC transporter-like protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D GEM_4952 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D GEM_2354 ABC transporter K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D GEM_5086 ABC transporter ATP-binding protein/permease K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D GEM_4539 cysteine ABC transporter permease/ATP-binding protein K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD
D GEM_3477 hypothetical protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D GEM_1777 cyclic peptide transporter K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein
D GEM_3113 ABC transporter K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D GEM_1047 ABC transporter K15738 uup; ABC transport system ATP-binding/permease protein
D GEM_0494 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D GEM_1820 sulfate ABC transporter periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D GEM_1819 Sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D GEM_1818 sulfate ABC transporter permease K02047 cysW; sulfate/thiosulfate transport system permease protein
D GEM_1817 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D GEM_4892 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D GEM_3387 putative molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein
D GEM_4893 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D GEM_4894 ABC-type sulfate/molybdate transport systems ATPase component K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D GEM_0550 taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D GEM_0552 Binding-protein-dependent transport systems inner membrane component K15552 tauC; taurine transport system permease protein
D GEM_0551 ABC transporter-like protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D GEM_1886 aliphatic sulfonates ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4624 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_3806 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4370 aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4616 nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4600 nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4163 ABC transporter K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_0021 putative transport protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_4366 NMT1/THI5-like domain-containing protein K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_5152 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein
D GEM_1866 binding-protein-dependent transport system inner membrane protein K15554 ssuC; sulfonate transport system permease protein
D GEM_4617 binding-protein-dependent transport system inner membrane protein K15554 ssuC; sulfonate transport system permease protein
D GEM_4618 nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein K15554 ssuC; sulfonate transport system permease protein
D GEM_4367 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D GEM_0019 binding-protein-dependent transport system inner membrane protein K15554 ssuC; sulfonate transport system permease protein
D GEM_4619 nitrate/sulfonate/bicarbonate ABC transporter ATPase K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D GEM_1865 ABC transporter-like protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D GEM_4368 ABC transporter-like protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D GEM_0020 nitrate/sulfonate/bicarbonate ABC transporter ATPase K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D GEM_2280 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D GEM_2671 ABC Fe3+ transporter, periplasmic ligand binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D GEM_0289 extracellular solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D GEM_4374 extracellular solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D GEM_2281 spermidine/putrescine ABC transporter inner membrane protein K02011 afuB; iron(III) transport system permease protein
D GEM_2672 Fe3+ ABC transporter inner membrane protein K02011 afuB; iron(III) transport system permease protein
D GEM_0287 Ferric iron ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D GEM_4375 ABC Fe3+ siderophore transporter, inner membrane subunit K02011 afuB; iron(III) transport system permease protein
D GEM_2282 ABC transporter-like protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D GEM_2673 ABC transporter ATPase K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D GEM_0288 spermidine/putrescine ABC transporter ATPase subuni K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D GEM_4376 ABC transporter, ATPase subunit K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D GEM_5294 ABC spermidine/putrescine transporter, periplasmic ligand binding protein K11073 potF; putrescine transport system substrate-binding protein
D GEM_1662 extracellular solute-binding protein K11073 potF; putrescine transport system substrate-binding protein
D GEM_0448 putrescine ABC transporter binding exported protein K11073 potF; putrescine transport system substrate-binding protein
D GEM_1665 spermidine/putrescine ABC transporter inner membrane protein K11074 potI; putrescine transport system permease protein
D GEM_0445 Ornithine carbamoyltransferase K11074 potI; putrescine transport system permease protein
D GEM_5315 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein
D GEM_1664 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein
D GEM_0446 Putrescine transport system permease protein PotH K11075 potH; putrescine transport system permease protein
D GEM_5316 spermidine/putrescine ABC transporter ATPase K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D GEM_1663 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D GEM_0447 spermidine/putrescine ABC transporter ATPase K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D GEM_1802 spermidine/putrescine ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_4561 polyamine ABC transporter, periplasmic polyamine-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_5135 Extracellular solute-binding protein, family 4 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_1725 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_4715 spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_4731 polyamine ABC transporter periplasmic polyamine-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_2256 extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_3981 hypothetical protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_4834 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D GEM_4559 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_5131 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_1722 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_4705 PotC protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_4730 binding-protein-dependent transport system inner membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_4832 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_2257 putative ABC transporter membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_2258 binding-protein-dependent transport system inner membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D GEM_4560 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D GEM_5130 binding-protein-dependent transport system inner membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D GEM_4706 binding-protein-dependent transport system inner membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D GEM_4729 binding-protein-dependent transport system inner membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D GEM_4833 Spermidine Putrescine ABC transporter permease component PotB K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D GEM_1723 binding-protein-dependent transport system inner membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D GEM_4562 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_5129 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_4728 spermidine/putrescine ABC transporter ATPase K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_4835 spermidine/putrescine ABC transporter ATPase K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_2259 ABC transporter-like protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_4707 spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_1724 ABC transporter-like protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D GEM_5897 2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein K11081 phnS; 2-aminoethylphosphonate transport system substrate-binding protein
D GEM_5900 ABC transporter, inner membrane subunit K11082 phnV; 2-aminoethylphosphonate transport system permease protein
D GEM_5899 ABC transporter, inner membrane subunit K11083 phnU; 2-aminoethylphosphonate transport system permease protein
D GEM_5898 ABC transporter ATP-binding protein K11084 phnT; 2-aminoethylphosphonate transport system ATP-binding protein
D GEM_3282 substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D GEM_3368 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D GEM_3373 substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D GEM_3395 choline ABC transporter, periplasmic binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D GEM_4716 choline ABC transporter, periplasmic binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D GEM_3280 putative glycine-betaine ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein
D GEM_3279 ABC glycine betaine/L-proline transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D GEM_3314 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D GEM_3311 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D GEM_3313 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D GEM_3312 ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D GEM_1031 nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D GEM_3716 binding-protein-dependent transport system inner membrane protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D GEM_1032 ABC transporter-like protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D GEM_3717 ABC transporter K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D GEM_0842 ABC transporter-like protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D GEM_2560 ABC transporter-like protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D GEM_2563 maltose-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein
D GEM_2562 Permease of ABC sugar transporter K17316 gtsB; glucose/mannose transport system permease protein
D GEM_2561 binding-protein-dependent transport systems inner membrane component K17317 gtsC; glucose/mannose transport system permease protein
D GEM_2901 Monosaccharide-transporting ATPase K10537 araF; L-arabinose transport system substrate-binding protein
D GEM_5609 L-arabinose-binding periplasmic protein AraF K10537 araF; L-arabinose transport system substrate-binding protein
D GEM_2899 L-arabinose transporter permease K10538 araH; L-arabinose transport system permease protein
D GEM_5611 ribose/xylose/arabinose/galactoside ABC-type transport system permease component K10538 araH; L-arabinose transport system permease protein
D GEM_2900 L-arabinose transport ATP-binding protein AraG K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D GEM_5610 ABC transporter related protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D GEM_1892 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D GEM_3410 ABC sugar transporter, periplasmic ligand binding protein K10439 rbsB; ribose transport system substrate-binding protein
D GEM_1815 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D GEM_1813 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D GEM_1891 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D GEM_3409 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D GEM_1814 ABC transporter K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D GEM_1890 ABC transporter K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D GEM_3408 ABC transporter-like protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D GEM_2006 Inositol transport system sugar-binding protein K17213 K17213; inositol transport system substrate-binding protein
D GEM_2004 monosaccharide-transporting ATPase K17214 K17214; inositol transport system permease protein
D GEM_2005 ABC transporter-like protein K17215 K17215; inositol transport system ATP-binding protein
D GEM_3126 extracellular solute-binding protein family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D GEM_3125 binding-protein-dependent transport system inner membrane protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D GEM_3124 glycerol-3-phosphate transporter membrane protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D GEM_3123 glycerol-3-phosphate transporter ATP-binding subunit K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D GEM_0838 sugar ABC transporter periplasmic substrate-binding protein K10227 smoE; polyol transport system substrate-binding protein
D GEM_0839 binding-protein-dependent transport system inner membrane protein K10228 smoF; polyol transport system permease protein
D GEM_0840 putative ABC transporter permease K10229 smoG; polyol transport system permease protein
D GEM_1649 ABC transporter permease K02069 STAR2; UDP-glucose/iron transport system permease protein
D GEM_1650 ABC transporter K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein
D GEM_0538 mammalian cell entry protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D GEM_3106 mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D GEM_0536 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D GEM_3107 toluene tolerance abc permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D GEM_0537 ABC transporter ATPase K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D GEM_3108 ABC transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D GEM_0539 ABC transporter auxiliary component-like protein K18480 linN; cholesterol transport system auxiliary component
D GEM_3104 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein
D GEM_5585 toluene tolerance protein K07323 mlaC; phospholipid transport system substrate-binding protein
D GEM_3103 anti-anti-sigma regulatory factor K07122 mlaB; phospholipid transport system transporter-binding protein
D GEM_3688 ABC sugar transporter, periplasmic ligand binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D GEM_3689 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D GEM_3690 ABC sugar transporter, inner membrane subunit K02026 ABC.MS.P1; multiple sugar transport system permease protein
D GEM_2370 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D GEM_2154 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D GEM_2153 PstC protein K02037 pstC; phosphate transport system permease protein
D GEM_2152 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D GEM_2151 ABC-type phosphate transport system ATPase component K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D GEM_2328 extracellular solute-binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_2682 extracellular solute-binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_0114 extracellular solute-binding protein family 3 K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_5767 lysine/arginine/ornithine ABC transporter periplasmic ligand-binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_4911 cationic amino acid ABC transporter, periplasmic binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_5117 ABC amino acid transporter, periplasmic ligand binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_5039 lysine/arginine/ornithine ABC transporter periplasmic-binding protein K10013 argT; lysine/arginine/ornithine transport system substrate-binding protein
D GEM_2337 polar amino acid ABC transporter inner membrane subunit K10015 hisM; histidine transport system permease protein
D GEM_5037 ABC His/Glu/Gln/Arg/opine transporter, inner membrane subunit K10015 hisM; histidine transport system permease protein
D GEM_1022 polar amino acid ABC transporter, inner membrane subunit K10015 hisM; histidine transport system permease protein
D GEM_2338 polar amino acid ABC transporter, inner membrane subunit K10016 hisQ; histidine transport system permease protein
D GEM_5038 ABC His/Glu/Gln/Arg/opine transporter, inner membrane subunit K10016 hisQ; histidine transport system permease protein
D GEM_1023 amino acid ABC transporter permease K10016 hisQ; histidine transport system permease protein
D GEM_2336 histidine ABC transporter ATP-binding protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D GEM_5036 histidine ABC transporter ATP-binding protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D GEM_1021 amino acid ABC transporter ATPase K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D GEM_1024 cationic amino acid ABC transporter periplasmic binding protein K10014 hisJ; histidine transport system substrate-binding protein
D GEM_5651 periplasmic solute-binding protein K10014 hisJ; histidine transport system substrate-binding protein
D GEM_4538 glutamine ABC transporter periplasmic protein K10036 glnH; glutamine transport system substrate-binding protein
D GEM_4537 glutamine ABC transporter permease K10037 glnP; glutamine transport system permease protein
D GEM_4536 glutamine ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D GEM_2852 extracellular solute-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D GEM_1249 extracellular solute-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D GEM_2850 polar amino acid ABC transporter inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D GEM_2851 polar amino acid ABC transporter inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D GEM_2849 polar amino acid transporter ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D GEM_4767 glutamate/aspartate ABC transporter, ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D GEM_3595 Cystine ABC transporter, periplasmic cystine-binding protein FliY K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_1877 extracellular solute-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_0293 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_3050 extracellular solute-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_4769 extracellular solute-binding protein, family 3 K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_3594 amino acid ABC transporter inner membrane protein K10009 tcyB; L-cystine transport system permease protein
D GEM_1878 polar amino acid ABC transporter, inner membrane subunit K10009 tcyB; L-cystine transport system permease protein
D GEM_0294 putative amino acid ABC transporter permease K10009 tcyB; L-cystine transport system permease protein
D GEM_4768 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K10009 tcyB; L-cystine transport system permease protein
D GEM_0295 putative amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D GEM_3593 ABC transporter related protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D GEM_0080 ABC branched-chain amino acid family transporter, periplasmic ligand binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0084 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0951 branched-chain amino acid transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_5388 putative periplasmic solute-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_2348 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0109 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_4521 branched chain amino acid ABC transporter periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0187 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_3709 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_1155 branched chain amino acid ABC transporter periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_3823 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_3423 putative amino acid ABC transporter solute binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_5222 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_5889 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_4273 branched chain amino acid ABC transporter periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_4668 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D GEM_0081 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_0085 High-affinity branched-chain amino acid transport system permease protein LivH K01997 livH; branched-chain amino acid transport system permease protein
D GEM_0933 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_2016 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_4662 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_3822 ABC transporter permease protein K01997 livH; branched-chain amino acid transport system permease protein
D GEM_3424 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D GEM_0086 branched chain amino acid ABC transporter ATPase/inner membrane protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_3821 ABC transporter ATP-binding/permease protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_0082 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D GEM_0934 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D GEM_2015 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D GEM_4661 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D GEM_3425 leucine/isoleucine/valine transporter permease subunit K01998 livM; branched-chain amino acid transport system permease protein
D GEM_0078 ABC transporter-like protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_0935 ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_2014 ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_4664 ABC transporter-like protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_3426 ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D GEM_0079 branched chain amino acid ABC transporter ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_0936 ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_0087 ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_2013 ABC transporter K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_4663 ABC transporter-like protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_3427 branched chain amino acid ABC transporter ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein
D GEM_5866 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D GEM_0606 family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D GEM_2459 YaeC family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D GEM_5765 YaeC family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D GEM_5869 binding-protein-dependent transport system inner membrane protein K02072 metI; D-methionine transport system permease protein
D GEM_2460 binding-protein-dependent transport system inner membrane protein K02072 metI; D-methionine transport system permease protein
D GEM_5868 ABC transporter K02071 metN; D-methionine transport system ATP-binding protein
D GEM_2461 ABC transporter K02071 metN; D-methionine transport system ATP-binding protein
D GEM_2615 branched chain amino acid ABC transporter periplasmic ligand-binding protein K11959 urtA; urea transport system substrate-binding protein
D GEM_2616 inner-membrane translocator K11960 urtB; urea transport system permease protein
D GEM_2617 ABC-type branched-chain amino acid transport system permease component K11961 urtC; urea transport system permease protein
D GEM_2618 ABC transporter-like protein K11962 urtD; urea transport system ATP-binding protein
D GEM_2619 urea ABC transporter, ATP-binding protein UrtE K11963 urtE; urea transport system ATP-binding protein
D GEM_0609 abc-type periplasmic component K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D GEM_0610 inner-membrane translocator K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D GEM_0611 ABC transporter, ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D GEM_3965 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D GEM_1798 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D GEM_4553 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D GEM_4165 twin-arginine translocation pathway signal K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D GEM_4169 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D GEM_4528 extracellular solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D GEM_1796 polar amino acid ABC transporter inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D GEM_1797 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D GEM_4551 amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D GEM_4552 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D GEM_3963 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D GEM_3964 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D GEM_4166 polar amino acid ABC transporter inner membrane subunit K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D GEM_4554 ABC transporter, putative K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D GEM_5678 putative periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D GEM_5679 putative oligopeptide transporter permease K15581 oppB; oligopeptide transport system permease protein
D GEM_5680 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D GEM_5681 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D GEM_5682 oligopeptide/dipeptide ABC transporter ATPase K10823 oppF; oligopeptide transport system ATP-binding protein
D GEM_0397 extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D GEM_0514 extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D GEM_4622 extracellular solute-binding protein K12368 dppA; dipeptide transport system substrate-binding protein
D GEM_0398 oligopeptide/dipeptide ABC transporter, inner membrane subunit K12369 dppB; dipeptide transport system permease protein
D GEM_0399 dipeptide ABC transporter, permease protein DppC K12370 dppC; dipeptide transport system permease protein
D GEM_0400 oligopeptide/dipeptide ABC transporter, ATPase subunit K12371 dppD; dipeptide transport system ATP-binding protein
D GEM_0401 dipeptide transporter ATP-binding subunit K12372 dppF; dipeptide transport system ATP-binding protein
D GEM_4453 extracellular solute-binding protein family 5 K13889 gsiB; glutathione transport system substrate-binding protein
D GEM_4452 binding-protein-dependent transport systems inner membrane component K13890 gsiC; glutathione transport system permease protein
D GEM_4451 binding-protein-dependent transport systems inner membrane component K13891 gsiD; glutathione transport system permease protein
D GEM_4454 oligopeptide/dipeptide ABC transporter ATPase subunit K13892 gsiA; glutathione transport system ATP-binding protein
D GEM_3869 extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D GEM_3868 binding-protein-dependent transport system inner membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D GEM_3867 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D GEM_3866 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D GEM_3865 ABC transporter related protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D GEM_1372 ABC transporter substrate-binding protein K13893 yejA; microcin C transport system substrate-binding protein
D GEM_1373 binding-protein-dependent transport system inner membrane protein K13894 yejB; microcin C transport system permease protein
D GEM_1374 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein
D GEM_1375 ABC transporter K13896 yejF; microcin C transport system ATP-binding protein
D GEM_1778 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D GEM_1780 Ferrichrome transport system permease protein fhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D GEM_1781 ABC transporter-like protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D GEM_0979 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D GEM_0974 transport system permease K02015 ABC.FEV.P; iron complex transport system permease protein
D GEM_0975 ABC transporter-like protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D GEM_0833 periplasmic solute binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D GEM_0831 ABC-3 protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D GEM_0832 ABC transporter-like protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D GEM_2758 ABC-2 type transporter K09688 kpsM; capsular polysaccharide transport system permease protein
D GEM_2756 lipopolysaccharide biosynthesis protein K10107 kpsE; capsular polysaccharide transport system permease protein
D GEM_2757 ABC transporter K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D GEM_2650 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D GEM_2649 ABC transporter K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D GEM_0961 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D GEM_0960 putative permease K11720 lptG; lipopolysaccharide export system permease protein
D GEM_0651 ABC transporter-like protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D GEM_1826 ABC-2 type transporter, NodJ family K09694 nodJ; lipooligosaccharide transport system permease protein
D GEM_1825 nodulation ABC transporter NodI K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D GEM_1314 LolC/E family lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D GEM_4860 Lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D GEM_1315 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D GEM_3101 ABC transporter membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D GEM_3333 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D GEM_4354 ABC efflux pump, inner membrane subunit K01992 ABC-2.P; ABC-2 type transport system permease protein
D GEM_3102 amino acid ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D GEM_3334 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D GEM_4353 ABC transporter, ATPase subunit K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D GEM_0214 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D GEM_1131 permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D GEM_0213 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D GEM_1509 ABC transporter K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D GEM_0215 ABC transporter K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D GEM_0471 Bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D GEM_2429 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D GEM_1589 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D GEM_2139 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D GEM_1806 metabolite/H+ symporter, major facilitator superfamily (MFS) K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D GEM_5217 major facilitator superfamily MFS 1 K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D GEM_2172 General substrate transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D GEM_5887 major facilitator transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D GEM_4237 shikimate transporter K08172 shiA; MFS transporter, MHS family, shikimate and dehydroshikimate transport protein
D GEM_5808 major facilitator transporter K08172 shiA; MFS transporter, MHS family, shikimate and dehydroshikimate transport protein
D GEM_4589 major facilitator transporter K08172 shiA; MFS transporter, MHS family, shikimate and dehydroshikimate transport protein
D GEM_2881 major facilitator transporter K08173 ydfJ; MFS transporter, MHS family, metabolite:H+ symporter
D GEM_1897 major facilitator transporter K08178 JEN; MFS transporter, SHS family, lactate transporter
D GEM_5878 d-galactonate transporter K03535 gudP; MFS transporter, ACS family, glucarate transporter
D GEM_0210 d-galactonate transporter K03535 gudP; MFS transporter, ACS family, glucarate transporter
D GEM_3436 glucarate transporter K03535 gudP; MFS transporter, ACS family, glucarate transporter
D GEM_3918 d-galactonate transporter K03535 gudP; MFS transporter, ACS family, glucarate transporter
D GEM_5232 major facilitator transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D GEM_3238 major facilitator transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D GEM_4196 d-galactonate transporter K13021 ttuB; MFS transporter, ACS family, tartrate transporter
D GEM_5063 major facilitator superfamily MFS 1 K13021 ttuB; MFS transporter, ACS family, tartrate transporter
D GEM_5188 major facilitator transporter K13021 ttuB; MFS transporter, ACS family, tartrate transporter
D GEM_5895 major facilitator superfamily MFS 1 K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter
D GEM_5630 major facilitator superfamily transporter ACS family protein K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter
D GEM_3977 major facilitator superfamily transporter ACS family protein K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter
D GEM_5291 major facilitator transporter K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter
D GEM_4468 major facilitator transporter K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter
D GEM_2709 major facilitator superfamily MFS 1 K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter
D GEM_5523 major facilitator transporter K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter
D GEM_0850 major facilitator transporter K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter
D GEM_3829 4-hydroxybenzoate transporter K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter
D GEM_5617 putative 3-hydroxyphenylpropionic transporter MhpT K05819 mhpT; MFS transporter, AAHS family, 3-hydroxyphenylpropionic acid transporter
D GEM_3250 major facilitator superfamily MFS 1 K26744 vanK; MFS transporter, AAHS family, vanillate permease
D GEM_5116 major facilitator superfamily MFS 1 K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D GEM_1736 major facilitator transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D GEM_5359 nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D GEM_3951 major facilitator transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D GEM_1401 major facilitator superfamily MFS 1 K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D GEM_0333 major facilitator transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D GEM_4649 major facilitator superfamily MFS 1 K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D GEM_2567 major facilitator superfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D GEM_2200 major facilitator superfamily protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D GEM_2705 major facilitator transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D GEM_1341 Major facilitator superfamily MFS 1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D GEM_5779 major facilitator transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D GEM_5298 major facilitator transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D GEM_0043 EmrB/QacA family drug resistance transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D GEM_4489 Multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D GEM_1930 EmrB/QacA family drug resistance transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D GEM_4853 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D GEM_5009 EmrB/QacA family drug resistance transporter K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D GEM_3348 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D GEM_4917 major facilitator transporter K08166 mmr; MFS transporter, DHA2 family, methylenomycin A resistance protein
D GEM_1038 major facilitator transporter K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D GEM_4831 major facilitator transporter K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D GEM_1986 major facilitator superfamily MFS 1 K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D GEM_0367 major facilitator family transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D GEM_3942 major facilitator superfamily MFS 1 K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D GEM_4694 general substrate transporter K08368 yaaU; MFS transporter, putative metabolite transport protein
D GEM_3212 major facilitator transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D GEM_1711 major facilitator transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D GEM_3776 major facilitator transporter K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D GEM_0579 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D GEM_0578 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D GEM_0618 phosphoenolpyruvate-protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202]
D GEM_0619 PTS system N-acetylglucosamine-specific transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D GEM_0577 sugar transport PTS system IIa component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D GEM_0648 putative PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D GEM_0154 MIP family channel protein K06188 aqpZ; aquaporin Z
D GEM_0758 MIP family channel protein K02440 glpF; glycerol uptake facilitator
D GEM_3818 TrkA domain-containing protein K10716 kch; voltage-gated potassium channel
D GEM_4327 voltage-gated potassium channel K10716 kch; voltage-gated potassium channel
D GEM_0495 K channel inward rectifier conserved region 2 domain protein K08715 IRPC; inward rectifier potassium channel
D GEM_0574 ammonium transporter K03320 amt; ammonium transporter, Amt family
D GEM_2288 Rh-like protein/ammonium transporter K03320 amt; ammonium transporter, Amt family
D GEM_5287 glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_4906 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_2827 glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5092 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5168 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5604 glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_1185 glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5248 glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_4811 putative glutathione-S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5732 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5751 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_0496 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_3997 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_0410 glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5031 glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_5011 glutathione S-transferase-like protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D GEM_3078 glutathione S-transferase K03599 sspA; stringent starvation protein A
D GEM_1610 protein of unknown function UPF0005 K19416 yccA; modulator of FtsH protease
D GEM_1473 MscL protein K03282 mscL; large conductance mechanosensitive channel
D GEM_3211 mechanosensitive ion channel MscS K05802 mscK; potassium-dependent mechanosensitive channel
D GEM_2760 MscS mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D GEM_5387 MscS mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D GEM_4850 MscS Mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel
D GEM_3875 MscS Mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel
D GEM_3797 Urea transporter K08717 utp; urea transporter
D GEM_0159 flagellar motor component-like protein K02556 motA; chemotaxis protein MotA
D GEM_5023 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D GEM_0160 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D GEM_5022 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D GEM_2869 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB
D GEM_1216 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB
D GEM_2868 biopolymer transport protein exbD1 K03559 exbD; biopolymer transport protein ExbD
D GEM_1215 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D GEM_2730 MotA/TolQ/ExbB proton channel K03562 tolQ; biopolymer transport protein TolQ
D GEM_2731 biopolymer transport protein ExbD/TolR K03560 tolR; biopolymer transport protein TolR
D GEM_1692 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D GEM_3031 Mg2 transporter protein CorA family protein K16074 zntB; zinc transporter
D GEM_2584 camphor resistance protein CrcB K06199 crcB; fluoride exporter
D GEM_3872 protein of unknown function UPF0187 K08994 yneE; ion channel-forming bestrophin family protein
D GEM_2941 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D GEM_4902 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D GEM_4567 porin Gram-negative type K08720 ompU; outer membrane protein OmpU
D GEM_3374 porin K08720 ompU; outer membrane protein OmpU
D GEM_2481 OmpA/MotB domain-containing protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D GEM_3036 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D GEM_0024 putative fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D GEM_0340 fimbrial usher protein K07347 fimD; outer membrane usher protein
D GEM_3862 Outer membrane usher protein K07347 fimD; outer membrane usher protein
D GEM_0432 putative outer membrane usher transmembrane protein K07347 fimD; outer membrane usher protein
D GEM_3507 outer membrane autotransporter barrel domain protein K19231 bmaC; fibronectin-binding autotransporter adhesin
D GEM_3651 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor
D GEM_4575 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor
D GEM_0488 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor
D GEM_4128 TonB-dependent receptor K16092 btuB; vitamin B12 transporter
D GEM_3245 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GEM_4159 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GEM_5076 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GEM_2514 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GEM_2067 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GEM_1772 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GEM_4839 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D GEM_0031 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D GEM_3753 outer membrane efflux protein K12340 tolC; outer membrane protein
D GEM_5858 RND efflux system outer membrane lipoprotein K18903 oprC; outer membrane protein, multidrug efflux system
D GEM_4333 RND efflux system outer membrane lipoprotein K18903 oprC; outer membrane protein, multidrug efflux system
D GEM_3727 RND efflux system outer membrane lipoprotein K18300 oprN; outer membrane protein, multidrug efflux system
D GEM_1791 RND efflux system outer membrane lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D GEM_0826 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D GEM_4857 RND efflux system, outer membrane lipoprotein, NodT K18139 oprM; outer membrane protein, multidrug efflux system
D GEM_3553 outer membrane efflux protein MdtP K15550 mdtP; outer membrane protein, multidrug efflux system
D GEM_4926 Polysaccharide export lipoprotein Wza K01991 wza; polysaccharide biosynthesis/export protein
D GEM_4421 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D GEM_2668 carbohydrate-selective porin OprB K07267 oprB; porin
D GEM_3611 carbohydrate-selective porin OprB K07267 oprB; porin
D GEM_1429 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D GEM_1617 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB
D GEM_1946 putative lipo protein K07287 bamC; outer membrane protein assembly factor BamC
D GEM_1334 lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D GEM_1632 DNA uptake lipoprotein-like protein K05807 bamD; outer membrane protein assembly factor BamD
D GEM_2871 SmpA/OmlA domain-containing protein K06186 bamE; outer membrane protein assembly factor BamE
D GEM_0991 surface antigen (D15) K07278 tamA; translocation and assembly module TamA
D GEM_0992 hypothetical protein K09800 tamB; translocation and assembly module TamB
D GEM_5688 hemagluttinin/autotransporter adhesin K21449 ata; trimeric autotransporter adhesin
D GEM_3268 hemagluttinin domain protein K21449 ata; trimeric autotransporter adhesin
D GEM_0652 OstA family protein K09774 lptA; lipopolysaccharide export system protein LptA
D GEM_0653 protein of unknown function DUF1239 K11719 lptC; lipopolysaccharide export system protein LptC
D GEM_0735 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein
D GEM_2866 rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D GEM_2048 cellulose synthase domain-containing protein K20543 bcsC; cellulose synthase operon protein C
D GEM_0748 Mg2+ and Co2+ transporter CorC K06189 corC; hemolysin (HlyC) family protein
D GEM_0041 LrgA family protein K06518 cidA; holin-like protein
D GEM_3209 amino acid permease-associated protein K11733 lysP; lysine-specific permease
D GEM_5057 amino acid permease-associated protein K11733 lysP; lysine-specific permease
D GEM_4812 Lysine-specific permease K11733 lysP; lysine-specific permease
D GEM_4283 amino acid permease-associated region K11734 aroP; aromatic amino acid transport protein AroP
D GEM_2596 GABA permease K11735 gabP; GABA permease
D GEM_3003 Aromatic amino acid transport protein AroP K11735 gabP; GABA permease
D GEM_4571 amino acid permease-associated protein K11738 ansP; L-asparagine permease
D GEM_5804 amino acid permease-associated protein K11738 ansP; L-asparagine permease
D GEM_2278 amino acid permease-associated region K16234 hutT; histidine transporter
D GEM_3528 amino acid permease-associated region K03759 adiC; arginine:agmatine antiporter
D GEM_0121 Ethanolamine permease K16238 eat; ethanolamine permease
D GEM_4440 amino acid permease-associated region K16263 yjeH; amino acid efflux transporter
D GEM_5283 CzcA family heavy metal efflux protein K07787 cusA; copper/silver efflux system protein
D GEM_5857 multidrug efflux system transporter protein CeoB K18902 bpeF; multidrug efflux pump
D GEM_1673 acriflavin resistance protein K18303 mexK; multidrug efflux pump
D GEM_1792 RND efflux system, inner membrane transporter CmeB K18095 mexY; multidrug efflux pump
D GEM_0825 RND family efflux system transporter protein K18138 acrB; multidrug efflux pump
D GEM_4856 hydrophobe/amphiphile efflux-1 (HAE1) family protein K18146 adeB; multidrug efflux pump
D GEM_3726 hydrophobe/amphiphile efflux-1 (HAE1) family protein K19585 oqxB; multidrug efflux pump
D GEM_2319 acriflavin resistance protein K07788 mdtB; multidrug efflux pump
D GEM_2320 acriflavin resistance protein K07789 mdtC; multidrug efflux pump
D GEM_1870 small multidrug resistance protein K03297 emrE; small multidrug resistance pump
D GEM_1129 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D GEM_0865 protein of unknown function DUF6 transmembrane K15268 eamA; O-acetylserine/cysteine efflux transporter
D GEM_5673 transporter DMT superfamily protein K05786 rarD; chloramphenicol-sensitive protein RarD
D GEM_2171 protein of unknown function UPF0060 K09771 TC.SMR3; small multidrug resistance family-3 protein
D GEM_3485 gluconate transporter K13629 dsdX; D-serine transporter
D GEM_2859 gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D GEM_0281 L-lactate transport K03303 lutP; lactate permease
D GEM_0687 L-lactate transport K03303 lutP; lactate permease
D GEM_3928 sodium/calcium exchanger membrane region K07300 chaA; Ca2+:H+ antiporter
D GEM_5281 sodium/calcium exchanger membrane region K07301 yrbG; cation:H+ antiporter
D GEM_0560 acetate permease K14393 actP; cation/acetate symporter
D GEM_1226 Na+/solute symporter K14393 actP; cation/acetate symporter
D GEM_2233 SSS family APC transporter K14393 actP; cation/acetate symporter
D GEM_0561 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D GEM_5110 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D GEM_2875 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein
D GEM_4981 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D GEM_0500 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D GEM_2039 sodium/hydrogen exchanger K24163 nhaK; monovalent cation/hydrogen antiporter
D GEM_0656 sodium/hydrogen exchanger K03455 KEA1_2_3; K+:H+ antiporter
D GEM_4394 sodium/hydrogen exchanger K26735 KEA4_5_6; K+:H+ antiporter
D GEM_0429 Xanthine/uracil permease K09016 rutG; putative pyrimidine permease RutG
D GEM_0827 xanthine/uracil transporter K24206 uacT; uric acid transporter
D GEM_4631 xanthine permease K16345 xanP; xanthine permease XanP
D GEM_3218 xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D GEM_3456 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D GEM_5770 xanthine/uracil/vitamin C transporter K06901 pbuG; adenine/guanine/hypoxanthine permease
D GEM_5419 benzoate transporter K05782 benE; benzoate membrane transport protein
D GEM_1072 Benzoate transport protein K05782 benE; benzoate membrane transport protein
D GEM_1676 Chloride channel core K03281 clcA; chloride channel protein, CIC family
D GEM_4290 Cl-channel, voltage-gated family protein K03281 clcA; chloride channel protein, CIC family
D GEM_3914 Cl-channel, voltage-gated family protein K03281 clcA; chloride channel protein, CIC family
D GEM_2541 Chloride channel core K03281 clcA; chloride channel protein, CIC family
D GEM_4973 Chloride channel protein K03281 clcA; chloride channel protein, CIC family
D GEM_1053 chromate transporter K07240 chrA; chromate transporter
D GEM_5502 chromate transporter K07240 chrA; chromate transporter
D GEM_2589 Chromate transport protein ChrA K07240 chrA; chromate transporter
D GEM_2590 chromate transporter K07240 chrA; chromate transporter
D GEM_0888 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter
D GEM_0902 high-affinity nickel-transporter K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D GEM_1759 high-affinity nickel-transporter K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D GEM_3876 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family
D GEM_4947 manganese transport protein MntH K03322 mntH; manganese transport protein
D GEM_3921 TRAP dicarboxylate transporter-DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein
D GEM_4099 Na/Pi-cotransporter II-related protein K03324 yjbB; phosphate:Na+ symporter
D GEM_0879 virulence factor MVIN-like protein K03980 murJ; putative peptidoglycan lipid II flippase
D GEM_2228 putative permease K13936 mdcF; malonate transporter and related proteins
D GEM_4307 auxin efflux carrier K13936 mdcF; malonate transporter and related proteins
D GEM_4597 auxin efflux carrier K13936 mdcF; malonate transporter and related proteins
D GEM_1627 potassium transporter K03549 kup; KUP system potassium uptake protein
D GEM_5539 lysine exporter protein LysE/YggA K06895 lysE; L-lysine exporter family protein LysE/ArgO
D GEM_2579 lysine exporter protein (lyse ygga) K06895 lysE; L-lysine exporter family protein LysE/ArgO
D GEM_3442 Homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D GEM_4326 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein
D GEM_0220 translocator protein, LysE family K05834 rhtB; homoserine/homoserine lactone efflux protein
D GEM_1228 putative homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D GEM_5108 lysine exporter protein LysE/YggA K05835 rhtC; threonine efflux protein
D GEM_0389 lysine exporter protein LysE/YggA K05835 rhtC; threonine efflux protein
D GEM_5193 lysine exporter protein LysE/YggA K05835 rhtC; threonine efflux protein
D GEM_5228 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein
D GEM_2163 leucine export protein LeuE K11250 leuE; leucine efflux protein
D GEM_2424 branched chain amino acid efflux pump, AzlCD K26605 azlC; branched chain amino acid efflux pump
D GEM_0803 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D GEM_5367 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D GEM_0804 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump
D GEM_2425 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump
D GEM_5368 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump
D GEM_3552 multidrug efflux system protein MdtO K15547 mdtO; multidrug resistance protein MdtO
D GEM_3754 putative multidrug efflux system transporter protein K15547 mdtO; multidrug resistance protein MdtO
D GEM_3932 multiple antibiotic resistance (MarC)-like protein K05595 marC; multiple antibiotic resistance protein
D GEM_4557 hypothetical protein K05595 marC; multiple antibiotic resistance protein
D GEM_2960 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D GEM_2503 transmembrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D GEM_1209 putative permease K07243 FTR; high-affinity iron transporter
D GEM_0456 putative transport related, membrane protein K07243 FTR; high-affinity iron transporter
D GEM_2670 Dyp-type peroxidase K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D GEM_1207 uncharacterized protein probably involved in high-affinity Fe2+ transport K07230 p19; periplasmic iron binding protein
D GEM_2537 TonB family protein K03832 tonB; periplasmic protein TonB
D GEM_1217 TonB-like protein K03832 tonB; periplasmic protein TonB
D GEM_2734 OmpA/MotB family outer membrane protein K03640 pal; peptidoglycan-associated lipoprotein
D GEM_4186 OmpA/MotB family outer membrane protein K03640 pal; peptidoglycan-associated lipoprotein
D GEM_2732 bacteriocin import membrane protein K03646 tolA; colicin import membrane protein
D GEM_2733 TolB protein K03641 tolB; TolB protein
D GEM_2186 putative malonate decarboxylase alpha-subunit K13929 mdcA; malonate decarboxylase alpha subunit [EC:2.3.1.187]
D GEM_2185 malonate decarboxylase subunit delta K13931 mdcC; malonate decarboxylase delta subunit
D GEM_5008 Membrane fusion component of tripartite multidrug resistance system K03543 emrA; membrane fusion protein, multidrug efflux system
D GEM_1929 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system
D GEM_3351 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system
D GEM_4852 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system
D GEM_3551 multidrug resistance protein MdtN K15549 mdtN; membrane fusion protein, multidrug efflux system
D GEM_3755 secretion protein HlyD family protein K15549 mdtN; membrane fusion protein, multidrug efflux system
D GEM_5284 Membrane fusion protein K07798 cusB; membrane fusion protein, copper/silver efflux system
D GEM_0030 anibiotic ABC transporter efflux pump K13408 cvaA; membrane fusion protein
D GEM_5856 RND family efflux transporter MFP subunit K18901 bpeE; membrane fusion protein, multidrug efflux system
D GEM_1674 RND family efflux transporter MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system
D GEM_1793 efflux transporter, RND family, MFP subunit K18094 mexX; membrane fusion protein, multidrug efflux system
D GEM_0824 secretion protein HlyD K03585 acrA; membrane fusion protein, multidrug efflux system
D GEM_4855 multidrug efflux system transport protein K18145 adeA; membrane fusion protein, multidrug efflux system
D GEM_3725 HlyD family secretion protein K19586 oqxA; membrane fusion protein, multidrug efflux system
D GEM_2318 RND family efflux transporter MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D GEM_3478 HlyD family secretion protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D GEM_4925 protein-tyrosine kinase K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GEM_4420 hypothetical protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D GEM_5075 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D GEM_3655 entericidin EcnAB K16348 ecnB; entericidin B
D GEM_3752 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D GEM_5714 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D GEM_1467 hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D GEM_2601 putative transthyretin-like protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D GEM_2602 transthyretin family protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D GEM_0770 copper resistance D domain-containing protein K07245 pcoD; copper resistance protein D
D GEM_5272 copper resistance D domain-containing protein K07245 pcoD; copper resistance protein D
D GEM_0944 copper resistance protein CopC K07156 copC; copper resistance protein C
D GEM_3445 copper resistance protein CopC K07156 copC; copper resistance protein C
D GEM_3488 copper resistance protein CopC K07156 copC; copper resistance protein C
D GEM_5273 copper resistance protein CopC K07156 copC; copper resistance protein C
D GEM_2090 MltA-interacting MipA family protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:bct02044]
D GEM_0031 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D GEM_3753 outer membrane efflux protein K12340 tolC; outer membrane protein
D GEM_0030 anibiotic ABC transporter efflux pump K13408 cvaA; membrane fusion protein
D GEM_0029 ABC transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D GEM_0055 general secretion pathway protein c K02452 gspC; general secretion pathway protein C
D GEM_0058 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D GEM_2293 putative secretion type II protein K02453 gspD; general secretion pathway protein D
D GEM_0057 general secretory pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D GEM_2298 putative GSPE-related protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D GEM_0056 general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D GEM_2299 type II secretion system protein K02455 gspF; general secretion pathway protein F
D GEM_0054 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D GEM_2291 putative GSPG-related protein K02456 gspG; general secretion pathway protein G
D GEM_2292 GSPG-like signal peptide protein K02456 gspG; general secretion pathway protein G
D GEM_2300 GSPG-related transmembrane protein K02456 gspG; general secretion pathway protein G
D GEM_0053 General secretion pathway protein H K02457 gspH; general secretion pathway protein H
D GEM_0052 General secretion pathway protein I K02458 gspI; general secretion pathway protein I
D GEM_0051 putative general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D GEM_0050 General secretion pathway protein K K02460 gspK; general secretion pathway protein K
D GEM_0049 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D GEM_0048 General secretion pathway M protein K02462 gspM; general secretion pathway protein M
D GEM_0047 general secretion pathway protein n K02463 gspN; general secretion pathway protein N
D GEM_2944 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D GEM_0791 general secretion pathway protein H K02650 pilA; type IV pilus assembly protein PilA
D GEM_2942 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB
D GEM_2943 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC
D GEM_2720 putative Tfp pilus assembly protein PilE K02655 pilE; type IV pilus assembly protein PilE
D GEM_3130 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D GEM_2723 prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW
D GEM_2725 Tfp pilus assembly protein FimT-like protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D GEM_4806 hypothetical protein K08086 fimV; pilus assembly protein FimV
D GEM_3269 hypothetical protein K08086 fimV; pilus assembly protein FimV
D GEM_3270 hypothetical protein K08086 fimV; pilus assembly protein FimV
D GEM_1915 peptidase A24A, prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D GEM_4614 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D GEM_1913 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D GEM_4613 Flp pilus assembly CpaB K02279 cpaB; pilus assembly protein CpaB
D GEM_1912 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D GEM_4612 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D GEM_4611 hypothetical protein K02281 cpaD; pilus assembly protein CpaD
D GEM_1911 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE
D GEM_4610 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE
D GEM_1910 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D GEM_4609 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D GEM_1909 type II secretion system protein K12510 tadB; tight adherence protein B
D GEM_4608 type II secretion system protein K12510 tadB; tight adherence protein B
D GEM_1908 type II secretion system protein K12511 tadC; tight adherence protein C
D GEM_4607 type II secretion system protein K12511 tadC; tight adherence protein C
D GEM_1907 Flp pilus assembly protein K27079 tadD; tight adherence protein D
D GEM_1905 membrane protein K27080 tadG; tight adherence protein G
D GEM_1916 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D GEM_4615 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D GEM_2582 membrane protein K02221 yggT; YggT family protein
D GEM_2466 helix-hairpin-helix motif protein K02237 comEA; competence protein ComEA
D GEM_1579 flagellar hook-length control protein K02237 comEA; competence protein ComEA
D GEM_1317 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D GEM_0177 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D GEM_0176 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D GEM_0382 putative flagellar protein FhlB K04061 flhB2; flagellar biosynthesis protein
D GEM_0377 flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF
D GEM_0375 flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH
D GEM_0374 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D GEM_0037 Type III secretion system outer membrane O protein K02417 fliN; flagellar motor switch protein FliN
D GEM_0036 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D GEM_0035 flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D GEM_0034 flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D GEM_0033 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D GEM_3619 Lytic transglycosylase catalytic K03194 virB1; type IV secretion system protein VirB1
D GEM_2999 protein-disulfide isomerase-like protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D GEM_3479 Protein-disulfide isomerase K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D GEM_4214 hypothetical protein K11891 impL; type VI secretion system protein ImpL
D GEM_3034 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D GEM_4215 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D GEM_3048 transmembrane protein K11892 impK; type VI secretion system protein ImpK
D GEM_4216 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D GEM_3047 type vi secretion system protein K11893 impJ; type VI secretion system protein ImpJ
D GEM_4205 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D GEM_3039 type vi secretion system protein K11895 impH; type VI secretion system protein ImpH
D GEM_4206 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D GEM_2115 type VI secretion protein K11896 impG; type VI secretion system protein ImpG
D GEM_3891 type VI secretion protein K11896 impG; type VI secretion system protein ImpG
D GEM_3040 type vi secretion system protein K11896 impG; type VI secretion system protein ImpG
D GEM_2088 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D GEM_4207 hypothetical protein K11897 impF; type VI secretion system protein ImpF
D GEM_3041 putative type VI secretion system protein TssE K11897 impF; type VI secretion system protein ImpF
D GEM_4209 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D GEM_3043 type VI secretion protein K11900 impC; type VI secretion system protein ImpC
D GEM_4210 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D GEM_3044 type vi secretion system protein K11901 impB; type VI secretion system protein ImpB
D GEM_4211 ImpA-like protein K11902 impA; type VI secretion system protein ImpA
D GEM_3037 type VI secretion-associated protein, ImpA family K11902 impA; type VI secretion system protein ImpA
D GEM_3042 type vi secretion system protein K11903 hcp; type VI secretion system secreted protein Hcp
D GEM_2123 ImpA family type VI secretion-associated protein K11904 vgrG; type VI secretion system secreted protein VgrG
D GEM_3884 ImpA family type VI secretion-associated protein K11904 vgrG; type VI secretion system secreted protein VgrG
D GEM_4203 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG
D GEM_2080 rhs element vgr K11904 vgrG; type VI secretion system secreted protein VgrG
D GEM_2076 rhs element vgr K11904 vgrG; type VI secretion system secreted protein VgrG
D GEM_4217 hypothetical protein K11906 vasD; type VI secretion system protein VasD
D GEM_3046 type vi secretion system protein K11906 vasD; type VI secretion system protein VasD
D GEM_4204 putative ATP-dependent Clp protease, ATP-binding subunit ClpB K11907 vasG; type VI secretion system protein VasG
D GEM_3038 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D GEM_4213 hypothetical protein K11890 impM; type VI secretion system protein ImpM
D GEM_3035 hypothetical protein K11890 impM; type VI secretion system protein ImpM
D GEM_0026 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_1787 major type 1 subunit fimbrin K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_1790 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_0342 P pilus assembly protein, pilin FimA K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_0338 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_3864 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_0023 type-1 fimbrial protein, A subunit K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_3861 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_1788 pili assembly chaperone K07346 fimC; fimbrial chaperone protein
D GEM_0433 putative pili assembly chaperone transmembrane protein K07346 fimC; fimbrial chaperone protein
D GEM_0024 putative fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D GEM_0340 fimbrial usher protein K07347 fimD; outer membrane usher protein
D GEM_3862 Outer membrane usher protein K07347 fimD; outer membrane usher protein
D GEM_0432 putative outer membrane usher transmembrane protein K07347 fimD; outer membrane usher protein
D GEM_0434 signal peptide protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D GEM_1789 fimbrial biogenesis outer membrane usher protein K12518 papC; outer membrane usher protein PapC
D GEM_2950 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D GEM_0585 preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB
D GEM_2807 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D GEM_3187 Preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D GEM_2808 SecD/SecF/SecDF export membrane protein K03074 secF; preprotein translocase subunit SecF
D GEM_1160 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D GEM_3153 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D GEM_2929 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D GEM_0630 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D GEM_2806 YajC protein K03210 yajC; preprotein translocase subunit YajC
D GEM_0266 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D GEM_3086 twin arginine translocase protein A K03116 tatA; sec-independent protein translocase protein TatA
D GEM_3085 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D GEM_3084 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:bct02042]
D GEM_2941 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D GEM_4902 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D GEM_5660 hemolysin III family channel protein K11068 hlyIII; hemolysin III
D GEM_2347 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_0283 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_4286 Phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D GEM_0485 phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
C 02022 Two-component system [BR:bct02022]
D GEM_2148 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D GEM_2149 two component transcriptional regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D GEM_1485 periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D GEM_1029 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D GEM_3663 periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D GEM_1486 osmolarity response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D GEM_1028 two component transcriptional regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D GEM_0901 two component transcriptional regulator, winged helix family protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D GEM_3664 two component transcriptional regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D GEM_4335 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D GEM_5280 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D GEM_4334 two component heavy metal response transcriptional regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D GEM_5279 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D GEM_5041 periplasmic sensor signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D GEM_1126 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D GEM_5040 two component transcriptional regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D GEM_1127 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D GEM_0018 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D GEM_5155 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D GEM_4372 integral membrane sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D GEM_5154 two component transcriptional regulator K07774 tctD; two-component system, OmpR family, response regulator TctD
D GEM_4373 two component transcriptional regulator K07774 tctD; two-component system, OmpR family, response regulator TctD
D GEM_0017 two-component regulatory system, response regulator protein K07774 tctD; two-component system, OmpR family, response regulator TctD
D GEM_5474 histidine kinase K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3]
D GEM_5473 two component transcriptional regulator K18144 adeR; two-component system, OmpR family, response regulator AdeR
D GEM_4858 two-component regulatory system response regulator protein K18144 adeR; two-component system, OmpR family, response regulator AdeR
D GEM_2092 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D GEM_3503 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D GEM_0816 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D GEM_3225 two component transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator
D GEM_1364 two-component regulatory system, response regulator protein K02483 K02483; two-component system, OmpR family, response regulator
D GEM_0815 two component transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator
D GEM_2091 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D GEM_3502 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D GEM_0784 two component transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator
D GEM_0070 two component transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator
D GEM_3013 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D GEM_1366 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D GEM_3516 two component transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator
D GEM_5587 two-component regulatory system response regulator protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D GEM_5148 integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D GEM_5347 integral membrane sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D GEM_5350 periplasmic sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D GEM_0022 signal transduction response regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D GEM_5348 two component LuxR family transcriptional regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D GEM_3644 two component LuxR family transcriptional regulator K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D GEM_0386 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D GEM_5147 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D GEM_3640 DNA-binding response regulator, LuxR family K07690 evgA; two-component system, NarL family, response regulator EvgA
D GEM_2303 putative two-component sensor histidine kinase transcription regulator protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D GEM_5588 integral membrane sensor signal transduction histidine kinase K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3]
D GEM_1280 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D GEM_1281 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D GEM_0313 multi-sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D GEM_0314 two component transcriptional regulator, Fis family K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D GEM_0562 histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D GEM_5864 periplasmic sensor signal transduction histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D GEM_0563 two component sigma54 specific Fis family transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D GEM_5863 two component, sigma54 specific, Fis family transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D GEM_0164 CheW-like protein:ATP-binding region K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GEM_4548 putative CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GEM_0161 chemotaxis two-component response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GEM_0170 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GEM_4544 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GEM_0169 chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D GEM_4975 CheA signal transduction histidine kinase K13490 wspE; two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE
D GEM_4582 response regulator receiver modulated diguanylate cyclase K11444 wspR; two-component system, chemotaxis family, response regulator WspR [EC:2.7.7.65]
D GEM_4974 chemotaxis-specific methylesterase K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61]
D GEM_4581 chemotaxis-specific methylesterase K13491 wspF; two-component system, chemotaxis family, response regulator WspF [EC:3.1.1.61]
D GEM_0347 integral membrane sensor signal transduction histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D GEM_0348 response regulator receiver protein K15012 regA; two-component system, response regulator RegA
D GEM_3948 nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein K22067 nasS; two-component system, oxyanion-binding sensor
D GEM_3949 Response regulator receiver K07183 nasT; two-component system, response regulator / RNA-binding antiterminator
C 02035 Bacterial motility proteins [BR:bct02035]
D GEM_0164 CheW-like protein:ATP-binding region K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GEM_4548 putative CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D GEM_0165 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D GEM_5575 chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC
D GEM_0168 chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D GEM_0167 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D GEM_0169 chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D GEM_0161 chemotaxis two-component response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GEM_0170 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GEM_4544 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D GEM_0171 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ
D GEM_3645 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D GEM_1985 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) K03406 mcp; methyl-accepting chemotaxis protein
D GEM_0605 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D GEM_5021 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D GEM_4255 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D GEM_4158 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D GEM_0166 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_5712 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_5120 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_3812 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_1810 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D GEM_5843 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D GEM_5844 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D GEM_0375 flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH
D GEM_0374 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D GEM_0373 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D GEM_0036 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D GEM_0035 flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D GEM_0034 flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D GEM_0033 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D GEM_0177 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D GEM_0176 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D GEM_0376 Flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG
D GEM_0038 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D GEM_0037 Type III secretion system outer membrane O protein K02417 fliN; flagellar motor switch protein FliN
D GEM_0377 flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF
D GEM_0424 flagellar basal body P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D GEM_0416 flagellar basal body P-ring biosynthesis protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D GEM_0423 flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D GEM_0039 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D GEM_0378 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D GEM_0372 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D GEM_0417 flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D GEM_0418 flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D GEM_0419 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D GEM_0421 flagellar basal body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D GEM_0422 flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D GEM_0425 Flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D GEM_0420 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D GEM_0427 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D GEM_0428 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D GEM_0414 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D GEM_0148 flagellin K02406 fliC; flagellin
D GEM_0147 Flagellar capping protein K02407 fliD; flagellar hook-associated protein 2
D GEM_0379 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D GEM_0380 hypothetical protein K02423 fliT; flagellar protein FliT
D GEM_0146 hypothetical protein K02423 fliT; flagellar protein FliT
D GEM_0157 transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D GEM_0158 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D GEM_0180 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D GEM_0159 flagellar motor component-like protein K02556 motA; chemotaxis protein MotA
D GEM_5023 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D GEM_0160 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D GEM_5022 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D GEM_3595 Cystine ABC transporter, periplasmic cystine-binding protein FliY K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_1877 extracellular solute-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_0293 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_3050 extracellular solute-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_4769 extracellular solute-binding protein, family 3 K02424 tcyA; L-cystine transport system substrate-binding protein
D GEM_0415 putative anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D GEM_0178 flagellar biosynthesis regulator FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D GEM_0179 flagellar biosynthesis protein FlhG K04562 flhG; flagellar biosynthesis protein FlhG
D GEM_0791 general secretion pathway protein H K02650 pilA; type IV pilus assembly protein PilA
D GEM_2942 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB
D GEM_2943 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC
D GEM_2944 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D GEM_3130 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D GEM_2723 prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW
D GEM_2720 putative Tfp pilus assembly protein PilE K02655 pilE; type IV pilus assembly protein PilE
D GEM_1916 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D GEM_4615 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D GEM_1915 peptidase A24A, prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D GEM_4614 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D GEM_1913 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D GEM_4613 Flp pilus assembly CpaB K02279 cpaB; pilus assembly protein CpaB
D GEM_1912 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D GEM_4612 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D GEM_4611 hypothetical protein K02281 cpaD; pilus assembly protein CpaD
D GEM_1911 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE
D GEM_4610 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE
D GEM_1910 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D GEM_4609 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D GEM_0026 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_1787 major type 1 subunit fimbrin K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_1790 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_0342 P pilus assembly protein, pilin FimA K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_0338 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_3864 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_0023 type-1 fimbrial protein, A subunit K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_3861 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D GEM_1788 pili assembly chaperone K07346 fimC; fimbrial chaperone protein
D GEM_0433 putative pili assembly chaperone transmembrane protein K07346 fimC; fimbrial chaperone protein
D GEM_0024 putative fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D GEM_0340 fimbrial usher protein K07347 fimD; outer membrane usher protein
D GEM_3862 Outer membrane usher protein K07347 fimD; outer membrane usher protein
D GEM_0432 putative outer membrane usher transmembrane protein K07347 fimD; outer membrane usher protein
D GEM_0434 signal peptide protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:bct04812]
D GEM_0324 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D GEM_3505 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D GEM_2954 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D GEM_2955 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D GEM_2546 septum formation inhibitor K03610 minC; septum site-determining protein MinC
D GEM_2545 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D GEM_2544 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D GEM_0091 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D GEM_0986 cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D GEM_0667 cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D GEM_5568 cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D GEM_4034 gp58 K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GEM_0092 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GEM_5567 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:bct04147]
D GEM_1061 heat shock protein 90 K04079 HSP90A; molecular chaperone HtpG
D GEM_1321 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D GEM_2884 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D GEM_0805 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D GEM_0806 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D GEM_1349 cyclophilin type peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D GEM_3360 putative dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D GEM_5218 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D GEM_2666 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GEM_5191 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D GEM_2773 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D GEM_1510 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D GEM_1449 inosine 5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D GEM_3175 Tuf protein K02358 tuf; elongation factor Tu
D GEM_5754 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D GEM_3087 Histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D GEM_0471 Bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D GEM_1899 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_2236 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_2971 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_0871 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_5357 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D GEM_0857 selenium-binding protein K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4]
D GEM_4087 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4093 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0669 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1523 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_1636 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_4665 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D GEM_0181 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D GEM_0882 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D GEM_0657 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D GEM_1002 Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D GEM_5060 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D GEM_4814 dimethylargininase K01482 DDAH; dimethylargininase [EC:3.5.3.18]
D GEM_5632 phenylhydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D GEM_2707 fumarylacetoacetate hydrolase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D GEM_2506 fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D GEM_0759 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D GEM_3563 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_1258 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_1279 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_0450 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D GEM_3143 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D GEM_0232 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GEM_4236 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D GEM_0072 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D GEM_5330 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GEM_5331 putative alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GEM_0302 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GEM_3924 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D GEM_2832 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D GEM_2443 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D GEM_1923 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_1293 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D GEM_4118 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D GEM_2457 electron transfer flavoprotein alpha and beta-subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D GEM_4701 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D GEM_3968 electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit
D GEM_2853 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D GEM_2564 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D GEM_5781 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D GEM_1159 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D GEM_0582 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:bct02048]
D GEM_4802 DNA methylase N-4/N-6 domain-containing protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D GEM_0014 type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5]
D GEM_0015 Site-specific DNA-methyltransferase (adenine-specific) K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D GEM_4071 hnh endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D GEM_4044 putative class I holin K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D GEM_3065 atpase K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D GEM_3064 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D GEM_0249 HSP20-like protein K19048 symE; toxic protein SymE
D GEM_4241 transcriptional regulator/antitoxin, MazE K07172 mazE; antitoxin MazE
D GEM_3601 addiction module antitoxin K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D GEM_3602 prevent-host-death family protein K19159 yefM; antitoxin YefM
D GEM_4234 HipA domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D GEM_4233 transcriptional regulator, XRE family K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D GEM_0132 plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4
D GEM_3693 putative transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D GEM_0358 XRE family plasmid maintenance system antidote protein K21498 higA-1; antitoxin HigA-1
D GEM_4177 transcriptional regulator, XRE family protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D GEM_1768 PilT domain-containing protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D GEM_1769 SpoVT/AbrB-like protein K18829 mvpT; antitoxin VapB
D GEM_3653 twitching motility protein PilT K07062 fitB; toxin FitB [EC:3.1.-.-]
D GEM_4078 PilT protein domain protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D GEM_4016 hypothetical protein K21495 fitA; antitoxin FitA
D GEM_3652 Plasmid stability protein K21495 fitA; antitoxin FitA
D GEM_2954 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D GEM_0324 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D GEM_3505 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D GEM_1049 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D GEM_1048 DNA topoisomerase (ATP-hydrolyzing) K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D GEM_1378 GltX protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D GEM_4816 hypothetical protein K09159 cptB; antitoxin CptB
D GEM_5260 class V aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D GEM_1302 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:bct04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides [BR:bct04052]
D GEM_3578 nicotinate phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:bct04090]
C 01504 Antimicrobial resistance genes [BR:bct01504]
D GEM_3511 Beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D GEM_4335 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D GEM_5280 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D GEM_4334 two component heavy metal response transcriptional regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D GEM_5279 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D GEM_3969 hypothetical protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D GEM_0824 secretion protein HlyD K03585 acrA; membrane fusion protein, multidrug efflux system
D GEM_0825 RND family efflux system transporter protein K18138 acrB; multidrug efflux pump
D GEM_1791 RND efflux system outer membrane lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D GEM_0826 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D GEM_4857 RND efflux system, outer membrane lipoprotein, NodT K18139 oprM; outer membrane protein, multidrug efflux system
D GEM_3727 RND efflux system outer membrane lipoprotein K18300 oprN; outer membrane protein, multidrug efflux system
D GEM_1674 RND family efflux transporter MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system
D GEM_1673 acriflavin resistance protein K18303 mexK; multidrug efflux pump
D GEM_1794 TetR family transcriptional regulator K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor
D GEM_1793 efflux transporter, RND family, MFP subunit K18094 mexX; membrane fusion protein, multidrug efflux system
D GEM_1792 RND efflux system, inner membrane transporter CmeB K18095 mexY; multidrug efflux pump
D GEM_1199 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D GEM_5474 histidine kinase K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3]
D GEM_5473 two component transcriptional regulator K18144 adeR; two-component system, OmpR family, response regulator AdeR
D GEM_4858 two-component regulatory system response regulator protein K18144 adeR; two-component system, OmpR family, response regulator AdeR
D GEM_4855 multidrug efflux system transport protein K18145 adeA; membrane fusion protein, multidrug efflux system
D GEM_4856 hydrophobe/amphiphile efflux-1 (HAE1) family protein K18146 adeB; multidrug efflux pump
D GEM_0031 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D GEM_3753 outer membrane efflux protein K12340 tolC; outer membrane protein
D GEM_3640 DNA-binding response regulator, LuxR family K07690 evgA; two-component system, NarL family, response regulator EvgA
D GEM_5854 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D GEM_3850 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D GEM_5114 transcriptional regulator, LysR family K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D GEM_0780 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D GEM_5856 RND family efflux transporter MFP subunit K18901 bpeE; membrane fusion protein, multidrug efflux system
D GEM_5857 multidrug efflux system transporter protein CeoB K18902 bpeF; multidrug efflux pump
D GEM_5858 RND efflux system outer membrane lipoprotein K18903 oprC; outer membrane protein, multidrug efflux system
D GEM_4333 RND efflux system outer membrane lipoprotein K18903 oprC; outer membrane protein, multidrug efflux system
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:bct00537]
D GEM_5330 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GEM_5331 putative alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D GEM_3610 Alpha,alpha-trehalase K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28]
D GEM_3360 putative dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D GEM_5218 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:bct03100]
D GEM_1196 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GEM_1379 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GEM_0201 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D GEM_2133 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GEM_1044 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GEM_2523 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GEM_2525 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GEM_2524 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GEM_0142 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D GEM_2420 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D GEM_2421 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D GEM_1381 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GEM_1385 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GEM_1506 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GEM_1383 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D GEM_2371 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D GEM_0638 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D GEM_1380 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GEM_1382 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GEM_1384 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D GEM_2372 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GEM_2373 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GEM_2374 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GEM_2599 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D GEM_1860 tRNA-His K14226 tRNA-His; tRNA His
D GEM_1195 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D GEM_1161 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_1885 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_1888 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_1887 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_1491 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_0950 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_3440 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D GEM_0299 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D GEM_2736 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D GEM_0781 tRNA-Met K14230 tRNA-Met; tRNA Met
D GEM_4863 tRNA-Met K14230 tRNA-Met; tRNA Met
D GEM_1284 tRNA-Met K14230 tRNA-Met; tRNA Met
D GEM_1872 tRNA-Met K14230 tRNA-Met; tRNA Met
D GEM_1108 tRNA-Met K14230 tRNA-Met; tRNA Met
D GEM_0315 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D GEM_2144 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GEM_1947 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GEM_2940 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D GEM_2551 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GEM_2533 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GEM_1227 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GEM_1356 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D GEM_2507 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GEM_3076 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D GEM_3188 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D GEM_0246 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D GEM_1263 tRNA-Val K14237 tRNA-Val; tRNA Val
D GEM_1505 tRNA-Val K14237 tRNA-Val; tRNA Val
D GEM_0006 tRNA-Val K14237 tRNA-Val; tRNA Val
D GEM_1958 tRNA-Val K14237 tRNA-Val; tRNA Val
D GEM_4772 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D GEM_0243 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GEM_1194 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D GEM_0244 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GEM_1197 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D GEM_0245 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GEM_3189 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GEM_2973 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D GEM_1198 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D GEM_2882 short-chain dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D GEM_5540 aldo/keto reductase K05882 E1.1.1.91; aryl-alcohol dehydrogenase (NADP+) [EC:1.1.1.91]
D GEM_3397 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein K17735 lcdH; carnitine 3-dehydrogenase [EC:1.1.1.108]
D GEM_2191 3-hydroxyacyl-CoA dehydrogenase K17735 lcdH; carnitine 3-dehydrogenase [EC:1.1.1.108]
D GEM_5671 NAD-dependent epimerase/dehydratase K00091 E1.1.1.219; dihydroflavonol-4-reductase [EC:1.1.1.219]
D GEM_2879 zinc-containing alcohol dehydrogenase superfamily protein K00098 idnD; L-idonate 5-dehydrogenase [EC:1.1.1.264]
D GEM_5654 short chain dehydrogenase K16216 yueD; benzil reductase ((S)-benzoin forming) [EC:1.1.1.320]
D GEM_5776 DkgB protein K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D GEM_3293 NAD-dependent epimerase/dehydratase K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410]
D GEM_3298 3-hydroxyisobutyrate dehydrogenase K08319 ltnD; L-threonate 2-dehydrogenase [EC:1.1.1.411]
D GEM_0364 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D GEM_1585 pyruvate dehydrogenase (lipoamide) K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D GEM_1586 transketolase, central region K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D GEM_3393 polyvinylalcohol dehydrogenase K05889 pvadh; polyvinyl alcohol dehydrogenase (cytochrome) [EC:1.1.2.6]
D GEM_3833 glucose-methanol-choline oxidoreductase K23273 fdhL; fructose 5-dehydrogenase large subunit [EC:1.1.5.14]
D GEM_3832 hypothetical protein K23274 fdhS; fructose 5-dehydrogenase small subunit [EC:1.1.5.14]
D GEM_3904 hypothetical protein K23274 fdhS; fructose 5-dehydrogenase small subunit [EC:1.1.5.14]
D GEM_3933 aldo/keto reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D GEM_5141 Aldehyde Dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D GEM_0370 aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D GEM_0230 pyruvate ferredoxin/flavodoxin oxidoreductase K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
D GEM_0499 pyruvate ferredoxin/flavodoxin oxidoreductase K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
D GEM_4999 NADH:flavin oxidoreductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D GEM_2230 Alcohol dehydrogenase zinc-binding domain protein K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-]
D GEM_4225 alcohol dehydrogenase K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-]
D GEM_4428 Coenzyme PQQ biosynthesis protein C K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11]
D GEM_3622 2Fe-2S iron-sulfur cluster binding domain-containing protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D GEM_4223 2Fe-2S iron-sulfur cluster binding domain-containing protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D GEM_2113 (2Fe-2S)-binding protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D GEM_3621 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D GEM_4222 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D GEM_2112 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D GEM_3958 putative flavoprotein oxidoreductase K22551 hpbA; N-methyl-L-proline demethylase [EC:1.5.3.-]
D GEM_1967 electron-transferring-flavoprotein dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D GEM_4697 electron-transferring-flavoprotein dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D GEM_4687 zinc-binding alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GEM_1730 alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GEM_3810 alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GEM_2110 alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GEM_2239 zinc-containing alcohol dehydrogenase superfamily protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GEM_2250 NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GEM_1120 Alcohol dehydrogenase zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GEM_1158 alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GEM_4132 Alcohol dehydrogenase GroES domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GEM_1646 zinc-binding alcohol dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GEM_5449 PIG3 family NAD(P)H quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D GEM_4688 2-nitropropane dioxygenase K23948 E1.6.5.9; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D GEM_2997 Acyl carrier protein phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D GEM_4530 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D GEM_3234 putative cytochrome c K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2]
D GEM_0858 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D GEM_1518 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D GEM_1183 glutathione S-transferase domain-containing protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D GEM_1734 Glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D GEM_3138 putative sulfite oxidase subunit YedY K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D GEM_4287 di-heme cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D GEM_2028 Di-heme cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D GEM_1560 alkyl hydroperoxide reductase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D GEM_2325 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D GEM_2920 redoxin domain-containing protein K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D GEM_2716 Alkyl hydroperoxide reductase subunit C-like protein K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D GEM_4529 Alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D GEM_1701 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D GEM_4888 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D GEM_2977 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D GEM_1483 Carboxymuconolactone decarboxylase K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28]
D GEM_1484 Alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28]
D GEM_4951 Dyp-type peroxidase family protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D GEM_1025 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D GEM_1213 pirin domain-containing protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D GEM_2361 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D GEM_4361 cysteine dioxygenase type I K24700 mdo; 3-mercaptopropionate dioxygenase [EC:1.13.11.91]
D GEM_4621 taurine dioxygenase K22303 atsK; alkyl sulfatase [EC:1.14.11.77]
D GEM_4620 Taurine dioxygenase K22303 atsK; alkyl sulfatase [EC:1.14.11.77]
D GEM_2789 globin K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D GEM_1773 lysine/ornithine N-monooxygenase K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196]
D GEM_5867 flavin-dependent oxidoreductase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D GEM_3844 flavin-dependent oxidoreductase-like protein K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28]
D GEM_5275 multicopper oxidase type 3 K22348 moxA; manganese oxidase [EC:1.16.3.3]
D GEM_5580 amine oxidase K21677 hpnE; hydroxysqualene dehydroxylase [EC:1.17.8.1]
D GEM_0388 ferredoxin-NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D GEM_5569 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D GEM_4430 pyrroloquinoline quinone biosynthesis protein PqqE K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4]
D GEM_1604 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D GEM_2612 protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D GEM_0860 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D GEM_5122 GCN5-related N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D GEM_3788 arylamine N-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118]
D GEM_0747 Apolipoprotein N-acyltransferase / Copper homeostasis protein CutE K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D GEM_1514 GCN5-related N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D GEM_2367 GCN5-related N-acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D GEM_1874 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D GEM_1875 arginyl-tRNA-protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D GEM_0203 group 1 glycosyl transferase K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]
D GEM_2181 triphosphoribosyl-dephospho-CoA synthase MdcB K13930 mdcB; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D GEM_5579 squalene synthase HpnD K21678 hpnD; presqualene diphosphate synthase [EC:2.5.1.103]
D GEM_0968 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D GEM_3297 Hrp-dependent type III effector protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D GEM_1437 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D GEM_2782 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D GEM_0642 RNA-directed DNA polymerase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D GEM_2182 phosphoribosyl-dephospho-transferase K13934 mdcG; phosphoribosyl-dephospho-CoA transferase [EC:2.7.7.66]
D GEM_1519 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D GEM_4212 serine/threonine protein kinase K08282 E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1]
D GEM_0511 bifunctional isocitrate dehydrogenase kinase/phosphatase protein K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D GEM_0647 HPr Serine kinase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D GEM_1717 l-carnitine dehydratase bile acid-inducible protein f K18313 sct; succinyl-CoA---D-citramalate CoA-transferase [EC:2.8.3.20]
D GEM_1602 L-carnitine dehydratase/bile acid-inducible protein F K18313 sct; succinyl-CoA---D-citramalate CoA-transferase [EC:2.8.3.20]
D GEM_0587 Appr-1-p processing domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D GEM_3325 alpha/beta hydrolase fold protein K19311 lipV; lipase [EC:3.1.1.-]
D GEM_3710 hypothetical protein K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29]
D GEM_3705 hypothetical protein K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29]
D GEM_4568 putative 3-hydroxyacyl-CoA dehydrogenase protein K27492 cdhB; betainyl-CoA thioesterase [EC:3.1.2.33]
D GEM_3398 thioesterase-like protein K27492 cdhB; betainyl-CoA thioesterase [EC:3.1.2.33]
D GEM_2729 tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D GEM_1965 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D GEM_2017 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D GEM_1328 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D GEM_2143 phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D GEM_5429 diguanylate phosphodiesterase K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D GEM_3372 choline-sulfatase K01133 betC; choline-sulfatase [EC:3.1.6.6]
D GEM_1534 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D GEM_1316 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D GEM_2049 Cellulase K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D GEM_4069 lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D GEM_3586 Lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D GEM_0702 N-acyl-D-amino-acid deacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D GEM_1417 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D GEM_0307 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D GEM_2060 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K18540 ramA; (R)-amidase [EC:3.5.1.100]
D GEM_0676 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D GEM_2784 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D GEM_1468 hydroxydechloroatrazine ethylaminohydrolase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32]
D GEM_1266 Endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D GEM_2995 adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25]
D GEM_2402 septum formation protein Maf K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D GEM_5144 protein tyrosine phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2]
D GEM_5137 protein of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D GEM_2023 putative hydrolase K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D GEM_1726 protein of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D GEM_0484 protein of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D GEM_5396 amidohydrolase 2 K22213 PATG; 6-methylsalicylate decarboxylase [EC:4.1.1.52]
D GEM_2184 malonate decarboxylase, beta subunit K13932 mdcD; malonate decarboxylase beta subunit [EC:4.1.1.87]
D GEM_2183 malonate decarboxylase subunit gamma K13933 mdcE; malonate decarboxylase gamma subunit [EC:4.1.1.87]
D GEM_3296 putative aldolase K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]
D GEM_3978 altronate dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5]
D GEM_5111 mandelate racemase/muconate lactonizing protein K22209 tarD; D(-)-tartrate dehydratase [EC:4.2.1.81]
D GEM_1511 carbohydrate kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D GEM_5627 diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15]
D GEM_4136 Pyridoxal-5'-phosphate-dependent protein beta subunit K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16]
D GEM_5885 RbsD or FucU transport K02431 fucU; L-fucose mutarotase [EC:5.1.3.29]
D GEM_3294 Hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D GEM_0110 AMP-dependent synthetase and ligase K12508 fcs; feruloyl-CoA synthase [EC:6.2.1.34]
D GEM_5616 AMP-dependent synthetase and ligase K12508 fcs; feruloyl-CoA synthase [EC:6.2.1.34]
D GEM_2912 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D GEM_1080 ferredoxin K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D GEM_0117 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D GEM_3895 magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D GEM_2003 Glyceraldehyde-3-phosphate ketol-isomerase K06605 iolH; myo-inositol catabolism protein IolH
D GEM_0690 protein of unknown function DUF224 cysteine-rich region domain protein K18928 lldE; L-lactate dehydrogenase complex protein LldE
D GEM_1297 protein of unknown function DUF224 cysteine-rich region domain protein K18928 lldE; L-lactate dehydrogenase complex protein LldE
D GEM_0688 Iron-sulfur cluster binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D GEM_1298 4Fe-4S ferredoxin K18929 lldF; L-lactate dehydrogenase complex protein LldF
D GEM_0689 hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
D GEM_2417 protein of unknown function DUF162 K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D GEM_0729 Formate dehydrogenase, subunit FdhD K02379 fdhD; FdhD protein
D GEM_2419 4Fe-4S ferredoxin K05524 fdxA; ferredoxin
D GEM_1303 FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D GEM_4117 electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit
D GEM_2458 Electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit
D GEM_4700 electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit
D GEM_3967 electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit
D GEM_1470 hypothetical protein K09165 K09165; dodecin
D GEM_3834 cytochrome c, class I K23275 fdhC; fructose 5-dehydrogenase cytochrome subunit
C 99983 Lipid metabolism
D GEM_0111 acyl-CoA dehydrogenase domain-containing protein K09456 aidB; putative acyl-CoA dehydrogenase
D GEM_2895 hypothetical protein K21830 pchP; phosphorylcholine phosphatase
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D GEM_0275 Glyoxalase/bleomycin resistance protein/dioxygenase K08234 yaeR; glyoxylase I family protein
D GEM_2796 alanine racemase domain protein K06997 yggS; PLP dependent protein
D GEM_3598 GCN5-related N-acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D GEM_2471 transmembrane protein K08992 lapA; lipopolysaccharide assembly protein A
D GEM_2470 Heat shock (putative periplasmic) protein YciM,precursor K19804 lapB; lipopolysaccharide assembly protein B
D GEM_4531 hypothetical protein K21687 rpfA; resuscitation-promoting factor RpfA
D GEM_3292 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
D GEM_2050 cellulose synthase regulator protein K20541 bcsB; cellulose synthase operon protein B
C 99987 Cofactor metabolism
D GEM_1758 cobalamin biosynthesis protein K02234 cobW; cobalamin biosynthesis protein CobW
D GEM_1008 HemY domain protein K02498 hemY; HemY protein
D GEM_0712 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D GEM_0711 Sterol-binding domain protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D GEM_0572 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D GEM_1755 Mg-chelatase subunit ChlD-like protein K13580 K13580; magnesium chelatase subunit ChlD-like protein
C 99988 Secondary metabolism
D GEM_5572 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
D GEM_5102 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D GEM_4967 Glyoxalase family protein K15975 K15975; glyoxalase family protein
D GEM_5886 DoxX family protein K15977 K15977; putative oxidoreductase
D GEM_0985 DoxX family protein K15977 K15977; putative oxidoreductase
D GEM_5496 DoxX K15977 K15977; putative oxidoreductase
D GEM_2100 DoxX K15977 K15977; putative oxidoreductase
D GEM_3907 Surfeit locus 4-related protein K15977 K15977; putative oxidoreductase
D GEM_4966 Phospholipase/Carboxylesterase K06999 K06999; phospholipase/carboxylesterase
D GEM_4570 phospholipase/carboxylesterase K06999 K06999; phospholipase/carboxylesterase
D GEM_5698 GCN5-related N-acetyltransferase K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D GEM_4097 Cold shock protein K03704 cspA; cold shock protein
D GEM_5516 cold-shock DNA-binding domain-containing protein K03704 cspA; cold shock protein
D GEM_2519 cold-shock protein CspD K03704 cspA; cold shock protein
D GEM_0910 cold-shock DNA-binding protein family protein K03704 cspA; cold shock protein
D GEM_3494 cold-shock DNA-binding domain-containing protein K03704 cspA; cold shock protein
D GEM_3021 cold-shock DNA-binding protein family protein K03704 cspA; cold shock protein
D GEM_0573 Nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D GEM_1628 RNA-binding S1 domain-containing protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D GEM_0911 ClpS protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D GEM_1501 trigger factor K03545 tig; trigger factor
D GEM_3137 Ferric reductase K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D GEM_4775 Formate dehydrogenase formation protein FdhE K02380 fdhE; FdhE protein
D GEM_2624 UreE protein K03187 ureE; urease accessory protein
D GEM_2625 urease accessory protein UreF K03188 ureF; urease accessory protein
D GEM_2626 urease accessory protein UreG K03189 ureG; urease accessory protein
D GEM_2620 UreD-family accessory protein K03190 ureD; urease accessory protein
D GEM_1441 SsrA-binding protein K03664 smpB; SsrA-binding protein
D GEM_0571 Mg chelatase-like protein K07391 comM; magnesium chelatase family protein
D GEM_4950 hypothetical protein K07397 yhfA; putative redox protein
D GEM_2845 OsmC/Ohr family protein K07397 yhfA; putative redox protein
D GEM_2040 OsmC-like protein K07397 yhfA; putative redox protein
D GEM_3140 ResB family protein K07399 resB; cytochrome c biogenesis protein
D GEM_2500 xanthine dehydrogenase accessory protein XdhC K07402 xdhC; xanthine dehydrogenase accessory factor
D GEM_0384 protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor
D GEM_2695 xanthine dehydrogenase accessory protein XdhC K07402 xdhC; xanthine dehydrogenase accessory factor
D GEM_3466 membrane-bound serine protease K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D GEM_4077 hypothetical protein K07454 K07454; putative restriction endonuclease
D GEM_0929 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D GEM_2414 Fis family transcriptional regulator K09760 rmuC; DNA recombination protein RmuC
D GEM_0197 protein of unknown function UPF0102 K07460 yraN; putative endonuclease
D GEM_1014 Excinuclease ABC C subunit domain protein K07461 K07461; putative endonuclease
D GEM_0306 DNA protecting protein DprA K04096 smf; DNA processing protein
D GEM_2554 AAA ATPase central domain protein K07478 ycaJ; putative ATPase
D GEM_3059 DNA-invertase hin K14060 pinR; putative DNA-invertase from lambdoid prophage Rac
D GEM_3053 primase K06919 K06919; putative DNA primase/helicase
D GEM_1607 3'-5' exonuclease K07501 K07501; 3'-5' exonuclease
D GEM_3060 transposase IS3/IS911 family protein K07483 K07483; transposase
D GEM_1260 putative transposase K07483 K07483; transposase
D GEM_5830 IS66 Orf2 family protein K07484 K07484; transposase
D GEM_3061 Transposase K07484 K07484; transposase
D GEM_3062 Transposase K07484 K07484; transposase
D GEM_5831 ISAfe4, transposase K07484 K07484; transposase
D GEM_4733 transposase K07486 K07486; transposase
D GEM_5837 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase
D GEM_2795 transposase K07486 K07486; transposase
D GEM_3120 transposase K07491 rayT; REP-associated tyrosine transposase
D GEM_1940 hypothetical protein K07492 K07492; putative transposase
D GEM_3993 IS605 family transposase OrfB K07496 K07496; putative transposase
D GEM_0248 transposase K07497 K07497; putative transposase
D GEM_2132 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D GEM_0247 transposase K07497 K07497; putative transposase
D GEM_0250 Transposase K07497 K07497; putative transposase
D GEM_2131 insertion element protein K07497 K07497; putative transposase
D GEM_0251 transposase B K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D GEM_1475 phage shock protein A, PspA K03969 pspA; phage shock protein A
D GEM_1600 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D GEM_3215 porin Gram-negative type K03285 TC.GBP; general bacterial porin, GBP family
D GEM_5047 outer membrane protein (porin) K03285 TC.GBP; general bacterial porin, GBP family
D GEM_4293 porin K03285 TC.GBP; general bacterial porin, GBP family
D GEM_5127 outer membrane protein (porin) K03285 TC.GBP; general bacterial porin, GBP family
D GEM_4187 porin Gram-negative type K03285 TC.GBP; general bacterial porin, GBP family
D GEM_5642 amino acid transporter K03293 TC.AAT; amino acid transporter, AAT family
D GEM_4751 amino acid permease-associated region K03293 TC.AAT; amino acid transporter, AAT family
D GEM_4259 amino acid permease family protein K03293 TC.AAT; amino acid transporter, AAT family
D GEM_0913 amino acid transporter K03293 TC.AAT; amino acid transporter, AAT family
D GEM_0385 amino acid permease-associated region K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D GEM_2063 CitMHS family citrate/H+ symporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D GEM_1748 CitMHS family citrate/H+ symporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D GEM_5676 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D GEM_3192 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D GEM_1557 putative integral membrane transport protein K03306 TC.PIT; inorganic phosphate transporter, PiT family
D GEM_3715 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D GEM_1069 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D GEM_5125 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D GEM_3115 sodium:amino acid symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D GEM_4594 putative cytosine/purine, uracil, thiamine, allantoin permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D GEM_1459 Hydantoin permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D GEM_2206 cytosine/purines uracil thiamine allantoin permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D GEM_2631 polysaccharide biosynthesis protein K03328 TC.PST; polysaccharide transporter, PST family
D GEM_4425 polysaccharide biosynthesis protein K03328 TC.PST; polysaccharide transporter, PST family
C 99978 Cell growth
D GEM_1517 intracellular septation protein A K06190 ispZ; intracellular septation protein
D GEM_1807 Stage V sporulation protein involved in spore cortex synthesis (SpoVR) K06415 spoVR; stage V sporulation protein R
C 99993 Cell motility
D GEM_0025 putative fimbrial chaperone protein K15540 ecpD; chaperone protein EcpD
D GEM_0341 chaperone protein FimC K15540 ecpD; chaperone protein EcpD
D GEM_3863 Chaperone protein fimC precursor K15540 ecpD; chaperone protein EcpD
C 99995 Signaling proteins
D GEM_5658 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D GEM_1926 GTP-binding protein TypA K06207 typA; GTP-binding protein
D GEM_3916 CBS domain containing membrane protein K07168 K07168; CBS domain-containing membrane protein
D GEM_4219 FHA domain-containing protein K07169 K07169; FHA domain-containing protein
D GEM_0752 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D GEM_1559 Putative ATPase related to phosphate starvation-inducible protein PhoH K07175 phoH2; PhoH-like ATPase
D GEM_1809 putative serine protein kinase PrkA K07180 prkA; serine protein kinase
D GEM_0874 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D GEM_2555 outer-membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D GEM_0640 Outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D GEM_5583 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D GEM_3105 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D GEM_2922 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB
D GEM_1430 outer membrane chaperone Skp K06142 hlpA; outer membrane protein
D GEM_1605 peptidase M23B K06194 nlpD; lipoprotein NlpD
D GEM_3856 peptidase M23 K06194 nlpD; lipoprotein NlpD
D GEM_4843 peptidase M23B K06194 nlpD; lipoprotein NlpD
D GEM_2746 Capsule polysaccharide biosynthesis protein K07265 kpsS; capsular polysaccharide export protein
D GEM_2747 Capsule polysaccharide biosynthesis protein K07266 kpsC; capsular polysaccharide export protein
D GEM_3339 OmpW family protein K07275 ompW; outer membrane protein
D GEM_0222 OmpW family protein K07275 ompW; outer membrane protein
D GEM_1660 OmpW family protein K07275 ompW; outer membrane protein
D GEM_3121 OmpW family protein K07275 ompW; outer membrane protein
D GEM_1651 hypothetical protein K07290 yhjG; AsmA family protein
D GEM_4352 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein
D GEM_2024 hypothetical protein K04062 osmB; osmotically inducible lipoprotein OsmB
D GEM_2269 hypothetical protein K04062 osmB; osmotically inducible lipoprotein OsmB
D GEM_4339 putative lipoprotein K04064 osmE; osmotically inducible lipoprotein OsmE
D GEM_1613 XRE family transcriptional regulator K15539 rodZ; cytoskeleton protein RodZ
D GEM_5432 hypothetical protein K21695 aaeX; protein AaeX
C 99994 Others
D GEM_2150 phosphate uptake regulator PhoU K02039 phoU; phosphate transport system protein
D GEM_1218 BFD/(2Fe-2S)-binding domain-containing protein K02192 bfd; bacterioferritin-associated ferredoxin
D GEM_3145 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D GEM_0502 CutC family protein K06201 cutC; copper homeostasis protein
D GEM_2988 ApaG protein K06195 apaG; ApaG protein
D GEM_3135 CyaY protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D GEM_1340 FAD dependent oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport
B
B 09194 Poorly characterized
C 99996 General function prediction only
D GEM_4797 colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D GEM_3557 paraquat-inducible protein B K06192 pqiB; paraquat-inducible protein B
D GEM_2816 Mammalian cell entry related domain protein K06192 pqiB; paraquat-inducible protein B
D GEM_2360 acetyltransferase (GNAT) family protein K02348 elaA; ElaA protein
D GEM_4412 acyltransferase-like protein K02348 elaA; ElaA protein
D GEM_4119 transferase hexapeptide repeat containing protein K02617 paaY; phenylacetic acid degradation protein
D GEM_2240 transport-associated domain protein K04065 osmY; hyperosmotically inducible periplasmic protein
D GEM_4961 putative periplasmic or secreted lipoprotein K04065 osmY; hyperosmotically inducible periplasmic protein
D GEM_2690 transport-associated protein K04065 osmY; hyperosmotically inducible periplasmic protein
D GEM_4485 Helix-hairpin-helix DNA-binding class 1 K04477 ycdX; putative hydrolase
D GEM_4427 coenzyme PQQ synthesis protein B K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B
D GEM_4429 pyrroloquinoline quinone biosynthesis protein PqqD K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D
D GEM_1575 globin K06886 glbN; hemoglobin
D GEM_1132 globin K06886 glbN; hemoglobin
D GEM_0528 Patatin K07001 K07001; NTE family protein
D GEM_5550 Patatin K07001 K07001; NTE family protein
D GEM_3712 patatin K07001 K07001; NTE family protein
D GEM_5194 patatin K07001 K07001; NTE family protein
D GEM_3504 putative patatin-like phospholipase K07001 K07001; NTE family protein
D GEM_1377 Patatin K07001 K07001; NTE family protein
D GEM_2842 iron-sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein
D GEM_1976 ribonuclease BN K07058 K07058; membrane protein
D GEM_4780 ribonuclease BN K07058 K07058; membrane protein
D GEM_2178 phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase
D GEM_1092 rhodanese superfamily protein K07146 K07146; UPF0176 protein
D GEM_1070 glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein K04750 phnB; PhnB protein
D GEM_5119 glyoxalase/bleomycin resistance protein/dioxygenase K04750 phnB; PhnB protein
D GEM_1838 Glyoxalase/bleomycin resistance protein/dioxygenase K04750 phnB; PhnB protein
D GEM_5591 protein of unknown function DUF336 K11477 glcG; glc operon protein GlcG
D GEM_3835 hypothetical protein K11477 glcG; glc operon protein GlcG
D GEM_5027 General secretory system II protein E domain protein K11740 nfrB; bacteriophage N4 adsorption protein B
D GEM_1779 ferric iron reductase K13255 fhuF; ferric iron reductase protein FhuF
D GEM_2359 membrane protein K02351 K02351; putative membrane protein
D GEM_2422 CreA family protein K05805 creA; CreA protein
D GEM_4798 sporulation domain-containing protein K03749 dedD; DedD protein
D GEM_2761 DedA protein K03975 dedA; membrane-associated protein
D GEM_3555 hypothetical protein K03808 pqiA; paraquat-inducible protein A
D GEM_3556 paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D GEM_2814 paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D GEM_2815 paraquat-inducible protein a K03808 pqiA; paraquat-inducible protein A
D GEM_0182 membrane protein K08972 K08972; putative membrane protein
D GEM_2351 membrane protein K08983 K08983; putative membrane protein
D GEM_3570 hypothetical protein K08989 K08989; putative membrane protein
D GEM_5511 hypothetical protein K08995 K08995; putative membrane protein
D GEM_4252 hypothetical protein K08995 K08995; putative membrane protein
D GEM_3599 putative exported protein K08995 K08995; putative membrane protein
D GEM_0508 hypothetical protein K09858 K09858; SEC-C motif domain protein
D GEM_3838 cupin K11312 K11312; cupin 2 domain-containing protein
C 99997 Function unknown
D GEM_4198 Ankyrin K06867 K06867; uncharacterized protein
D GEM_5648 ankyrin repeat-containing protein K06867 K06867; uncharacterized protein
D GEM_1535 ankyrin K06867 K06867; uncharacterized protein
D GEM_5081 hypothetical protein K06871 K06871; uncharacterized protein
D GEM_4208 hypothetical protein K06887 K06887; uncharacterized protein
D GEM_5304 hypothetical protein K06893 K06893; uncharacterized protein
D GEM_2948 atp gtp-binding protein K06923 K06923; uncharacterized protein
D GEM_3781 protein of unknown function DUF296 K06934 K06934; uncharacterized protein
D GEM_5497 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein
D GEM_1661 fe-s protein K06938 K06938; uncharacterized protein
D GEM_0479 fe-s protein K06938 K06938; uncharacterized protein
D GEM_2609 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D GEM_2927 hypothetical protein K06950 K06950; uncharacterized protein
D GEM_4178 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein
D GEM_4549 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein
D GEM_5766 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein
D GEM_0483 Glyoxalase/bleomycin resistance protein/dioxygenase K06991 K06991; uncharacterized protein
D GEM_2598 hypothetical protein K06995 K06995; uncharacterized protein
D GEM_5300 hypothetical protein K06995 K06995; uncharacterized protein
D GEM_2820 glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein
D GEM_2911 hypothetical protein K07000 K07000; uncharacterized protein
D GEM_4095 RND efflux transporter K07003 K07003; uncharacterized protein
D GEM_5464 RND efflux transporter K07003 K07003; uncharacterized protein
D GEM_5584 RND efflux transporter K07003 K07003; uncharacterized protein
D GEM_5271 Endonuclease/exonuclease/phosphatase K07004 K07004; uncharacterized protein
D GEM_4939 Endonuclease/exonuclease/phosphatase K07004 K07004; uncharacterized protein
D GEM_5091 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein K07006 K07006; uncharacterized protein
D GEM_0124 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein K07006 K07006; uncharacterized protein
D GEM_0126 hypothetical protein K07006 K07006; uncharacterized protein
D GEM_0542 Alpha/beta hydrolase K07018 K07018; uncharacterized protein
D GEM_0798 alpha/beta hydrolase fold protein K07019 K07019; uncharacterized protein
D GEM_4936 Glyoxalase/bleomycin resistance protein/dioxygenase K07032 K07032; uncharacterized protein
D GEM_3434 glyoxalase/bleomycin resistance protein/dioxygenase K07032 K07032; uncharacterized protein
D GEM_4914 metal-dependent hydrolase-like protein K07044 K07044; uncharacterized protein
D GEM_3800 metal-dependent hydrolase K07044 K07044; uncharacterized protein
D GEM_3460 metal-dependent hydrolase K07044 K07044; uncharacterized protein
D GEM_3680 hypothetical protein K07054 K07054; uncharacterized protein
D GEM_5750 hypothetical protein K07071 K07071; uncharacterized protein
D GEM_1828 permease K07089 K07089; uncharacterized protein
D GEM_2687 sulfate permease K07090 K07090; uncharacterized protein
D GEM_3534 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D GEM_1666 transmembrane protein K07090 K07090; uncharacterized protein
D GEM_3852 hypothetical protein K07090 K07090; uncharacterized protein
D GEM_3985 hypothetical protein K07090 K07090; uncharacterized protein
D GEM_2289 phosphatase-like protein K07093 K07093; uncharacterized protein
D GEM_3757 metallophosphoesterase K07098 K07098; uncharacterized protein
D GEM_1626 phosphoribosyltransferase K07101 K07101; uncharacterized protein
D GEM_4465 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D GEM_4466 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D GEM_0068 nuclear protein SET K07117 K07117; uncharacterized protein
D GEM_2284 NAD-dependent epimerase/dehydratase K07118 K07118; uncharacterized protein
D GEM_4318 short-chain dehydrogenase/reductase SDR K07124 K07124; uncharacterized protein
D GEM_5351 putative lipoprotein K07126 K07126; uncharacterized protein
D GEM_0320 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein
D GEM_1343 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K07137 K07137; uncharacterized protein
D GEM_4371 MOSC domain protein beta barrel domain protein K07140 K07140; MOSC domain-containing protein
D GEM_0645 peptidase S16, lon domain-containing protein K07157 K07157; uncharacterized protein
D GEM_0904 hypothetical protein K09005 K09005; uncharacterized protein
D GEM_4866 GatB/Yqey domain-containing protein K09117 K09117; uncharacterized protein
D GEM_0218 protein of unknown function DUF82 K09122 K09122; uncharacterized protein
D GEM_1694 protein of unknown function DUF355 K09129 K09129; uncharacterized protein
D GEM_2583 hypothetical protein K09137 K09137; uncharacterized protein
D GEM_0545 putative lipoate regulatory protein K09158 K09158; uncharacterized protein
D GEM_0820 carbon monoxide dehydrogenase subunit G K09386 K09386; uncharacterized protein
D GEM_4261 hypothetical protein K09705 K09705; uncharacterized protein
D GEM_1128 protein of unknown function DUF333 K09712 K09712; uncharacterized protein
D GEM_1754 hypothetical protein K09768 K09768; uncharacterized protein
D GEM_1693 YciI-like protein K09780 K09780; uncharacterized protein
D GEM_5251 YCII-related protein K09780 K09780; uncharacterized protein
D GEM_1808 hypothetical protein K09786 K09786; uncharacterized protein
D GEM_0884 protein in kdo2-lipid a biosynthesis cluster K09791 K09791; uncharacterized protein
D GEM_1443 hypothetical protein K09801 K09801; uncharacterized protein
D GEM_3558 putative lipoprotein K09857 K09857; uncharacterized protein
D GEM_2817 hypothetical protein K09857 K09857; uncharacterized protein
D GEM_1188 hypothetical protein K09861 K09861; uncharacterized protein
D GEM_5655 protein of unknown function DUF480 K09915 K09915; uncharacterized protein
D GEM_1015 protein of unknown function DUF482 K09919 K09919; uncharacterized protein
D GEM_0356 protein of unknown function DUF484 K09921 K09921; uncharacterized protein
D GEM_1105 protein of unknown function DUF469 K09923 K09923; uncharacterized protein
D GEM_2479 signal peptide protein K09924 K09924; uncharacterized protein
D GEM_3608 protein of unknown function DUF1006 K09927 K09927; uncharacterized protein
D GEM_5494 hypothetical protein K09930 K09930; uncharacterized protein
D GEM_1623 inner membrane protein K09937 K09937; uncharacterized protein
D GEM_0383 PepSY-associated TM helix domain protein K09939 K09939; uncharacterized protein
D GEM_3026 protein of unknown function DUF1415 K09941 K09941; uncharacterized protein
D GEM_4625 hypothetical protein K09957 K09957; uncharacterized protein
D GEM_3798 hypothetical protein K09957 K09957; uncharacterized protein
D GEM_5556 hypothetical protein K09958 K09958; uncharacterized protein
D GEM_1465 hypothetical protein K09964 K09964; uncharacterized protein
D GEM_0211 hypothetical protein K09965 K09965; uncharacterized protein
D GEM_0402 GumN protein K09973 K09973; uncharacterized protein
D GEM_4699 hypothetical protein K09975 K09975; uncharacterized protein
D GEM_1253 hypothetical protein K09975 K09975; uncharacterized protein
D GEM_1399 hypothetical protein K09977 K09977; uncharacterized protein
D GEM_2194 hypothetical protein K09981 K09981; uncharacterized protein
D GEM_2572 hypothetical protein K09983 K09983; uncharacterized protein
D GEM_1753 hypothetical protein K09983 K09983; uncharacterized protein
D GEM_0773 hypothetical protein K09984 K09984; uncharacterized protein
D GEM_1073 vwa containing family protein K09989 K09989; uncharacterized protein
D GEM_3191 hypothetical protein K09990 K09990; uncharacterized protein
D GEM_1556 phosphate transport regulator K07220 K07220; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 19, 2024