+F Repair protein KO
#
DNA Repair and Recombination Proteins - Botrytis cinerea (gray mold)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BCIN_16g04120 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BCIN_05g08060 Bccry1; Bccry1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BCIN_05g06460 Bcung1; Bcung1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BCIN_05g00430 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E BCIN_01g10360 hypothetical protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E BCIN_06g05820 Bcogg1; Bcogg1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E BCIN_14g01440 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BCIN_03g08450 Bcapn1; Bcapn1 K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E BCIN_01g02130 Bcapn2; Bcapn2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F BCIN_08g05510 Bcpol3; Bcpol3 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F BCIN_05g03940 Bcpol31 K02328 POLD2; DNA polymerase delta subunit 2
F BCIN_12g01680 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
F BCIN_13g02450 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F BCIN_02g07590 hypothetical protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F BCIN_09g03030 Bcdpb2; Bcdpb2 K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F BCIN_11g03470 hypothetical protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E BCIN_01g06320 Bcpol30 K04802 PCNA; proliferating cell nuclear antigen
E BCIN_02g04900 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E BCIN_13g00240 Bccdc9; Bccdc9 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E BCIN_03g08250 hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E BCIN_08g06920 Bchnt3; Bchnt3 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E BCIN_04g01720 Bctpp1; Bctpp1 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F BCIN_13g03060 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F BCIN_12g05540 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F BCIN_10g05180 Bcrad23 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F BCIN_03g07500 Bchrt1; Bchrt1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F BCIN_08g03360 hypothetical protein K10609 CUL4; cullin 4
F BCIN_12g03580 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F BCIN_06g06930 Bcrad7; Bcrad7 K15082 RAD7; DNA repair protein RAD7
F BCIN_06g06920 Bcrad16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F BCIN_05g01420 Bcrpo21 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F BCIN_07g01790 hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F BCIN_14g01590 Bcrpb2; Bcrpb2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F BCIN_09g02810 Bcrpb3; Bcrpb3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F BCIN_15g00340 Bcrpb4; Bcrpb4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F BCIN_06g07270 Bcrpb5; Bcrpb5 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F BCIN_10g02330 Bcrpo26 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F BCIN_15g01820 Bcrpb7; Bcrpb7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F BCIN_12g02760 Bcrpb8; Bcrpb8 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F BCIN_16g03710 Bcrpb9; Bcrpb9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F BCIN_05g02320 Bcrpb10 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F BCIN_05g03980 Bcrpb11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F BCIN_11g04480 Bcrpc10 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F BCIN_03g07500 Bchrt1; Bchrt1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F BCIN_08g03360 hypothetical protein K10609 CUL4; cullin 4
F BCIN_12g03580 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
F BCIN_09g02580 Bcrad28 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F BCIN_03g06920 Bcrad26 K10841 ERCC6; DNA excision repair protein ERCC-6
F BCIN_03g06210 Bcelf1; Bcelf1 K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E BCIN_15g02700 Bcssl2; Bcssl2 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E BCIN_13g04400 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E BCIN_05g01350 Bctfb1; Bctfb1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E BCIN_15g03450 Bcssl1; Bcssl1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E BCIN_13g05550 Bctfb4; Bctfb4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E BCIN_01g08930 Bctfb2; Bctfb2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E BCIN_14g02910 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E BCIN_05g03490 Bckin28 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E BCIN_10g02090 Bcccl1; Bcccl1 K06634 CCNH; cyclin H
E BCIN_01g08420 Bctfb3; Bctfb3 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E BCIN_04g00240 Bcrfa1; Bcrfa1 K07466 RFA1; replication factor A1
E BCIN_12g01760 Bcrfa2; Bcrfa2 K10739 RFA2; replication factor A2
E BCIN_08g03190 hypothetical protein K10740 RPA3; replication factor A3
D Other NER factors
E BCIN_07g02310 Bcrad14 K10847 XPA; DNA-repair protein complementing XP-A cells
E BCIN_11g00250 Bcrad10 K10849 ERCC1; DNA excision repair protein ERCC-1
E BCIN_09g06220 Bcrad1; Bcrad1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E BCIN_06g00590 hypothetical protein K10846 ERCC5; DNA excision repair protein ERCC-5
E BCIN_13g00240 Bccdc9; Bccdc9 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E BCIN_15g01610 Bcmet18 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E BCIN_03g08660 hypothetical protein K03869 CUL3; cullin 3
E BCIN_13g02530 Bcelc1; Bcelc1 K03872 ELOC; elongin-C
E BCIN_07g02700 hypothetical protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BCIN_02g08740 Bcmsh2; Bcmsh2 K08735 MSH2; DNA mismatch repair protein MSH2
E BCIN_06g05300 Bcmsh3; Bcmsh3 K08736 MSH3; DNA mismatch repair protein MSH3
E BCIN_01g04490 Bcmsh6; Bcmsh6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E BCIN_12g03140 Bcmlh1; Bcmlh1 K08734 MLH1; DNA mismatch repair protein MLH1
E BCIN_07g06560 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
E BCIN_04g06170 Bcmlh3; Bcmlh3 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E BCIN_08g05510 Bcpol3; Bcpol3 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E BCIN_05g03940 Bcpol31 K02328 POLD2; DNA polymerase delta subunit 2
E BCIN_12g01680 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
E BCIN_13g02450 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E BCIN_04g00240 Bcrfa1; Bcrfa1 K07466 RFA1; replication factor A1
E BCIN_12g01760 Bcrfa2; Bcrfa2 K10739 RFA2; replication factor A2
E BCIN_08g03190 hypothetical protein K10740 RPA3; replication factor A3
D RFC (replication factor C)
E BCIN_14g02930 Bcrfc1; Bcrfc1 K10754 RFC1; replication factor C subunit 1
E BCIN_03g04190 Bcrfc4; Bcrfc4 K10755 RFC2_4; replication factor C subunit 2/4
E BCIN_01g05360 Bcrfc2; Bcrfc2 K10755 RFC2_4; replication factor C subunit 2/4
E BCIN_02g00920 Bcrfc3; Bcrfc3 K10756 RFC3_5; replication factor C subunit 3/5
E BCIN_14g01800 Bcrfc5; Bcrfc5 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E BCIN_01g06320 Bcpol30 K04802 PCNA; proliferating cell nuclear antigen
E BCIN_02g08430 hypothetical protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E BCIN_13g00240 Bccdc9; Bccdc9 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E BCIN_15g00470 Bccmr1; Bccmr1 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E BCIN_13g02860 Bcmre11 K10865 MRE11; double-strand break repair protein MRE11
E BCIN_05g05520 Bcrad50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E BCIN_06g01230 hypothetical protein K10867 NBN; nibrin
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E BCIN_13g02860 Bcmre11 K10865 MRE11; double-strand break repair protein MRE11
E BCIN_05g05520 Bcrad50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E BCIN_06g01230 hypothetical protein K10867 NBN; nibrin
D BRCA complex
E BCIN_11g01620 Bcrad51 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E BCIN_11g01620 Bcrad51 K04482 RAD51; DNA repair protein RAD51
E BCIN_02g02400 Bcrad57 K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E BCIN_04g04410 Bcrad52 K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E BCIN_02g07960 Bcrad54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E BCIN_10g03960 Bcrdh54 K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E BCIN_01g06030 Bcsgs1; Bcsgs1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E BCIN_01g06030 Bcsgs1; Bcsgs1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E BCIN_10g02950 Bctop3; Bctop3 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
D RPA (replication factor A)
E BCIN_04g00240 Bcrfa1; Bcrfa1 K07466 RFA1; replication factor A1
E BCIN_12g01760 Bcrfa2; Bcrfa2 K10739 RFA2; replication factor A2
E BCIN_08g03190 hypothetical protein K10740 RPA3; replication factor A3
D Protein phosphatase 4
E BCIN_01g00330 Bcpsy2; Bcpsy2 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E BCIN_09g03280 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E BCIN_02g06460 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E BCIN_06g01740 hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E BCIN_13g02800 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E BCIN_08g04370 Bcnse4; Bcnse4 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E BCIN_13g03700 hypothetical protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E BCIN_11g02100 Bcmus81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E BCIN_11g06250 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E BCIN_05g01910 hypothetical protein K10992 SFR1; Swi5-dependent recombination DNA repair protein 1
E BCIN_02g00200 Bcslx1; Bcslx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E BCIN_05g02140 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E BCIN_12g04590 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E BCIN_12g04600 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E BCIN_14g05150 Bceaf3; Bceaf3 K11339 MORF4L1; mortality factor 4-like protein 1
E BCIN_15g00610 hypothetical protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E BCIN_05g02630 Bcwss1; Bcwss1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E BCIN_06g05680 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E BCIN_01g06520 Bcmph1; Bcmph1 K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E BCIN_06g03990 Bcku70; Bcku70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E BCIN_10g05490 Bcku80; Bcku80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E BCIN_13g02860 Bcmre11 K10865 MRE11; double-strand break repair protein MRE11
E BCIN_05g05520 Bcrad50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E BCIN_08g02540 Bcdnl4; Bcdnl4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E BCIN_11g03700 Bcpol4; Bcpol4 K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
E BCIN_16g03690 hypothetical protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E BCIN_08g06920 Bchnt3; Bchnt3 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E BCIN_05g01850 hypothetical protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E BCIN_03g04520 Bcmhf1; Bcmhf1 K11511 APITD1; centromere protein S
D Bloom's syndrome complex (BTR)
E BCIN_01g06030 Bcsgs1; Bcsgs1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E BCIN_10g02950 Bctop3; Bctop3 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E BCIN_06g05880 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E BCIN_11g01620 Bcrad51 K04482 RAD51; DNA repair protein RAD51
E BCIN_06g05660 hypothetical protein K11137 TELO2; telomere length regulation protein
E BCIN_13g04260 Bcduf1; Bcduf1 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E BCIN_12g02890 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E BCIN_08g00230 hypothetical protein K24752 WDR70; WD repeat-containing protein 70
E BCIN_15g00470 Bccmr1; Bccmr1 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BCIN_08g03950 Bcrad30 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D BCIN_14g05050 hypothetical protein K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D BCIN_06g02550 hypothetical protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D BCIN_11g05530 Bcrev1; Bcrev1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D BCIN_01g02180 Bcrev3; Bcrev3 K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D BCIN_06g05390 hypothetical protein K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D BCIN_12g01670 Bcrad18 K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D BCIN_08g03500 hypothetical protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D BCIN_12g03990 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D BCIN_01g08720 Bcmms2; Bcmms2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D BCIN_09g01730 hypothetical protein K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D BCIN_01g06320 Bcpol30 K04802 PCNA; proliferating cell nuclear antigen
D BCIN_02g06030 hypothetical protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D BCIN_03g07610 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D BCIN_16g04950 hypothetical protein K10903 HUS1; HUS1 checkpoint protein
D BCIN_05g01890 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D BCIN_02g01280 Bcrad24 K06662 HRAD17; cell cycle checkpoint protein
D BCIN_03g04190 Bcrfc4; Bcrfc4 K10755 RFC2_4; replication factor C subunit 2/4
D BCIN_01g05360 Bcrfc2; Bcrfc2 K10755 RFC2_4; replication factor C subunit 2/4
D BCIN_02g00920 Bcrfc3; Bcrfc3 K10756 RFC3_5; replication factor C subunit 3/5
D BCIN_14g01800 Bcrfc5; Bcrfc5 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D BCIN_05g01890 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D BCIN_03g03160 Bctof1; Bctof1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D BCIN_08g05400 hypothetical protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D BCIN_09g01360 Bcmrc1; Bcmrc1 K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D BCIN_06g05660 hypothetical protein K11137 TELO2; telomere length regulation protein
D BCIN_16g01360 Bctti1; Bctti1 K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D BCIN_07g05120 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D BCIN_16g03090 Bcget4; Bcget4 K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D BCIN_08g06250 Bcmec1; Bcmec1 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D BCIN_08g03380 hypothetical protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D BCIN_05g06110 Bcchk1; Bcchk1 K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D BCIN_01g06480 hypothetical protein K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D BCIN_07g02410 Bcmih1; Bcmih1 K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D BCIN_01g02580 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D BCIN_01g09310 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D BCIN_09g04550 Bcswe1; Bcswe1 K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D BCIN_10g05900 hypothetical protein K24664 FKH; forkhead protein FKH
D BCIN_02g08530 Bcvps4; Bcvps4 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D BCIN_14g04600 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D BCIN_07g01220 Bcpol5; Bcpol5 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D BCIN_02g03410 Bcpso2; Bcpso2 K15340 DCLRE1A; DNA cross-link repair 1A protein
D BCIN_02g04410 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D BCIN_07g06590 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D BCIN_12g04410 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D BCIN_09g05220 hypothetical protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D BCIN_08g00660 Bcprp19 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D BCIN_12g04450 Bccef1; Bccef1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D BCIN_04g01620 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D BCIN_11g00600 Bcprp46 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D BCIN_16g01680 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BCIN_06g06160 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BCIN_08g01700 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BCIN_01g06340 Bcdut1; Bcdut1 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BCIN_04g06740 hypothetical protein K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D BCIN_08g01360 hypothetical protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BCIN_16g04120 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BCIN_05g08060 Bccry1; Bccry1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BCIN_05g06460 Bcung1; Bcung1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BCIN_04g01300 Bcmag1; Bcmag1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BCIN_13g02730 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BCIN_14g01440 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BCIN_01g10000 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E BCIN_01g10000 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D BCIN_16g01680 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BCIN_06g06160 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BCIN_08g01700 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BCIN_01g06340 Bcdut1; Bcdut1 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024