+E Transcription factors KO
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Transcription Factors - Bradyrhizobium diazoefficiens USDA 110
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D bll3668 bll3668; transcriptional regulatory protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D blr4000 blr4000; transcriptional regulatory protein K13652 K13652; AraC family transcriptional regulator
D bll6698 bll6698; transcriptional regulatory protein K13653 K13653; AraC family transcriptional regulator
D bll2794 bll2794; transcriptional regulatory protein K07506 K07506; AraC family transcriptional regulator
D blr4255 blr4255; transcriptional regulatory protein K07506 K07506; AraC family transcriptional regulator
D bll0687 bll0687; transcriptional regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D bll8171 bll8171; transcriptional regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D blr7904 blr7904; transcriptional regulatory protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D bll0484 bll0484; transcriptional regulatory protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D bll0777 bll0777; transcriptional regulatory protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D bll7555 bll7555; transcriptional regulatory protein K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator
D bll2023 nodD1; transcriptional regulatory protein K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator
D blr3620 blr3620; transcriptional regulatory protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D bll7244 bll7244; transcriptional regulatory protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D bll2580 cbbR; ORF_ID:bll2580; probable transcriptional regulator protein K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
C DeoR family
D blr2433 blr2433; transcriptional regulatory protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D blr6378 blr6378; transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D blr6357 blr6357; transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D bll3301 bll3301; transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D blr3394 blr3394; transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D blr1118 blr1118; transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D bll3916 bll3916; transcriptional regulatory protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D bll3974 bll3974; transcriptional regulatory protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D bll1220 bll1220; transcriptional regulatory protein K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D blr6245 blr6245; transcriptional regulatory protein K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D bll5646 bll5646; transcriptional regulatory protein K03710 K03710; GntR family transcriptional regulator
D bll3929 bll3929; transcriptional regulatory protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D blr2901 blr2901; transcriptional regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D bll4154 bll4154; transcriptional regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D blr6977 blr6977; transcriptional regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D blr3325 blr3325; transcriptional regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D blr2391 blr2391; transcriptional regulatory protein K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
C TetR/AcrR family
D bll4209 bll4209; transcriptional regulatory protein K09017 rutR; TetR/AcrR family transcriptional regulator
D blr8185 blr8185; transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D blr1086 blr1086; transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D blr3952 blr3952; transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D blr4006 blr4006; transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D blr7984 blr7984; transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D blr6905 blr6905; ORF_ID:blr6905; probable transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
C Lrp/AsnC family
D bll7260 lrp; leucine-responsive transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D bll0240 bll0240; transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D bll6330 bll6330; transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D blr8125 blr8125; transcriptional regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D blr1062 blr1062; transcriptional regulatory protein K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
C MarR family
D blr3851 blr3851; transcriptional regulatory protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D blr3829 blr3829; transcriptional regulatory protein K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D blr0736 blr0736; transcriptional regulatory protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D blr4013 blr4013; transcriptional regulatory protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
C Fur family
D bll0797 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D blr0934 blr0934; transcriptional regulatory protein Ferric uptake K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D bll0768 irr; iron response regulator K09826 irr; Fur family transcriptional regulator, iron response regulator
D blr1216 blr1216; transcriptional regulatory protein Ferric uptake K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D blr3160 blr3160; transcriptional regulatory protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D blr1071 blr1071; transcriptional regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D blr5283 blr5283; transcriptional regulatory protein K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
C CRP/FNR family
D bll0357 bll0357; transcriptional regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D bll6060 bll6060; ORF_ID:bll6060; putative catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D bll6061 fixK; transcriptional regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D bll3466 bll3466; transcriptional regulatory protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
D bll2757 fixK2; transcriptional regulatory protein K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
D blr7084 nnrR; transcriptional regulatory protein K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
C Rrf2 family
C ArsR family
D bll3087 bll3087; transcriptional regulatory protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D bll1076 bll1076; ORF_ID:bll1076; hypothetical protein K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator
D bll2454 bll2454; ORF_ID:bll2454; probable transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D bll4903 birA; birA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D bsl1986 bsl1986; ORF_ID:bsl1986; probable transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D blr3685 blr3685; transcriptional regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D bll7291 bll7291; transcriptional regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D blr2037 nifA; nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein
D bll5250 bll5250; ORF_ID:bll5250; hypothetical protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D bll0699 nikR; nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D blr7261 putA; proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D blr0314 nosR; nitrous oxide reductase expression regulator K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D bsr0701 bsr0701; ORF_ID:bsr0701; hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D bsr0185 bsr0185; ORF_ID:bsr0185; hypothetical protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D bll0630 parB; chromosome partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D bll0874 parB; partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D bll0065 bll0065; ORF_ID:bll0065; putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D blr1932 blr1932; ORF_ID:blr1932; hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D blr1613 blr1613; ORF_ID:blr1613; hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D blr1615 blr1615; ORF_ID:blr1615; hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D blr8296 blr8296; ORF_ID:blr8296; hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D bll0156 bll0156; ORF_ID:bll0156; probable transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D blr0675 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D bll7388 bll7388; ORF_ID:bll7388; hypothetical protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D blr2890 paaX; phenylacetic acid degradation operon negative regulatory protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D blr4357 blr4357; ORF_ID:blr4357; hypothetical protein K07734 paiB; transcriptional regulator
D blr1492 blr1492; ORF_ID:blr1492; hypothetical protein K07735 algH; putative transcriptional regulator
D bll5834 dksA; dnaK deletion suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D bll5032 bll5032; ORF_ID:bll5032; hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D bll4762 bll4762; ORF_ID:bll4762; putative exopolysaccharide production negative regulator precursor K25885 exoR; exopolysaccharide production negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0