+E Ribosome biogenesis KO
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Ribosome Biogenesis - Bradyrhizobium diazoefficiens USDA 110
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D bll5061 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C bll5060 era; GTP-binding protein Era K03595 era; GTPase
C blr0425 cgtA; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C bll5834 dksA; dnaK deletion suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C bll0785 nusA; N-utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C bll5028 nusB; N-utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C bll5416 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D bll4102 ksgA; rRNA-adenine N6,N6-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D blr0579 sun; SUN protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D blr3985 blr3985; Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D bll7494 bll7494; ORF_ID:bll7494; hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D blr7523 blr7523; ORF_ID:blr7523; hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D bll0632 gidB; ORF_ID:bll0632; probable Methyltransferase (EC 2.1.-.-) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D bll6610 mraW; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D bll0670 bll0670; ORF_ID:bll0670; hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D bll2649 bll2649; ORF_ID:bll2649; hypothetical protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D blr5499 blr5499; tRNA/rRNA metyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D blr3970 ftsJ; cell division protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D blr0432 blr0432; ORF_ID:blr0432; hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D blr7467 blr7467; ORF_ID:blr7467; hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D bll0525 bll0525; ORF_ID:bll0525; hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D bll2649 bll2649; ORF_ID:bll2649; hypothetical protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D bll2648 bll2648; RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D blr0474 blr0474; ORF_ID:blr0474; hypothetical protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D bll7495 bll7495; ORF_ID:bll7495; hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D bll5366 bll5366; ORF_ID:bll5366; putative ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D blr7336 blr7336; ORF_ID:blr7336; pseudouridine synthase homolog K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C bll0798 bll0798; ORF_ID:bll0798; putative acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C blr1183 rimJ; ribosomal-protein-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C blr0483 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C blr4575 blr4575; ORF_ID:blr4575; hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C blr6588 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C blr7474 blr7474; hypothetical adenine-specific methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
B rRNA processing factors
C bll5061 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C bll4305 bll4305; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C blr5094 blr5094; ORF_ID:blr5094; hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C bll5562 deaD; cold-shock dead-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C bll5060 era; GTP-binding protein Era K03595 era; GTPase
C blr4052 blr4052; GTP-binding protein K03977 engA; GTPase
C blr0425 cgtA; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C blr4492 hflx; GTP-binding protein HFLX K03665 hflX; GTPase
B Other maturation factors
C bll2570 bll2570; ORF_ID:bll2570; hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C bll5065 bll5065; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C bll0782 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C bll0786 bll0786; ORF_ID:bll0786; hypothetical protein K09748 rimP; ribosome maturation factor RimP
C bsr0431 bsr0431; ORF_ID:bsr0431; hypothetical protein K09710 ybeB; ribosome-associated protein
C bll0793 bll0793; ORF_ID:bll0793; hypothetical protein K07042 ybeY; probable rRNA maturation factor
C blr0724 blr0724; sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C bll7439 bll7439; GTP-binding protein K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024