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Transcription Machinery - Bradyrhizobium diazoefficiens USDA 110
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E bll5376 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E bll5410 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E bll5409 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E bll5066 rnpO; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E bll7349 sigA; primary sigma factor K03086 rpoD; RNA polymerase primary sigma factor
E bll1028 carQ; RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E blr7797 blr7797; RNA polymerase sigma-E factor (Sigma-24) protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E bll7170 bll7170; ORF_ID:bll7170; hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E blr2203 blr2203; ORF_ID:blr2203; putative RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E bll6919 bll6919; ORF_ID:bll6919; probable RNA polymerase sigma subunit K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E bll6612 bll6612; ORF_ID:bll6612; hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E blr2557 blr2557; ORF_ID:blr2557; putative RNA polymerase sigma factor protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E bll6484 ecfA; ECF sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E bll3014 bll3014; ORF_ID:bll3014; putative RNA polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E blr3038 SigD; ECF family sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E blr3042 blr3042; ORF_ID:blr3042; putative RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E blr3694 blr3694; ORF_ID:blr3694; putative RNA polymerase sigma-E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E blr7812 blr7812; ORF_ID:blr7812; putative RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E bll0302 rpoH3; RNA polymerase subunit K03089 rpoH; RNA polymerase sigma-32 factor
E blr7337 rpoH2; sigma32-like transcription factor K03089 rpoH; RNA polymerase sigma-32 factor
E blr5231 rpoH1; sigma32-like factor K03089 rpoH; RNA polymerase sigma-32 factor
E blr1883 rpoN1; RNA polymerase sigma-54 subunit K03092 rpoN; RNA polymerase sigma-54 factor
E blr0723 rpoN2; RNA polymerase sigma-54 subunit K03092 rpoN; RNA polymerase sigma-54 factor
C Other transcription-related factors
D RNA polymerase-associated proteins
E bll0785 nusA; N-utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
E bll5028 nusB; N-utilization substance protein B K03625 nusB; transcription antitermination protein NusB
E bll5416 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D Transcription elongation factors
E bll5834 dksA; dnaK deletion suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
E blr7378 greA; transcription elongation factor K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E bll0635 rho; transcription termination factor K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024