+E Ribosome biogenesis KO
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Ribosome Biogenesis - Bifidobacterium animalis subsp. lactis AD011
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D BLA_0265 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D BLA_1060 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C BLA_1420 era; GTP-binding protein Era K03595 era; GTPase
C BLA_0290 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C BLA_0391 nusA; N utilization substance-like protein K02600 nusA; transcription termination/antitermination protein NusA
C BLA_1152 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C BLA_0294 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D BLA_1538 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BLA_0794 putative 16S RNA G1207 methylase RsmC precursor K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D BLA_0251 DNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BLA_1425 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BLA_1548 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BLA_0784 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BLA_0888 putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BLA_1258 hemolysin-like protein with S4 domain found in bacteria and plants K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D BLA_0086 rrmA; rRNA (Guanine-N1-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D BLA_1531 tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BLA_1072 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BLA_1300 radical SAM enzyme, Cfr family protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BLA_1258 hemolysin-like protein with S4 domain found in bacteria and plants K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D BLA_1087 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D BLA_1333 rluB; pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BLA_0806 pseudouridine synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C BLA_1283 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C BLA_0253 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
B rRNA processing factors
C BLA_0265 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C BLA_0287 rne; ribonuclease G K08300 rne; ribonuclease E [EC:3.1.26.12]
C BLA_1452 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C BLA_1420 era; GTP-binding protein Era K03595 era; GTPase
C BLA_0290 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C BLA_0793 hflX; GTP-binding proten HflX K03665 hflX; GTPase
B Other maturation factors
C BLA_1057 Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C BLA_0958 relA; probable GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C BLA_0393 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C BLA_1270 Iojap-like protein K09710 ybeB; ribosome-associated protein
C BLA_1422 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C BLA_1214 conserved hypothetical protein K07574 yhbY; RNA-binding protein
C BLA_0994 putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
C BLA_0267 predicted metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024