+F Repair protein KO #

  DNA Repair and Recombination Proteins - Burkholderia mallei ATCC 23344

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BMA0368 ogt; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BMA0636 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BMAA0528 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BMA3114 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BMA1931 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BMA2537 pyrophosphatase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BMA2245 dut; deoxyuridine 5`-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BMA0368 ogt; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BMA0115 ada; ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BMA0636 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BMAA0528 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BMA1580 phage SPO1 DNA polymerase domain protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BMA0116 alkA; DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BMA1655 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BMA3114 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BMA2871 tag; DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BMA3115 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BMA1931 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BMA1738 xth-2; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BMA0167 xth-1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E BMA1698 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BMA1560 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BMAA0319 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BMA3095 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E BMAA0062 uvrA2; excinuclease ABC, subunit A, form 2 K03701 uvrA; excinuclease ABC subunit A E BMAA0880 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E BMA0552 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E BMA0928 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BMAA0319 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BMA1560 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BMA2640 rpoC; DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BMA2606 rpoA; dna-directed rna polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BMA2095 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BMA1491 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BMA1671 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E BMA2314 mutL; mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BMA2272 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BMAA0328 xseB; exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BMA1913 dnaE1; DNA polymerase III, alpha subunit, form 1 K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BMA0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BMA0673 DNA polymerase III, chi subunit, putative K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E BMA2451 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BMA1424 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BMA0762 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BMA1361 DNA polymerase III, subunit gamma, putative K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BMA1560 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BMA0928 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BMA3093 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BMA1769 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E BMA1769.1 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E BMA1768 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BMA0272 recA; recA protein K03553 recA; recombination protein RecA E BMA2354 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BMA2353 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BMA2355 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BMA2963 priA; primosomal protein n` K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BMA1403 priB; primosomal replication protein n K02686 priB; primosomal replication protein N D RecFOR pathway proteins E BMA0272 recA; recA protein K03553 recA; recombination protein RecA E BMA1574 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E BMA2389 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BMA1698 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BMA0545 recO; Recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) E BMA1359 recR; recombination protein RecR K06187 recR; recombination protein RecR E BMA2333 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E BMA2354 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BMA2353 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BMA2355 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BMA0435 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BMA0003 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F BMA2913 hupB; DNA-binding protein HU, form B K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BMA1698 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BMA0545 recO; Recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) F BMA1359 recR; recombination protein RecR K06187 recR; recombination protein RecR F BMA1560 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F BMA2357 fis; factor-for-inversion stimulation protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F BMA1090 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F BMA0427 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F BMA2638 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BMA3095 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F BMAA0062 uvrA2; excinuclease ABC, subunit A, form 2 K03701 uvrA; excinuclease ABC subunit A F BMAA0880 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B F BMA0843 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BMA0864 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BMAA0651 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BMAA0720 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BMAA1529 bprA; DNA-binding protein BprA K03746 hns; DNA-binding protein H-NS F BMAA0365 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BMA2905 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BMA2867 H-NS histone family protein K03746 hns; DNA-binding protein H-NS F BMAA0068 H-NS histone family protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BMA1727 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BMA0272 recA; recA protein K03553 recA; recombination protein RecA D BMA1211 lexA; lexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D BMA2333 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BMA3143 conserved hypothetical protein K14160 imuA; protein ImuA D BMA3145 dnaE2; DNA polymerase III, alpha subunit, form 2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D BMA3093 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D BMA0273 regulatory protein RecX, putative K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BMA3002 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D BMA1326 ATP-dependent helicase, putative K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BMAA0993 ATP-dependent helicase, DEAD/DEAH family K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D BMA2537 pyrophosphatase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BMA2245 dut; deoxyuridine 5`-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BMA2510 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BMAA2027 conserved hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BMA2509 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024