+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Beta vulgaris (sugar beet)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 104907108 mRNA cap guanine-N7 methyltransferase 1 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 104884632 mRNA cap guanine-N7 methyltransferase 2 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 104908854 mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 104893694 cyclin-dependent kinase D-1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
D Cap binding complex
E 104887433 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 104906926 nuclear cap-binding protein subunit 2-like K12883 NCBP2; nuclear cap-binding protein subunit 2
E 104902378 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 104888628 pre-mRNA cleavage factor Im 25 kDa subunit 2 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 104909067 pre-mRNA cleavage factor Im 25 kDa subunit 1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 104891856 uncharacterized PE-PGRS family protein PE_PGRS54 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 104887406 protein CLP1 homolog K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 104886912 polyadenylation and cleavage factor homolog 4-like K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 104882825 polyadenylation and cleavage factor homolog 4 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 104898484 polyadenylation and cleavage factor homolog 4 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 104906596 cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 104888540 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 104904698 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 104904699 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 104883786 putative uncharacterized protein DDB_G0286901 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 104901189 30-kDa cleavage and polyadenylation specificity factor 30 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 104887515 flowering time control protein FY K15542 PFS2; polyadenylation factor subunit 2
E 104907473 WD repeat-containing protein 82-B K14962 WDR82; COMPASS component SWD2
E 104895202 WD repeat-containing protein 82-B K14962 WDR82; COMPASS component SWD2
E 104890329 serine/threonine-protein phosphatase PP1 isozyme 9 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104892232 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104887954 serine/threonine-protein phosphatase PP1 isozyme 2 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104904877 serine/threonine-protein phosphatase PP1 isozyme 4 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104891101 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104900043 serine/threonine-protein phosphatase PP1 isozyme 2 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 104885602 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 104891838 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 104907925 cleavage stimulation factor subunit 50 K14406 CSTF1; cleavage stimulation factor subunit 1
E 104884428 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 104893770 cleavage stimulation factor subunit 77 K14408 CSTF3; cleavage stimulation factor subunit 3
E 104905104 uncharacterized LOC104905104 K06100 SYMPK; symplekin
E 104892490 hypothetical protein isoform A K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 104886497 small nuclear ribonucleoprotein-associated protein B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 104903817 small nuclear ribonucleoprotein SmD3b K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 104895490 small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 104885208 probable small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 104888885 probable small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 104898344 probable small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 104888540 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 104904698 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 104904699 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 104884428 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 104905104 uncharacterized LOC104905104 K06100 SYMPK; symplekin
E 104892490 hypothetical protein isoform A K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E 104902510 transcription elongation factor SPT4 homolog 2 K15171 SUPT4H1; transcription elongation factor SPT4
E 104895134 putative transcription elongation factor SPT5 homolog 1 K15172 SUPT5H; transcription elongation factor SPT5
E 104893016 putative transcription elongation factor SPT5 homolog 1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 104892598 N6-adenosine-methyltransferase MT-A70-like K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 104888518 methyltransferase-like protein 1 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 104903954 methyltransferase-like protein 16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 104894321 FKBP12-interacting protein of 37 kDa K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 104888259 zinc finger CCCH domain-containing protein 13 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 104894717 E3 ubiquitin-protein ligase Hakai K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 104883131 nuclear poly(A) polymerase 4 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 104889520 nuclear poly(A) polymerase 1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 104885839 nuclear poly(A) polymerase 4 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 104888482 nuclear poly(A) polymerase 3 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E 104899222 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 104901168 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 104907242 zinc finger CCCH domain-containing protein 41 K13192 RBM26; RNA-binding protein 26
E 104908870 hypothetical protein K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 104895138 uncharacterized LOC104895138 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 104888178 RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
C Other processing factors
D 104905371 DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 104897712 DNA/RNA-binding protein KIN17-like K13102 KIN; DNA/RNA-binding protein KIN17
D 104897714 KIN17-like protein K13102 KIN; DNA/RNA-binding protein KIN17
D 104904666 methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 104899925 serrate RNA effector molecule K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 104890031 RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 104896818 protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 104908427 THO complex subunit 4D K12881 THOC4; THO complex subunit 4
E 104900154 THO complex subunit 4B K12881 THOC4; THO complex subunit 4
E 104908615 DEAD-box ATP-dependent RNA helicase 56 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 104901546 eukaryotic initiation factor 4A-3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 104905465 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 104892377 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 104887055 pinin K13114 PNN; pinin
E 104895719 formin-like protein 5 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 104883995 serine/arginine-rich splicing factor SR45 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 104886024 RNA-binding protein with serine-rich domain 1-B-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 104900057 serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 104898822 THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 104896859 THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 104898541 THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 104908427 THO complex subunit 4D K12881 THOC4; THO complex subunit 4
E 104900154 THO complex subunit 4B K12881 THOC4; THO complex subunit 4
E 104899206 THO complex subunit 5A K13174 THOC5; THO complex subunit 5
E 104909052 THO complex subunit 6 K13175 THOC6; THO complex subunit 6
E 104895807 THO complex subunit 7A K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 104884342 enhanced ethylene response protein 5 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 104894253 protein DSS1 HOMOLOG ON CHROMOSOME V K10881 SHFM1; 26 proteasome complex subunit DSS1
E 104895352 transcription and mRNA export factor SUS1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 104907418 SAC3 family protein C K23719 SAC3; nuclear mRNA export protein SAC3
E 104894761 hypothetical protein K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E 104883026 nuclear-pore anchor K09291 TPR; nucleoprotein TPR
E 104904900 protein RAE1 K14298 RAE1; mRNA export factor
E 104901582 protein RAE1 K14298 RAE1; mRNA export factor
E 104901964 protein transport protein SEC13 homolog B K14004 SEC13; protein transport protein SEC13
E 104883145 protein transport protein SEC13 homolog B K14004 SEC13; protein transport protein SEC13
E 104885418 nuclear pore complex protein NUP85 K14304 NUP85; nuclear pore complex protein Nup85
E 104901878 nuclear pore complex protein NUP43 K14305 NUP43; nuclear pore complex protein Nup43
E 104892353 hypothetical protein K14295 NUP50; nuclear pore complex protein Nup50
E 104897585 nuclear pore complex protein NUP54 K14308 NUP54; nuclear pore complex protein Nup54
E 104905321 nuclear pore complex protein NUP62 K14306 NUP62; nuclear pore complex protein Nup62
E 104903452 nuclear pore complex protein NUP88 K14318 NUP88; nuclear pore complex protein Nup88
E 104889385 nuclear pore complex protein NUP93A K14309 NUP93; nuclear pore complex protein Nup93
E 104888168 nuclear pore complex protein NUP96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 104888181 nuclear pore complex protein NUP98A K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 104898939 nuclear pore complex protein NUP98A K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 104899723 nuclear pore complex protein NUP107 K14301 NUP107; nuclear pore complex protein Nup107
E 104883162 nuclear pore complex protein NUP133 K14300 NUP133; nuclear pore complex protein Nup133
E 104903976 hypothetical protein K14311 NUP188; nuclear pore complex protein Nup188
E 104889142 nuclear pore complex protein NUP155 K14312 NUP155; nuclear pore complex protein Nup155
E 104897079 nuclear pore complex protein NUP160 K14303 NUP160; nuclear pore complex protein Nup160
E 104904756 nuclear pore complex protein NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 104902044 nuclear pore complex protein NUP205 K14310 NUP205; nuclear pore complex protein Nup205
E 104896728 nuclear pore complex protein GP210 K14314 NUP210; nuclear pore complex protein Nup210
E 104891745 nuclear pore complex protein NUP214 K14317 NUP214; nuclear pore complex protein Nup214
E 104895638 nuclear pore complex protein NUP58 K14307 NUPL1; nucleoporin p58/p45
E 104886811 zinc finger CCCH domain-containing protein 16 K14321 NUPL2; nucleoporin-like protein 2
E 104901375 uncharacterized LOC104901375 K14315 NDC1; nucleoporin NDC1
E 104892181 protein SEH1 K14299 SEH1; nucleoporin SEH1
E 104889633 aladin K14320 AAAS; aladin
E 104897210 protein GLE1 K18723 GLE1; nucleoporin GLE1
D Ran-mediated transport factors
E 104902104 GTP-binding nuclear protein Ran-3 K07936 RAN; GTP-binding nuclear protein Ran
E 104887686 GTP-binding nuclear protein Ran-3 K07936 RAN; GTP-binding nuclear protein Ran
E 104892593 plant UBX domain-containing protein 10 K18726 FAF2; FAS-associated factor 2
E 104894311 plant UBX domain-containing protein 10 K18726 FAF2; FAS-associated factor 2
E 104901384 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 104898659 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 104901385 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 104903446 protein-lysine methyltransferase METTL21B K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 104902890 protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 104888024 protein EXPORTIN 1A K14290 XPO1; exportin-1
E 104907423 exportin-7 K18460 XPO7; exportin-7
E 104889741 exportin-7-like K18460 XPO7; exportin-7
E 104893456 RAN GTPase-activating protein 2 K14319 RANGAP1; Ran GTPase-activating protein 1
E 104900811 RAN GTPase-activating protein 2 K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 104906715 eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 104887879 eukaryotic translation initiation factor K03259 EIF4E; translation initiation factor 4E
E 104882920 eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E 104902579 eukaryotic initiation factor 4A-9 K03257 EIF4A; translation initiation factor 4A
E 104886608 eukaryotic initiation factor 4A-9 K03257 EIF4A; translation initiation factor 4A
E 104905238 eukaryotic translation initiation factor 4G-like K03260 EIF4G; translation initiation factor 4G
E 104901717 eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 104900826 eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 104890431 protein PIR K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 104906735 DEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 104902059 DEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 104897519 hypothetical protein isoform A K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 104896372 polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 104889787 30S ribosomal protein 2, chloroplastic K13126 PABPC; polyadenylate-binding protein
E 104902638 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 104904989 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 104903723 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 104886045 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 104900014 DExH-box ATP-dependent RNA helicase DExH11 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 104890330 malignant T-cell-amplified sequence 1 homolog K07575 MCTS; malignant T-cell-amplified sequence
E 104909025 translation machinery-associated protein 22 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E 104889775 partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 104902959 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104907892 glycine-rich RNA-binding protein 2, mitochondrial K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104891985 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104887260 glycine-rich RNA-binding protein 3, mitochondrial K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104889672 UBP1-associated protein 2A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104893130 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104893128 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104902792 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 104883751 heterogeneous nuclear ribonucleoprotein A/B K14411 MSI; RNA-binding protein Musashi
E 104891813 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 104901733 RNA-binding protein 1 K14411 MSI; RNA-binding protein Musashi
E 104887887 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 104887888 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 104900831 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 104886669 HBS1-like protein K14416 HBS1; elongation factor 1 alpha-like protein
E 104897121 protein PELOTA 1 K06965 PELO; protein pelota
E 104890794 protein PELOTA 1 K06965 PELO; protein pelota
E 104904050 polyadenylate-binding protein 2-like K14396 PABPN1; polyadenylate-binding protein 2
E 104892476 polyadenylate-binding protein 1 K14396 PABPN1; polyadenylate-binding protein 2
E 104895646 polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 104898572 DEAD-box ATP-dependent RNA helicase 38 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 104897852 pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 104909020 protein MODIFIER OF SNC1 11 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 104889830 transcription factor Pur-alpha 1 K21772 PURA; transcriptional activator protein Pur-alpha
E 104886909 SAC3 family protein A K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E 104907364 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 104907590 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 104894144 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 104906058 eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 104900830 eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 104892888 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 104906630 regulator of nonsense transcripts UPF2 K14327 UPF2; regulator of nonsense transcripts 2
E 104898010 regulator of nonsense transcripts UPF3 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 104889871 serine/threonine-protein phosphatase PP2A catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 104898047 serine/threonine-protein phosphatase PP2A-2 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 104896530 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 104893558 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 104903673 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 104886503 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 104907681 serine/threonine protein phosphatase 2A regulatory subunit B''beta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 104883548 probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 104908834 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 104887735 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 104897647 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 104897648 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 104904433 serine/threonine-protein kinase SMG1-like K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 104890088 protein SMG7 K14409 SMG7; protein SMG7
E 104889483 protein SMG7 K14409 SMG7; protein SMG7
E 104902978 uncharacterized LOC104902978 K18734 SMG8; protein SMG8
E 104888016 protein SMG9 K18735 SMG9; protein SMG9
E 104897519 hypothetical protein isoform A K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
C Factors involved in mRNA localization
D Cargo complex
E 104887864 pumilio homolog 24 K14844 PUF6; pumilio homology domain family member 6
E 104907564 myosin-11-like K10357 MYO5; myosin V
E 104907230 myosin-2 K10357 MYO5; myosin V
E 104886548 myosin-15-like K10357 MYO5; myosin V
E 104909072 myosin-17 K10357 MYO5; myosin V
E 104901426 myosin-6 K10357 MYO5; myosin V
E 104894631 myosin-9 K10357 MYO5; myosin V
E 104899777 myosin-17 K10357 MYO5; myosin V
E 104899335 myosin-6 K10357 MYO5; myosin V
E 104886339 piRNA biogenesis protein EXD1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E 104902127 far upstream element-binding protein 1-like K13210 FUBP; far upstream element-binding protein
E 104904454 far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 104886501 far upstream element-binding protein 1 K13210 FUBP; far upstream element-binding protein
E 104904458 far upstream element-binding protein 1-like K13210 FUBP; far upstream element-binding protein
E 104886835 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 104886831 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 104886834 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 104886833 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 104886832 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 104901036 elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 104897998 elongation factor 1-gamma 2 K03233 EEF1G; elongation factor 1-gamma
E 104883065 probable ADP-ribosylation factor GTPase-activating protein AGD14 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
D Other mRNA localization factors
E 104890431 protein PIR K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 104895529 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104888216 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104906226 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104908649 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104884496 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104904723 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104891110 flowering locus K homology domain K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104905294 flowering locus K homology domain K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104894794 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104906099 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 104886692 RNA-binding KH domain-containing protein PEPPER K21444 PCBP3_4; poly(rC)-binding protein 3/4
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 104907636 protein argonaute 4A-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104907430 protein argonaute 2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104889669 protein argonaute 4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104901366 protein argonaute 1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104897846 protein argonaute 7 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104902121 protein argonaute PNH1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104903076 protein argonaute 4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104902724 protein argonaute 16 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104903598 protein argonaute 1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104903599 protein argonaute 5 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 104906715 eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 104887879 eukaryotic translation initiation factor K03259 EIF4E; translation initiation factor 4E
E 104882920 eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E 104892888 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 104906735 DEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 104902059 DEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 104888647 DEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 104892301 DEAD-box ATP-dependent RNA helicase 8-like K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 104905568 protein decapping 5 K18749 LSM14; protein LSM14
E 104896354 protein decapping 5 K18749 LSM14; protein LSM14
E 104890858 probable RNA helicase SDE3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 104902112 transportin-1 K18752 TNPO1; transportin-1
E 104904433 serine/threonine-protein kinase SMG1-like K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 104890088 protein SMG7 K14409 SMG7; protein SMG7
E 104889483 protein SMG7 K14409 SMG7; protein SMG7
E 104901616 mRNA decay activator protein ZFP36 K15308 TTP; tristetraprolin
E 104906464 zinc finger CCCH domain-containing protein 14 K18753 ZFP36L; butyrate response factor
E 104896643 zinc finger CCCH domain-containing protein 15 K18753 ZFP36L; butyrate response factor
E 104902959 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104907892 glycine-rich RNA-binding protein 2, mitochondrial K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104891985 heterogeneous nuclear ribonucleoprotein 1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104887260 glycine-rich RNA-binding protein 3, mitochondrial K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104889672 UBP1-associated protein 2A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104893130 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104893128 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 104903074 la-related protein 1A K18757 LARP1; la-related protein 1
E 104884021 la-related protein 1B K18757 LARP1; la-related protein 1
E 104895557 la-related protein 1C K18757 LARP1; la-related protein 1
D P-body specific factors
E 104906355 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 104898291 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 104899828 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 104884566 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 104899730 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 104904851 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 104895756 sm-like protein LSM3A K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 104899093 sm-like protein LSM4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 104905731 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 104885046 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 104889034 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 104893001 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 104898130 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 104905730 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 104884911 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 104907564 myosin-11-like K10357 MYO5; myosin V
E 104907230 myosin-2 K10357 MYO5; myosin V
E 104886548 myosin-15-like K10357 MYO5; myosin V
E 104909072 myosin-17 K10357 MYO5; myosin V
E 104901426 myosin-6 K10357 MYO5; myosin V
E 104894631 myosin-9 K10357 MYO5; myosin V
E 104899777 myosin-17 K10357 MYO5; myosin V
E 104899335 myosin-6 K10357 MYO5; myosin V
E 104906720 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 104908100 tubulin alpha-2 chain K07374 TUBA; tubulin alpha
E 104885616 tubulin alpha-1 chain-like K07374 TUBA; tubulin alpha
E 104889841 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 104895843 tubulin alpha-2 chain K07374 TUBA; tubulin alpha
E 104905333 CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 104888285 probable NOT transcription complex subunit VIP2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 104895355 probable NOT transcription complex subunit VIP2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 104888733 general negative regulator of transcription subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 104903119 hypothetical protein isoform A K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 104906749 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 104892391 carbon catabolite repressor protein 4 homolog 1-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 104893151 carbon catabolite repressor protein 4 homolog 4 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 104904886 probable CCR4-associated factor 1 homolog 6 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104883198 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104899837 probable CCR4-associated factor 1 homolog 9 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104898267 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104896236 DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 104905349 protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 104898860 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 104892014 enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 104906630 regulator of nonsense transcripts UPF2 K14327 UPF2; regulator of nonsense transcripts 2
E 104898010 regulator of nonsense transcripts UPF3 K14328 UPF3; regulator of nonsense transcripts 3
E 104900045 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 104888716 hypothetical protein K20102 YTHDF; YTH domain-containing family protein
E 104886801 hypothetical protein K20102 YTHDF; YTH domain-containing family protein
E 104900510 hypothetical protein K20102 YTHDF; YTH domain-containing family protein
E 104889138 YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 104899725 oligouridylate-binding protein 1B K13201 TIA1; nucleolysin TIA-1/TIAR
E 104901656 oligouridylate-binding protein 1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 104896372 polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 104889787 30S ribosomal protein 2, chloroplastic K13126 PABPC; polyadenylate-binding protein
E 104902638 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 104904989 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 104903723 polyadenylate-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 104886045 polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 104907904 ras GTPase-activating protein-binding protein 1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 104908804 ras GTPase-activating protein-binding protein 1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 104888987 eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 104908012 eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 104891274 eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 104902579 eukaryotic initiation factor 4A-9 K03257 EIF4A; translation initiation factor 4A
E 104886608 eukaryotic initiation factor 4A-9 K03257 EIF4A; translation initiation factor 4A
E 104901546 eukaryotic initiation factor 4A-3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 104905238 eukaryotic translation initiation factor 4G-like K03260 EIF4G; translation initiation factor 4G
E 104901717 eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 104900826 eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 104893687 guanine nucleotide-binding protein subunit beta-like protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 104902131 tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 104898291 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 104899828 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 104906355 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 104888647 DEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 104892301 DEAD-box ATP-dependent RNA helicase 8-like K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 104892014 enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 104905349 protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 104898860 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 104884566 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 104899730 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 104904851 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 104895756 sm-like protein LSM3A K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 104899093 sm-like protein LSM4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 104905731 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 104885046 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 104889034 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 104893001 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 104898130 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 104905730 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 104884911 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 104896145 5'-3' exoribonuclease 3 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 104890966 5'-3' exoribonuclease 4 K20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
E 104890698 uncharacterized LOC104890698 K07573 CSL4; exosome complex component CSL4
E 104903126 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 104894270 putative exosome complex component rrp40 K03681 RRP40; exosome complex component RRP40
E 104886666 exosome complex component RRP41 homolog K11600 RRP41; exosome complex component RRP41
E 104885303 exosome complex exonuclease RRP46 homolog K12590 RRP46; exosome complex component RRP46
E 104898661 exosome complex component RRP41-like K12587 MTR3; exosome complex component MTR3
E 104887169 exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 104887062 exosome complex component RRP45B K03678 RRP45; exosome complex component RRP45
E 104884878 exosome complex component RRP45B K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 104895745 exosome complex exonuclease RRP44 homolog A K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 104883964 protein RRP6-like 1 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 104893392 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 104887774 nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 104900087 hypothetical protein isoform A K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 104891567 non-canonical poly(A) RNA polymerase PAPD5 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 104886775 DExH-box ATP-dependent RNA helicase DExH10 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
E 104897021 DExH-box ATP-dependent RNA helicase DExH9 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 104900014 DExH-box ATP-dependent RNA helicase DExH11 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 104899337 tetratricopeptide repeat protein SKI3 K12600 SKI3; superkiller protein 3
E 104887652 WD repeat-containing protein VIP3 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 104906749 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 104892391 carbon catabolite repressor protein 4 homolog 1-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 104893151 carbon catabolite repressor protein 4 homolog 4 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 104905333 CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 104888285 probable NOT transcription complex subunit VIP2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 104895355 probable NOT transcription complex subunit VIP2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 104888733 general negative regulator of transcription subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 104903119 hypothetical protein isoform A K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 104904886 probable CCR4-associated factor 1 homolog 6 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104883198 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104899837 probable CCR4-associated factor 1 homolog 9 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104898267 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 104891695 cell differentiation protein RCD1 homolog K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 104901979 CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
E 104887251 ABC transporter I family member 19 K12608 CAF16; CCR4-NOT complex subunit CAF16
E 104890670 ABC transporter I family member 20 K12608 CAF16; CCR4-NOT complex subunit CAF16
D Pan complex
D Other 3'-5' decay factors
E 104903794 hypothetical protein K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 104891872 poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 104894449 poly(A)-specific ribonuclease PARN-like K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 104907180 DExH-box ATP-dependent RNA helicase DExH3 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 104895266 DExH-box ATP-dependent RNA helicase DExH6 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 104908261 DExH-box ATP-dependent RNA helicase DExH3 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 104896635 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 104893157 DExH-box ATP-dependent RNA helicase DExH1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 104890103 hypothetical protein K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 104901371 protein NRDE2 homolog K26109 NRDE2; nuclear exosome regulator NRDE2
E 104907662 protein RST1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 104896353 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E 104891323 probable ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E 104893952 enolase 1, chloroplastic K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 104898495 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 104900022 cytosolic enolase 3 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 104882977 polyribonucleotide nucleotidyltransferase 2, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 104884515 polyribonucleotide nucleotidyltransferase 1, chloroplastic K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 104906202 ATP-dependent 6-phosphofructokinase 5, chloroplastic K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 104903729 ATP-dependent 6-phosphofructokinase 3 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 104902340 ATP-dependent 6-phosphofructokinase 6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 104885917 ATP-dependent 6-phosphofructokinase 6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 104897825 ATP-dependent 6-phosphofructokinase 2 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 104896058 ATP-dependent 6-phosphofructokinase 5, chloroplastic K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 104897806 heat shock 70 kDa protein, mitochondrial-like K04043 dnaK; molecular chaperone DnaK
E 104904782 heat shock 70 kDa protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 104904761 ruBisCO large subunit-binding protein subunit beta, chloroplastic-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 104884031 chaperonin 60 subunit beta 2, chloroplastic-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 104888526 ruBisCO large subunit-binding protein subunit beta, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 104908730 ruBisCO large subunit-binding protein subunit beta, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 104883629 chaperonin CPN60-2, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 104899815 chaperonin CPN60-like 2, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 104903126 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 104890698 uncharacterized LOC104890698 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 104886666 exosome complex component RRP41 homolog K11600 RRP41; exosome complex component RRP41
E 104887169 exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024