+D GENES KO
#
KEGG Orthology (KO) - Campylobacter coli RM5611
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:ccoi00010]
D YSU_01250 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YSU_04850 fructose-1 6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YSU_02610 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YSU_01900 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YSU_01890 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YSU_01895 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YSU_06700 phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YSU_08480 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YSU_06925 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YSU_01545 Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YSU_06185 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YSU_06180 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YSU_03175 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D YSU_01175 NADP-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D YSU_01240 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YSU_01865 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSU_04215 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:ccoi00020]
D YSU_08520 gltA; type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D YSU_04870 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YSU_06210 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YSU_06185 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YSU_06180 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YSU_06175 oorC; 2-oxoglutarate:acceptor oxidoreductase K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D YSU_06190 oorD; 2-oxoglutarate:acceptor oxidoreductase K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D YSU_06195 succinyl-CoA synthetase subsunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YSU_06200 sucC; malate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YSU_06840 fumarate reductase K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D YSU_06835 frdB; fumarate reductase K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D YSU_06845 fumarate reductase K25996 frdC; succinate dehydrogenase subunit C
D YSU_02065 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YSU_06205 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YSU_06920 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D YSU_03865 acetyl-CoA carboxylase subunit alpha K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D YSU_04210 biotin attachment protein K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D YSU_04215 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YSU_01545 Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:ccoi00030]
D YSU_01250 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YSU_06620 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YSU_00560 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YSU_07500 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D YSU_04245 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YSU_01865 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSU_04280 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YSU_02610 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YSU_04850 fructose-1 6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:ccoi00040]
D YSU_06440 altronate hydrolase K16849 uxaA1; altronate dehydratase small subunit [EC:4.2.1.7]
D YSU_06435 altronate hydrolase K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7]
D YSU_01245 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YSU_06620 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:ccoi00051]
D YSU_01865 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSU_06425 short-chain dehydrogenase K18333 E1.1.1.435; L-fucose dehydrogenase [EC:1.1.1.435]
D YSU_06445 dihydrodipicolinate synthase K26911 fucH; 2-dehydro-3-deoxy-L-fuconate aldolase [EC:4.1.2.64]
D YSU_04850 fructose-1 6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YSU_02610 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YSU_01900 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YSU_04245 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:ccoi00052]
D YSU_03350 UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YSU_01785 NAD-dependent epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YSU_01245 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YSU_01865 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00053 Ascorbate and aldarate metabolism [PATH:ccoi00053]
D YSU_01775 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20]
C 00500 Starch and sucrose metabolism [PATH:ccoi00500]
D YSU_01245 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YSU_01865 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSU_01250 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ccoi00520]
D YSU_02060 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YSU_07085 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D YSU_04940 glmU; N-acetylglucosamine-1-phosphate uridyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YSU_04440 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YSU_08500 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YSU_06325 aminotransferase DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D YSU_03285 WxcM-like protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D YSU_02420 N-acetyl glucosamine/N-acetyl galactosamine epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D YSU_02415 C4 aminotransferase K15895 pseC; UDP-4-amino-4,6-dideoxy-L-N-acetyl-beta-L-altrosamine transaminase [EC:2.6.1.92]
D YSU_02295 N-acetyltransferase K15896 pseH; UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase [EC:2.3.1.202]
D YSU_02300 nucleotidase K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D YSU_02275 N-acetylneuraminate synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D YSU_02305 CMP-N-acetylneuraminic acid synthetase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D YSU_03400 UDP-GlcNAc C4,6 dehydratase K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D YSU_03395 aminotransferase DegT K15910 pglE; UDP-N-acetylbacillosamine transaminase [EC:2.6.1.34]
D YSU_03390 acetyltransferase K15913 pglD; UDP-N-acetylbacillosamine N-acetyltransferase [EC:2.3.1.203]
D YSU_02245 UDP-N-acetylglucosamine 2-epimerase K18429 legG; GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolysing) [EC:3.2.1.184]
D YSU_02250 hypothetical protein K18430 legI; N,N'-diacetyllegionaminate synthase [EC:2.5.1.101]
D YSU_02230 Post-translational flagellin modification protein B K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D YSU_01865 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSU_01245 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YSU_03350 UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YSU_01785 NAD-dependent epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YSU_01250 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YSU_02260 aminotransferase DegT K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00620 Pyruvate metabolism [PATH:ccoi00620]
D YSU_01240 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YSU_01545 Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YSU_06185 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YSU_06180 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YSU_01175 NADP-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D YSU_05550 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YSU_05555 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YSU_06925 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YSU_06670 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YSU_02430 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YSU_02435 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YSU_08260 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YSU_03175 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D YSU_00965 oxidoreductase K18930 dld; D-lactate dehydrogenase
D YSU_06405 aldehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D YSU_05010 beta-lactamase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YSU_02450 malate dehydrogenase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D YSU_03865 acetyl-CoA carboxylase subunit alpha K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D YSU_04210 biotin attachment protein K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D YSU_06205 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YSU_06920 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D YSU_02065 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YSU_06840 fumarate reductase K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D YSU_06835 frdB; fumarate reductase K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D YSU_06845 fumarate reductase K25996 frdC; succinate dehydrogenase subunit C
D YSU_04215 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YSU_06145 integral memnbrane protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D YSU_08725 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ccoi00630]
D YSU_01240 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YSU_06205 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YSU_08520 gltA; type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D YSU_04870 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YSU_02935 FAD-binding protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D YSU_04120 oxidoreductase K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D YSU_01960 catalase K03781 katE; catalase [EC:1.11.1.6]
D YSU_01540 hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D YSU_02780 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D YSU_05505 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YSU_06875 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YSU_06405 aldehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D YSU_01345 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YSU_01350 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YSU_01355 formate dehydrogenase K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YSU_01360 formate dehydrogenase K00127 fdoI; formate dehydrogenase subunit gamma
D YSU_05095 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:ccoi00640]
D YSU_01240 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YSU_07555 acyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D YSU_05550 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YSU_05555 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YSU_06670 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YSU_02430 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YSU_02435 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YSU_08260 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YSU_06200 sucC; malate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YSU_06195 succinyl-CoA synthetase subsunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YSU_07545 methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D YSU_07540 prpD; 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D YSU_04870 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YSU_07550 prpB; 2-methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D YSU_03175 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
C 00650 Butanoate metabolism [PATH:ccoi00650]
D YSU_06840 fumarate reductase K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D YSU_06835 frdB; fumarate reductase K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D YSU_06845 fumarate reductase K25996 frdC; succinate dehydrogenase subunit C
D YSU_01545 Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YSU_06185 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YSU_06180 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YSU_02500 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YSU_02505 acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:ccoi00660]
D YSU_02500 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YSU_02505 acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YSU_06655 L-carnitine dehydratase K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22]
D YSU_06200 sucC; malate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YSU_06195 succinyl-CoA synthetase subsunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YSU_06660 hypothetical protein K18291 ich-P; itaconyl-CoA hydratase / mesaconyl-C4 CoA hydratase [EC:4.2.1.56 4.2.1.-]
D YSU_08715 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YSU_08710 leuD; isopropylmalate isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YSU_08720 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:ccoi00562]
D YSU_08255 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YSU_01900 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:ccoi00190]
D YSU_00995 NADH dehydrogenase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D YSU_01000 NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D YSU_01005 NADH dehydrogenase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D YSU_01010 NADH dehydrogenase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D YSU_01015 NADH-ubiquinone oxidoreductase chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D YSU_01020 NADH dehydrogenase K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D YSU_01025 NADH dehydrogenase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D YSU_01030 NADH:ubiquinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D YSU_01035 NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D YSU_01040 NADH:ubiquinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D YSU_01045 NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D YSU_01050 NADH:ubiquinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D YSU_01055 NADH:ubiquinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D YSU_01060 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D YSU_06840 fumarate reductase K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D YSU_06835 frdB; fumarate reductase K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D YSU_06845 fumarate reductase K25996 frdC; succinate dehydrogenase subunit C
D YSU_03090 ubiquinol cytochrome C oxidoreductase K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D YSU_03095 ubiquinol cytochrome C oxidoreductase K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D YSU_03100 cytochrome C K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D YSU_01465 cytochrome oxidase subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D YSU_01470 peptidase S13 K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D YSU_01475 cytochrome B561 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D YSU_01480 cytochrome CBB3 K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D YSU_00390 cytochrome C oxidase subunit II K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YSU_00395 cytochrome C oxidase assembly protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YSU_03230 cytochrome C K08738 CYC; cytochrome c
D YSU_02850 cytochrome C553 K08738 CYC; cytochrome c
D YSU_08375 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YSU_08365 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YSU_08370 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YSU_08360 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YSU_03000 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YSU_08385 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YSU_08390 F0F1 ATP synthase subunit B' K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YSU_04195 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D YSU_05765 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D YSU_02090 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YSU_05920 polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:ccoi00710]
D YSU_01895 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YSU_01890 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YSU_02610 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YSU_04850 fructose-1 6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YSU_00560 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YSU_04245 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YSU_01900 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YSU_06620 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YSU_07500 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D YSU_04215 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YSU_02450 malate dehydrogenase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D YSU_06205 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:ccoi00720]
D YSU_01545 Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YSU_03865 acetyl-CoA carboxylase subunit alpha K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D YSU_04210 biotin attachment protein K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D YSU_06205 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YSU_02065 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YSU_06840 fumarate reductase K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D YSU_06835 frdB; fumarate reductase K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D YSU_06845 fumarate reductase K25996 frdC; succinate dehydrogenase subunit C
D YSU_06195 succinyl-CoA synthetase subsunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YSU_06200 sucC; malate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YSU_06185 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YSU_06180 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YSU_06175 oorC; 2-oxoglutarate:acceptor oxidoreductase K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D YSU_06190 oorD; 2-oxoglutarate:acceptor oxidoreductase K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D YSU_06210 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YSU_04870 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YSU_06670 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YSU_02430 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YSU_02435 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YSU_08260 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YSU_04775 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D YSU_03010 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YSU_05555 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YSU_05550 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YSU_01240 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:ccoi00680]
D YSU_01345 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YSU_01350 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YSU_01355 formate dehydrogenase K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YSU_01360 formate dehydrogenase K00127 fdoI; formate dehydrogenase subunit gamma
D YSU_06875 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YSU_08480 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YSU_06205 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YSU_02610 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YSU_04850 fructose-1 6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YSU_05550 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YSU_05555 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YSU_01240 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YSU_06700 phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YSU_04410 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YSU_07245 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YSU_07495 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:ccoi00910]
D YSU_05160 nitrate reductase catalytic subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D YSU_05145 nitrate reductase K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D YSU_02100 cytochrome C K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D YSU_02095 cytochrome C K15876 nrfH; cytochrome c nitrite reductase small subunit
D YSU_05995 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D YSU_03745 carbon-nitrogen hydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D YSU_05505 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YSU_00065 glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YSU_00070 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YSU_07730 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:ccoi00920]
D YSU_01735 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YSU_01730 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YSU_00810 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D YSU_01745 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D YSU_08515 CysQ protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YSU_05245 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YSU_04310 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YSU_08760 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:ccoi00061]
D YSU_06670 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YSU_02430 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YSU_02435 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YSU_08260 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YSU_06680 acyl carrier protein K02078 acpP; acyl carrier protein
D YSU_02375 acyl carrier protein K02078 acpP; acyl carrier protein
D YSU_08320 malonyl CoA-ACP transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YSU_02320 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YSU_02380 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YSU_07240 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YSU_06675 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YSU_06695 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YSU_07585 3-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YSU_01905 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
D YSU_05085 2-acyl-glycerophospho-ethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:ccoi00121]
D YSU_05020 7-alpha-hydroxysteroid dehydrogenase K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:ccoi00561]
D YSU_01175 NADP-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D YSU_07235 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YSU_07095 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YSU_06270 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YSU_07650 DeoR family transcriptional regulator K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:ccoi00564]
D YSU_03040 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D YSU_07095 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YSU_06270 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YSU_07650 DeoR family transcriptional regulator K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D YSU_02135 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D YSU_05085 2-acyl-glycerophospho-ethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D YSU_02155 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D YSU_03420 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D YSU_04815 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D YSU_03695 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D YSU_00805 phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
C 00565 Ether lipid metabolism [PATH:ccoi00565]
D YSU_02135 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
D YSU_02135 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D YSU_02135 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:ccoi00592]
D YSU_02135 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 01040 Biosynthesis of unsaturated fatty acids
D YSU_04295 hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:ccoi00230]
D YSU_01865 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSU_04280 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YSU_07860 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YSU_02675 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D YSU_07930 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YSU_04665 phosphoribosylformylglycinamidine synthase K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D YSU_06285 phosphoribosylformylglycinamidine synthase K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D YSU_06280 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D YSU_01285 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D YSU_05490 N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D YSU_06290 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D YSU_00125 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YSU_04655 phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YSU_04235 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YSU_07425 stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YSU_02915 laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YSU_03735 inosine 5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YSU_07220 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YSU_02020 nucleoside-triphosphate diphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D YSU_02040 nicotinate phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D YSU_02695 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YSU_03135 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D YSU_00130 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YSU_07760 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YSU_06005 potassium-transporting ATPase subunit C K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YSU_07115 guanosine polyphosphate pyrophosphohydrolase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YSU_02750 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YSU_01425 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YSU_05760 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YSU_06355 HIT family hydrolase K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D YSU_01745 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D YSU_01735 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YSU_01730 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YSU_00810 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D YSU_05425 hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 00240 Pyrimidine metabolism [PATH:ccoi00240]
D YSU_01445 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YSU_03500 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YSU_03045 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D YSU_07640 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D YSU_05035 diguanylate cyclase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D YSU_07750 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D YSU_06980 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D YSU_06015 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D YSU_07220 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YSU_06315 septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D YSU_00145 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D YSU_07425 stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YSU_02455 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D YSU_02425 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D YSU_00130 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YSU_07760 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YSU_05230 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D YSU_00140 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D YSU_04880 oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:ccoi00250]
D YSU_05250 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSU_00415 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D YSU_00155 ansB; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YSU_00425 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D YSU_05655 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YSU_04220 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YSU_01425 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YSU_00125 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YSU_03500 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YSU_00065 glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YSU_00070 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YSU_01400 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YSU_05505 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YSU_01445 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YSU_06280 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D YSU_02060 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YSU_07860 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:ccoi00260]
D YSU_02540 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YSU_03935 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YSU_08140 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D YSU_08225 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D YSU_04995 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D YSU_06875 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YSU_06700 phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YSU_04410 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YSU_07245 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YSU_07495 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D YSU_04880 oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D YSU_00695 serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YSU_04905 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YSU_07135 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YSU_07140 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:ccoi00270]
D YSU_05245 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YSU_04310 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YSU_01935 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YSU_03015 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YSU_03510 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YSU_08315 S-adenosylhomocysteine nucleosidase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D YSU_02915 laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YSU_03030 S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YSU_02625 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]
D YSU_02540 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YSU_03935 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YSU_08140 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D YSU_08760 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D YSU_08775 O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D YSU_07605 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YSU_05250 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSU_03175 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D YSU_06205 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YSU_00695 serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YSU_04410 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YSU_07245 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:ccoi00280]
D YSU_07605 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ccoi00290]
D YSU_04905 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YSU_08715 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YSU_08710 leuD; isopropylmalate isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YSU_08720 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D YSU_02500 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YSU_02505 acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YSU_05795 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YSU_00090 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YSU_07605 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YSU_06145 integral memnbrane protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D YSU_08725 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:ccoi00300]
D YSU_08140 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D YSU_02540 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YSU_03935 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YSU_05025 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YSU_07855 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D YSU_00825 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D YSU_07780 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YSU_03805 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YSU_01275 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YSU_07320 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YSU_00580 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YSU_05080 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation
C 00220 Arginine biosynthesis [PATH:ccoi00220]
D YSU_04105 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D YSU_05655 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YSU_04220 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YSU_06280 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D YSU_05505 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YSU_01445 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YSU_05250 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSU_07790 N-acetyltransferase GCN5 K22477 argO; N-acetylglutamate synthase [EC:2.3.1.1]
D YSU_07785 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D YSU_07795 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D YSU_07780 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:ccoi00330]
D YSU_05240 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D YSU_04640 agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D YSU_04630 apolipoprotein acyltransferase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D YSU_01330 carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D YSU_03640 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D YSU_01400 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YSU_08435 gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YSU_06095 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D YSU_05250 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:ccoi00340]
D YSU_00865 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D YSU_00835 phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D YSU_00845 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D YSU_02285 hisH; imidazole glycerol phosphate synthase K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D YSU_00850 imidazole glycerol phosphate synthase K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D YSU_02290 imidazole glycerol phosphate synthase K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D YSU_00840 imidazole glycerol phosphate synthase K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D YSU_00855 imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D YSU_07305 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YSU_00860 hisD; bifunctional histidinal dehydrogenase/histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:ccoi00350]
D YSU_05250 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSU_07305 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00360 Phenylalanine metabolism [PATH:ccoi00360]
D YSU_05250 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSU_07305 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:ccoi00380]
D YSU_03745 carbon-nitrogen hydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D YSU_01960 catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ccoi00400]
D YSU_05420 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YSU_04035 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D YSU_00330 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D YSU_06860 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YSU_06950 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YSU_04390 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D YSU_00615 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D YSU_07155 anthranilate synthase subunit I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YSU_07150 anthranilate synthase K13497 trpGD; anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18]
D YSU_07145 N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D YSU_06360 indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D YSU_07135 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YSU_07140 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YSU_07310 chloride transporter K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D YSU_08245 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D YSU_05250 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSU_07305 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:ccoi00410]
D YSU_07410 aspartate decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D YSU_07405 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:ccoi00430]
D YSU_05555 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YSU_05550 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:ccoi00450]
D YSU_01935 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YSU_03015 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YSU_06090 pyridine nucleotide-disulfide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D YSU_08155 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D YSU_01735 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YSU_01730 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YSU_00810 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D YSU_01395 segregation protein A K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YSU_01990 selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YSU_04855 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:ccoi00460]
D YSU_03745 carbon-nitrogen hydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D YSU_00155 ansB; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YSU_06875 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:ccoi00470]
D YSU_04340 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YSU_05065 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YSU_06280 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D YSU_00525 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YSU_06710 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YSU_00415 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D YSU_01275 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YSU_07320 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:ccoi00480]
D YSU_01220 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D YSU_04230 aminopeptidase A K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YSU_04155 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YSU_06210 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:ccoi00540]
D YSU_07580 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YSU_08235 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YSU_02510 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YSU_07475 hypothetical protein K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YSU_07465 ipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YSU_05000 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YSU_01700 arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YSU_06965 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YSU_05720 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YSU_04990 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YSU_05465 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YSU_03335 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D YSU_03250 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YSU_03245 cytochrome C biogenesis protein CcdA K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YSU_03235 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YSU_03240 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D YSU_03340 glycosyl transferase family 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YSU_03255 ADP-heptose--LPS heptosyltransferase K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ccoi00541]
D YSU_01245 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YSU_03350 UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YSU_01785 NAD-dependent epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YSU_03265 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YSU_03270 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YSU_02260 aminotransferase DegT K13010 per; perosamine synthetase [EC:2.6.1.102]
D YSU_04940 glmU; N-acetylglucosamine-1-phosphate uridyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YSU_02420 N-acetyl glucosamine/N-acetyl galactosamine epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D YSU_02415 C4 aminotransferase K15895 pseC; UDP-4-amino-4,6-dideoxy-L-N-acetyl-beta-L-altrosamine transaminase [EC:2.6.1.92]
D YSU_02295 N-acetyltransferase K15896 pseH; UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase [EC:2.3.1.202]
D YSU_02300 nucleotidase K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D YSU_02275 N-acetylneuraminate synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D YSU_02305 CMP-N-acetylneuraminic acid synthetase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D YSU_03400 UDP-GlcNAc C4,6 dehydratase K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D YSU_06325 aminotransferase DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D YSU_03285 WxcM-like protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
C 00550 Peptidoglycan biosynthesis [PATH:ccoi00550]
D YSU_04440 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YSU_08500 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YSU_03775 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YSU_06710 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YSU_00580 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YSU_05065 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YSU_05080 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YSU_04925 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D YSU_07815 UDP pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YSU_06705 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YSU_03855 UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YSU_06310 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YSU_07825 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YSU_05695 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YSU_06240 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:ccoi00552]
D YSU_07815 UDP pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:ccoi00543]
D YSU_05885 alginate O-acetyltransferase K19294 algI; alginate O-acetyltransferase complex protein AlgI
D YSU_05245 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:ccoi00730]
D YSU_06610 phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D YSU_03610 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D YSU_03820 thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D YSU_07715 cysteine desulfarase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YSU_03830 thiamine biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D YSU_07285 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YSU_03825 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D YSU_03835 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D YSU_03615 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D YSU_01630 thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D YSU_05760 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YSU_06685 transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:ccoi00740]
D YSU_04095 GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YSU_02490 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D YSU_00705 riboflavin deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YSU_06970 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D YSU_02910 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D YSU_05220 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:ccoi00750]
D YSU_07245 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YSU_02740 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D YSU_02745 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D YSU_04995 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:ccoi00760]
D YSU_07765 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D YSU_07425 stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YSU_01885 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D YSU_05005 NAD synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D YSU_03715 competence damage-inducible protein A K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D YSU_03795 hypothetical protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D YSU_05750 pnk; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:ccoi00770]
D YSU_02500 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YSU_02505 acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YSU_05795 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YSU_00090 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YSU_07400 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D YSU_07405 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D YSU_06915 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D YSU_04935 phosphopantothenate synthase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D YSU_05225 phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D YSU_01280 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D YSU_01855 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D YSU_07605 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YSU_07410 aspartate decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:ccoi00780]
D YSU_07370 biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D YSU_06675 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YSU_06695 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YSU_07585 3-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YSU_01905 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D YSU_07365 hypothetical protein K09789 bioG; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D YSU_07360 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YSU_07355 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YSU_07350 ATP-dependent dethiobiotin synthetase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YSU_08530 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D YSU_08405 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:ccoi00790]
D YSU_07895 GTP cyclohydrolase K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D YSU_05475 hypothetical protein K22391 E3.5.4.16; GTP cyclohydrolase I [EC:3.5.4.16]
D YSU_07100 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D YSU_00325 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D YSU_02555 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D YSU_03580 folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D YSU_04095 GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YSU_02490 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D YSU_04450 para-aminobenzoate synthase K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D YSU_08090 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YSU_08085 radical SAM protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YSU_00100 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YSU_08750 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YSU_08080 molybdenum cofactor biosynthesis protein MoeA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YSU_07675 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YSU_01315 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YSU_05375 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YSU_01310 molybdenum cofactor biosynthesis protein MoaA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D YSU_04435 molybdopterin biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D YSU_02140 molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:ccoi00670]
D YSU_04775 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D YSU_06875 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YSU_07930 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YSU_04655 phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YSU_08410 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YSU_00140 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D YSU_05095 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D YSU_03010 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YSU_02960 5,10-methenyltetrahydrofolate synthetase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:ccoi00860]
D YSU_04825 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSU_02445 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSU_06155 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D YSU_04785 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YSU_04100 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YSU_06140 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D YSU_03620 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D YSU_02725 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D YSU_04115 coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D YSU_07075 membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D YSU_06340 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D YSU_00790 hypothetical protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ccoi00130]
D YSU_08065 ubiA; prenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D YSU_06135 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D YSU_05220 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YSU_07270 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D YSU_02460 hypothetical protein K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D YSU_02050 hypothetical protein K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D YSU_00335 chlorohydrolase K20810 mqnX; aminodeoxyfutalosine deaminase [EC:3.5.4.40]
D YSU_08315 S-adenosylhomocysteine nucleosidase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D YSU_06565 hypothetical protein K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D YSU_08490 succinyl-CoA ligase K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:ccoi00900]
D YSU_07285 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YSU_02160 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D YSU_00815 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D YSU_03470 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D YSU_05565 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D YSU_04395 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D YSU_05220 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YSU_00565 geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D YSU_06160 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YSU_04925 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D YSU_00560 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:ccoi00523]
D YSU_03265 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YSU_03270 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures [PATH:ccoi01054]
D YSU_00415 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D YSU_03270 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:ccoi00332]
D YSU_08435 gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YSU_06095 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:ccoi00261]
D YSU_01735 cysN; sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YSU_01730 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YSU_00810 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D YSU_02540 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YSU_03935 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YSU_05025 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YSU_07855 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:ccoi00521]
D YSU_01865 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSU_08255 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YSU_03265 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YSU_03270 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:ccoi00525]
D YSU_03265 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YSU_03270 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:ccoi00401]
D YSU_08245 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D YSU_05250 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSU_07305 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D YSU_07155 anthranilate synthase subunit I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D YSU_08320 malonyl CoA-ACP transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YSU_06695 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YSU_01905 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D YSU_06680 acyl carrier protein K02078 acpP; acyl carrier protein
D YSU_02375 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:ccoi00999]
D YSU_03510 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YSU_06860 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D YSU_07600 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YSU_02645 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00627 Aminobenzoate degradation [PATH:ccoi00627]
D YSU_03745 carbon-nitrogen hydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D YSU_05220 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D YSU_07600 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YSU_02645 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
D YSU_03745 carbon-nitrogen hydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D YSU_07600 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YSU_02645 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:ccoi03020]
D YSU_06460 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YSU_06455 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YSU_00875 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YSU_06010 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:ccoi03010]
D YSU_04400 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D YSU_03110 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D YSU_08610 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D YSU_00880 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D YSU_08555 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D YSU_03670 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D YSU_06395 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D YSU_08570 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D YSU_01530 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D YSU_08645 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D YSU_00885 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D YSU_06400 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D YSU_00890 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D YSU_08575 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D YSU_04505 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D YSU_05450 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D YSU_08595 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D YSU_03660 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D YSU_08620 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D YSU_00800 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D YSU_07035 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D YSU_06475 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D YSU_08625 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D YSU_08640 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D YSU_08635 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D YSU_08580 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D YSU_08565 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D YSU_06465 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D YSU_05660 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D YSU_06470 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D YSU_06480 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D YSU_01525 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D YSU_08590 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D YSU_08550 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D YSU_08605 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D YSU_00870 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D YSU_08560 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D YSU_05430 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D YSU_07700 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D YSU_00450 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D YSU_08615 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D YSU_08630 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D YSU_08585 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D YSU_07335 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D YSU_00455 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D YSU_06625 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D YSU_08600 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D YSU_08110 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YSU_07230 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D YSU_06500 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D YSU_04695 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D YSU_07705 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D YSU_00895 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YSU_06735 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSU_05325 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSU_00160 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSU_06720 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSU_05310 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSU_00175 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSU_00180 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSU_05305 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSU_06715 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:ccoi00970]
D YSU_00165 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSU_05320 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSU_06730 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSU_08695 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSU_04015 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSU_06385 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSU_08445 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSU_08450 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSU_02820 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YSU_04550 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YSU_04570 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YSU_00725 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YSU_02485 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YSU_04560 tRNA-Arg K14224 tRNA-Glu; tRNA Glu
D YSU_08050 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YSU_00735 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YSU_04430 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YSU_06515 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YSU_08455 tRNA-His K14226 tRNA-His; tRNA His
D YSU_00170 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YSU_05315 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YSU_06725 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YSU_08440 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSU_00730 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSU_04190 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSU_04520 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSU_04565 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YSU_04580 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YSU_02480 tRNA-Met K14230 tRNA-Met; tRNA Met
D YSU_06055 tRNA-Met K14230 tRNA-Met; tRNA Met
D YSU_08680 tRNA-Met K14230 tRNA-Met; tRNA Met
D YSU_02475 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YSU_08460 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YSU_02105 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YSU_00720 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YSU_08685 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YSU_06510 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YSU_06525 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YSU_06495 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YSU_06520 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YSU_04555 tRNA-Val K14237 tRNA-Val; tRNA Val
D YSU_04575 tRNA-Val K14237 tRNA-Val; tRNA Val
D YSU_08700 tRNA-Val K14237 tRNA-Val; tRNA Val
D YSU_01420 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YSU_04825 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSU_02445 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSU_03730 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D YSU_03035 glutamyl amidotransferase K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D YSU_06895 glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D YSU_06320 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YSU_05755 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YSU_05480 glycyl-tRNA synthetase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YSU_02775 glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YSU_07810 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YSU_06940 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YSU_01990 selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YSU_05045 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YSU_04855 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YSU_08410 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YSU_05185 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YSU_03565 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YSU_03720 isoleucyl-tRNA synthase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YSU_06880 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YSU_03145 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YSU_06150 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YSU_05235 histidyl-tRNA synthase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YSU_04380 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YSU_04385 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YSU_06000 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YSU_06945 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:ccoi03060]
D YSU_08545 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D YSU_06490 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D YSU_07740 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D YSU_03555 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D YSU_03560 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D YSU_03550 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D YSU_04680 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YSU_04605 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YSU_05455 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YSU_02970 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YSU_03140 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D YSU_02525 preprotein translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB
D YSU_02520 preprotein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D YSU_04770 signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YSU_07080 peptidase A8 K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:ccoi04122]
D YSU_07715 cysteine desulfarase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YSU_00655 ATP-binding protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YSU_00270 thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YSU_01315 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YSU_08080 molybdenum cofactor biosynthesis protein MoeA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YSU_01320 molybdenum cofactor biosynthesis protein MoaD K03636 moaD; sulfur-carrier protein
D YSU_07675 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YSU_05375 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YSU_03815 thiamine biosynthesis protein K03154 thiS; sulfur carrier protein
D YSU_03820 thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:ccoi03018]
D YSU_02535 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YSU_08480 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YSU_02660 polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YSU_05800 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YSU_03215 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YSU_02955 ribonuclease K18682 rny; ribonucrease Y [EC:3.1.-.-]
D YSU_08655 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D YSU_05270 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YSU_02895 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YSU_02090 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YSU_05920 polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:ccoi03030]
D YSU_06615 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YSU_05410 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YSU_03210 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YSU_02550 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YSU_05805 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YSU_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YSU_06075 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YSU_00595 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YSU_03665 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSU_08960 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSU_00605 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YSU_00075 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YSU_02560 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:ccoi03410]
D YSU_02600 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YSU_00420 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YSU_00755 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YSU_04705 family 4 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D YSU_07660 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YSU_00150 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YSU_02560 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:ccoi03420]
D YSU_03595 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YSU_07165 UvrABC system subunit A K03701 uvrA; excinuclease ABC subunit A
D YSU_05625 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D YSU_02710 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D YSU_05175 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YSU_03485 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YSU_02560 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:ccoi03430]
D YSU_03785 DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2
D YSU_05175 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YSU_03485 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YSU_07250 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YSU_03740 coiled-coil protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YSU_00150 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YSU_03665 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSU_08960 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSU_05410 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YSU_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YSU_03210 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YSU_05805 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YSU_02550 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YSU_06615 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YSU_02560 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:ccoi03440]
D YSU_00150 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YSU_03665 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSU_08960 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSU_05960 recombinase RecR K06187 recR; recombination protein RecR
D YSU_08485 recombinase RecA K03553 recA; recombination protein RecA
D YSU_05060 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D YSU_02075 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YSU_08785 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D YSU_06555 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YSU_01510 recombinase RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D YSU_01120 helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D YSU_05410 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YSU_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YSU_03210 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YSU_05805 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YSU_02550 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YSU_06615 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YSU_05605 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:ccoi02010]
D YSU_01225 tungsten ABC transporter substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D YSU_01230 ABC transporter permease K05773 tupB; tungstate transport system permease protein
D YSU_01235 hypothetical protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D YSU_07375 molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D YSU_07385 molybdenum ABC transporter permease K02018 modB; molybdate transport system permease protein
D YSU_07390 GTPase K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YSU_08010 iron deficiency-induced protein A K02012 afuA; iron(III) transport system substrate-binding protein
D YSU_08015 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D YSU_08020 iron ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YSU_02030 toluene tolerance protein K07323 mlaC; phospholipid transport system substrate-binding protein
D YSU_00545 ABC transporter substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YSU_00555 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YSU_00550 sulfate ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YSU_05875 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YSU_05870 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein
D YSU_05865 phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein
D YSU_05860 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YSU_04265 amino acid ABC transporter substrate-binding protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein
D YSU_04270 amino acid ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D YSU_04275 amino acid ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D YSU_04260 ABC transporter ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YSU_05330 ABC transporter substrate-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D YSU_04360 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein
D YSU_04355 peptide ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D YSU_03955 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YSU_03960 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YSU_03965 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D YSU_03970 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D YSU_03975 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YSU_03980 livF; amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YSU_03020 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSU_05200 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSU_05205 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSU_05210 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSU_05195 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein
D YSU_05190 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D YSU_08170 ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D YSU_04760 ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D YSU_08180 membrane protein K09816 znuB; zinc transport system permease protein
D YSU_08175 cation ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YSU_01690 capsule polysaccharide transporter K10107 kpsE; capsular polysaccharide transport system permease protein
D YSU_01680 capsule polysaccharide transporter K09688 kpsM; capsular polysaccharide transport system permease protein
D YSU_01685 ABC transporter ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D YSU_04915 membrane protein K07091 lptF; lipopolysaccharide export system permease protein
D YSU_07325 membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D YSU_05640 lipopolysaccharide ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YSU_06025 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D YSU_06030 ABC transporter ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D YSU_05040 ABC transporter permease K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YSU_05905 macrolide ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YSU_00950 multidrug ABC transporter ATP-binding protein K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:ccoi03070]
D YSU_03895 multidrug transporter K12340 tolC; outer membrane protein
D YSU_01555 type II protein secretion system D protein K02453 gspD; general secretion pathway protein D
D YSU_01575 general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D YSU_02175 hypothetical protein K02456 gspG; general secretion pathway protein G
D YSU_01570 type II protein secretion system E protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YSU_03555 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D YSU_03560 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D YSU_06490 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D YSU_07740 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D YSU_08545 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D YSU_03550 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D YSU_04680 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YSU_04605 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YSU_02970 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YSU_05455 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YSU_03140 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D YSU_02525 preprotein translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB
D YSU_02520 preprotein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D YSU_08930 conjugal transfer protein TraC K03197 virB2; type IV secretion system protein VirB2
D YSU_08970 type IV secretion system protein K03200 virB5; type IV secretion system protein VirB5
D YSU_08995 hypothetical protein K03204 virB9; type IV secretion system protein VirB9
D YSU_08980 conjugal transfer protein TrbL K03201 virB6; type IV secretion system protein VirB6
D YSU_08990 conjugal transfer protein TraJ K03203 virB8; type IV secretion system protein VirB8
D YSU_09000 type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10
D YSU_08940 hypothetical protein K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D YSU_09005 hypothetical protein K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D YSU_09010 sodium:calcium antiporter K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:ccoi02020]
D YSU_05875 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YSU_02805 serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D YSU_05400 flagellin K02406 fliC; flagellin
D YSU_00305 RNA polymerase sigma 70 K02405 fliA; RNA polymerase sigma factor FliA
D YSU_07195 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D YSU_07265 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein
D YSU_07260 tricarboxylate transporter K07794 tctB; putative tricarboxylic transport membrane protein
D YSU_07255 tricarboxylic transport membrane protein K07795 tctC; putative tricarboxylic transport membrane protein
D YSU_00005 chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D YSU_01460 chemotaxis protein CheY K18344 vanRB; two-component system, OmpR family, response regulator VanR
D YSU_05630 C4-dicarboxylate ABC transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YSU_03475 carbon storage regulator K03563 csrA; carbon storage regulator
D YSU_02055 nucleotidyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D YSU_05505 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YSU_03060 C4-dicarboxylate ABC transporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D YSU_05635 RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D YSU_05970 quinone-reactive Ni/Fe-hydrogenase B-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D YSU_04255 SAM-dependent methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YSU_06740 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_01070 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_04650 membrane protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_07625 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_08165 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_07885 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_07490 chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D YSU_07485 chemotaxis protein A K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YSU_03405 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YSU_04250 chemotaxis protein B K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YSU_07480 chemotaxis protein CheY K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D YSU_03090 ubiquinol cytochrome C oxidoreductase K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D YSU_03095 ubiquinol cytochrome C oxidoreductase K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D YSU_03100 cytochrome C K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D YSU_03230 cytochrome C K08738 CYC; cytochrome c
D YSU_02850 cytochrome C553 K08738 CYC; cytochrome c
D YSU_01465 cytochrome oxidase subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D YSU_01470 peptidase S13 K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D YSU_01475 cytochrome B561 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D YSU_01480 cytochrome CBB3 K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D YSU_00390 cytochrome C oxidase subunit II K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YSU_00395 cytochrome C oxidase assembly protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YSU_03895 multidrug transporter K12340 tolC; outer membrane protein
D YSU_02630 phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D YSU_03090 ubiquinol cytochrome C oxidoreductase K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:ccoi02024]
D YSU_03030 S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YSU_07155 anthranilate synthase subunit I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YSU_05420 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YSU_05365 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YSU_05345 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YSU_05350 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YSU_03955 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YSU_03960 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YSU_03965 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D YSU_03970 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D YSU_03975 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YSU_03980 livF; amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YSU_04765 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YSU_04095 GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YSU_00705 riboflavin deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YSU_07060 outer membrane channel protein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D YSU_04680 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YSU_06490 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D YSU_07740 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D YSU_08545 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D YSU_03550 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D YSU_04605 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YSU_02970 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YSU_05455 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:ccoi02030]
D YSU_06740 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_01070 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_04650 membrane protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_07625 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_08165 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_07885 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_07485 chemotaxis protein A K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YSU_07490 chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D YSU_03405 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YSU_04250 chemotaxis protein B K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YSU_07480 chemotaxis protein CheY K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D YSU_04255 SAM-dependent methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YSU_07295 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YSU_00300 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YSU_07125 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YSU_00295 flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN
D YSU_07195 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D YSU_02620 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D YSU_07200 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:ccoi02040]
D YSU_06235 fliE; flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YSU_07300 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YSU_07295 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YSU_07290 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YSU_07890 ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YSU_00240 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YSU_01860 flagellar basal body protein FliL K02415 fliL; flagellar protein FliL
D YSU_00300 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YSU_07125 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YSU_00295 flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN
D YSU_04945 flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YSU_08495 flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YSU_03125 flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YSU_04495 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YSU_07205 flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YSU_06225 flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YSU_06230 flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YSU_00245 flgD; flagellar basal body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D YSU_08780 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D YSU_00250 flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D YSU_05515 flagellar basal body rod protein FlgG K02391 flgF; flagellar basal-body rod protein FlgF
D YSU_05510 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YSU_05560 flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D YSU_01610 flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D YSU_01605 hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D YSU_01590 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D YSU_04515 lagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D YSU_03920 hypothetical protein K09860 flgP; outer membrane protein FlgP
D YSU_03925 hypothetical protein K24346 flgQ; flagellar motility protein FlgQ
D YSU_05400 flagellin K02406 fliC; flagellin
D YSU_06125 flagellar cap protein FliD K02407 fliD; flagellar hook-associated protein 2
D YSU_06120 flagellar biosynthesis protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YSU_07195 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D YSU_02620 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D YSU_07200 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D YSU_04070 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YSU_05635 RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D YSU_00305 RNA polymerase sigma 70 K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D YSU_08480 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:ccoi01501]
D YSU_07050 hemolysin D K03585 acrA; membrane fusion protein, multidrug efflux system
D YSU_07055 transporter K18138 acrB; multidrug efflux pump
D YSU_07060 outer membrane channel protein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D YSU_03895 multidrug transporter K12340 tolC; outer membrane protein
D YSU_06310 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YSU_05695 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YSU_06240 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YSU_07395 beta-lactamase K19210 blaOXA-61; beta-lactamase class D OXA-61 [EC:3.5.2.6]
C 01502 Vancomycin resistance [PATH:ccoi01502]
D YSU_01460 chemotaxis protein CheY K18344 vanRB; two-component system, OmpR family, response regulator VanR
D YSU_05065 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YSU_04340 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YSU_05080 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YSU_06705 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YSU_03855 UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ccoi01503]
D YSU_05990 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YSU_02805 serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D YSU_07050 hemolysin D K03585 acrA; membrane fusion protein, multidrug efflux system
D YSU_07055 transporter K18138 acrB; multidrug efflux pump
D YSU_03895 multidrug transporter K12340 tolC; outer membrane protein
D YSU_07580 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:ccoi01000]
C 01001 Protein kinases [BR:ccoi01001]
D YSU_02880 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YSU_02815 ATPase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YSU_05955 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YSU_04535 signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D YSU_07485 chemotaxis protein A K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:ccoi01009]
D YSU_06260 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D YSU_07495 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:ccoi01002]
D YSU_07080 peptidase A8 K03101 lspA; signal peptidase II [EC:3.4.23.36]
D YSU_04920 multidrug transporter K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D YSU_05965 hydrogenase K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D YSU_02695 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YSU_05595 glutamine amidotransferase K23150 E3.5.1.129; N5-(cytidine 5'-diphosphoramidyl)-L-glutamine hydrolase [EC:3.5.1.129]
D YSU_00520 hypothetical protein K13695 nlpC; probable lipoprotein NlpC
D YSU_07860 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YSU_00065 glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YSU_02060 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YSU_04370 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D YSU_07865 CAAX amino terminal protease K07052 K07052; CAAX protease family protein
D YSU_03495 oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D YSU_04230 aminopeptidase A K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YSU_03805 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YSU_04155 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YSU_00530 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YSU_05690 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D YSU_03415 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YSU_04050 ATPase AAA K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YSU_03690 zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D YSU_02805 serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D YSU_07905 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D YSU_03655 Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D YSU_04770 signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YSU_06295 peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D YSU_00340 endopeptidase IV K04773 sppA; protease IV [EC:3.4.21.-]
D YSU_05665 peptidase K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D YSU_05495 protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D YSU_07830 alpha-2-macroglobulin K06894 yfhM; alpha-2-macroglobulin
C 01003 Glycosyltransferases [BR:ccoi01003]
D YSU_07825 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YSU_06310 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YSU_03380 glycosyl transferase family 1 K15914 pglA; N,N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase [EC:2.4.1.290]
D YSU_03360 general glycosylation pathway protein K17249 pglH; GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase [EC:2.4.1.292]
D YSU_03365 general glycosylation pathway protein K17250 pglI; GalNAc5-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase [EC:2.4.1.293]
D YSU_03370 glycosyl transferase family 1 K17248 pglJ; N-acetylgalactosamine-N,N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase [EC:2.4.1.291]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:ccoi01005]
D YSU_07580 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YSU_07465 ipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YSU_08235 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YSU_02510 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YSU_07475 hypothetical protein K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YSU_05000 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YSU_03335 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D YSU_05465 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YSU_06965 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YSU_04990 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YSU_05720 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YSU_01700 arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YSU_03340 glycosyl transferase family 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YSU_03255 ADP-heptose--LPS heptosyltransferase K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D YSU_03250 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YSU_03235 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YSU_03245 cytochrome C biogenesis protein CcdA K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YSU_03240 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ccoi01011]
D YSU_04440 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YSU_08500 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YSU_03775 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YSU_06710 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YSU_00580 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YSU_05065 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YSU_04340 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YSU_00525 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YSU_06705 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YSU_03855 UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YSU_07815 UDP pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YSU_05050 membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D YSU_06310 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YSU_07825 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YSU_05695 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YSU_06240 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YSU_04835 lytic transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YSU_05730 lytic transglycosylase K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D YSU_06220 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D YSU_05725 RlpA-like lipoprotein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YSU_05990 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:ccoi01004]
D YSU_08320 malonyl CoA-ACP transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YSU_02320 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YSU_02380 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YSU_07240 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YSU_06675 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YSU_06695 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YSU_07585 3-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YSU_01905 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D YSU_04295 hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D YSU_01240 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YSU_07555 acyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D YSU_07235 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YSU_07095 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YSU_06270 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:ccoi01008]
D YSU_00415 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:ccoi01006]
D YSU_00565 geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D YSU_06160 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YSU_04925 UDP pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D YSU_08060 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YSU_08065 ubiA; prenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:ccoi01007]
D YSU_04825 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSU_02445 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSU_06000 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YSU_06945 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YSU_05045 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YSU_03145 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YSU_04855 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YSU_03720 isoleucyl-tRNA synthase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YSU_05185 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YSU_03565 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YSU_06880 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YSU_05755 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YSU_05235 histidyl-tRNA synthase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YSU_05480 glycyl-tRNA synthetase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YSU_02775 glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YSU_06940 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YSU_06150 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YSU_07810 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YSU_06320 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YSU_04380 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YSU_04385 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YSU_05250 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSU_08135 aspartate aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D YSU_07305 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YSU_07360 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YSU_07780 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YSU_07355 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YSU_04785 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YSU_07605 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YSU_07245 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YSU_06325 aminotransferase DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D YSU_02260 aminotransferase DegT K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:ccoi00194]
D YSU_08360 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YSU_08365 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YSU_08370 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YSU_08375 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YSU_08385 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YSU_08390 F0F1 ATP synthase subunit B' K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YSU_04195 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D YSU_03000 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:ccoi03000]
D YSU_04075 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D YSU_07045 TetR family transcriptional regulator K18992 cmeR; TetR/AcrR family transcriptional regulator, cmeABC operon repressor
D YSU_02795 MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D YSU_06885 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D YSU_04765 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YSU_07280 peroxide stress regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D YSU_00405 tCrp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D YSU_01090 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D YSU_08405 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YSU_01400 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YSU_02865 CopG family transcriptional regulator K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D YSU_06300 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D YSU_08395 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YSU_05280 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D YSU_06685 transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D YSU_08270 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
C 03021 Transcription machinery [BR:ccoi03021]
D YSU_00875 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YSU_06460 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YSU_06455 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YSU_06010 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D YSU_04070 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YSU_05635 RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D YSU_00305 RNA polymerase sigma 70 K02405 fliA; RNA polymerase sigma factor FliA
D YSU_06575 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D YSU_06975 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D YSU_06485 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D YSU_08270 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D YSU_07470 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D YSU_03215 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:ccoi03019]
D YSU_00610 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YSU_08655 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D YSU_02955 ribonuclease K18682 rny; ribonucrease Y [EC:3.1.-.-]
D YSU_05800 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YSU_08480 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YSU_02660 polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YSU_03215 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YSU_05270 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YSU_02895 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YSU_02090 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YSU_05920 polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D YSU_02535 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YSU_03475 carbon storage regulator K03563 csrA; carbon storage regulator
C 03041 Spliceosome
C 03011 Ribosome [BR:ccoi03011]
D YSU_04400 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D YSU_03110 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D YSU_08610 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D YSU_00880 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D YSU_08555 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D YSU_03670 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D YSU_06395 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D YSU_08570 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D YSU_01530 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D YSU_08645 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D YSU_00885 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D YSU_06400 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D YSU_00890 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D YSU_08575 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D YSU_04505 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D YSU_05450 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D YSU_08595 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D YSU_03660 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D YSU_08620 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D YSU_00800 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D YSU_07035 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D YSU_06475 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D YSU_08625 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D YSU_08640 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D YSU_08635 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D YSU_08580 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D YSU_08565 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D YSU_05660 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D YSU_06470 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D YSU_06480 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D YSU_06465 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D YSU_01525 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D YSU_08590 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D YSU_08550 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D YSU_08605 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D YSU_00870 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D YSU_08560 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D YSU_05430 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D YSU_07700 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D YSU_00450 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D YSU_08615 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D YSU_08630 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D YSU_08585 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D YSU_00455 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D YSU_06625 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D YSU_08600 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D YSU_08110 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YSU_07230 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D YSU_06500 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D YSU_04695 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D YSU_07705 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D YSU_00895 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YSU_07335 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D YSU_00180 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSU_05305 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSU_06715 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSU_06735 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSU_05325 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSU_00160 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSU_06720 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSU_05310 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSU_00175 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:ccoi03009]
D YSU_00610 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YSU_05675 GTPase Era K03595 era; GTPase
D YSU_00460 GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D YSU_08270 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D YSU_06575 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D YSU_06975 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D YSU_06485 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D YSU_08660 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D YSU_08105 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D YSU_04090 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YSU_05535 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D YSU_08115 methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D YSU_02570 hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D YSU_08120 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D YSU_08265 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D YSU_08670 50S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D YSU_08650 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D YSU_00120 ribosomal pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D YSU_05460 ribosomal large subunit pseudouridine synthase C K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D YSU_02355 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D YSU_05440 ribosome maturation protein RimM K02860 rimM; 16S rRNA processing protein RimM
D YSU_01650 ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D YSU_03410 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D YSU_05780 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D YSU_06955 GTP-binding protein Der K03977 engA; GTPase
D YSU_06005 potassium-transporting ATPase subunit C K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YSU_08210 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D YSU_08205 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
D YSU_01880 hypothetical protein K09710 ybeB; ribosome-associated protein
D YSU_08295 heat-shock protein K07042 ybeY; probable rRNA maturation factor
D YSU_04225 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:ccoi03016]
D YSU_05100 multifunctional Cca protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D YSU_04825 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSU_02445 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSU_06150 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YSU_03720 isoleucyl-tRNA synthase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YSU_03565 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YSU_04855 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YSU_03145 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YSU_06880 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YSU_05755 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YSU_06320 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YSU_07810 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YSU_06940 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YSU_05045 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YSU_05185 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YSU_05235 histidyl-tRNA synthase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YSU_04380 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YSU_04385 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YSU_06000 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YSU_06945 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YSU_04375 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YSU_06035 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D YSU_04910 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D YSU_03480 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D YSU_01635 tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D YSU_07715 cysteine desulfarase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YSU_08060 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YSU_04670 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D YSU_03080 tRNA uridine 5-carboxymethylaminomethyl modification protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YSU_01395 segregation protein A K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YSU_08515 CysQ protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YSU_04690 ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D YSU_06110 bacterial RNase P K01978 rnpB; M1 RNA
D YSU_05480 glycyl-tRNA synthetase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YSU_02775 glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YSU_08280 tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D YSU_06585 (dimethylallyl)adenosine tRNA methylthiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D YSU_02580 tRNA methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D YSU_04175 tRNA methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D YSU_04890 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D YSU_05435 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D YSU_04345 RNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D YSU_06375 methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D YSU_05775 hypothetical protein K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-]
D YSU_00655 ATP-binding protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YSU_00270 thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YSU_08310 PP-loop family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D YSU_05985 FAD-dependent cmnm(5)s(2)U34 oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D YSU_02515 S-adenosylmethionine tRNA ribosyltransferase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D YSU_00100 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YSU_08090 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YSU_08085 radical SAM protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YSU_08750 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YSU_07590 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D YSU_06350 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D YSU_04025 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D YSU_01655 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D YSU_08230 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D YSU_02170 protein kinase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D YSU_05645 ATP-binding protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D YSU_07420 MoeB/ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D YSU_05800 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YSU_02660 polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:ccoi03012]
D YSU_08215 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D YSU_07805 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D YSU_03115 elongation factor Ts K02357 tsf; elongation factor Ts
D YSU_06505 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D YSU_06390 fusA; elongation factor P K02355 fusA; elongation factor G
D YSU_01995 translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D YSU_00795 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D YSU_07745 ribosome-recycling factor K02838 frr; ribosome recycling factor
D YSU_05390 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D YSU_07330 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D YSU_00900 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D YSU_06105 elongation factor P K02356 efp; elongation factor P
D YSU_01645 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:ccoi03110]
D YSU_03450 ATP-dependent Clp protease ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D YSU_06305 molecular chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D YSU_07575 ATP-dependent protease K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D YSU_05670 ATP-dependent protease K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D YSU_06260 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D YSU_05270 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YSU_02895 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YSU_03880 adenylosuccinate lyase K03686 dnaJ; molecular chaperone DnaJ
D YSU_05945 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YSU_02800 cobalamin ABC transporter permease K05516 cbpA; curved DNA-binding protein
D YSU_04660 molecular chaperone DnaJ K05801 djlA; DnaJ like chaperone protein
D YSU_05275 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D YSU_02900 molecular chaperone GroES K04078 groES; chaperonin GroES
D YSU_02805 serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D YSU_03415 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YSU_04050 ATPase AAA K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YSU_03000 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YSU_04325 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D YSU_05810 hydrogenase nickel incorporation protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D YSU_05830 hydrogenase K04652 hypB; hydrogenase nickel incorporation protein HypB
D YSU_03165 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D YSU_05530 peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D YSU_08325 peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D YSU_02605 peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D YSU_08150 thioredoxin K03671 TXN; thioredoxin
D YSU_02000 hypothetical protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YSU_05925 thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:ccoi04131]
D YSU_07220 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YSU_01890 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YSU_06925 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YSU_06260 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:ccoi03051]
D YSU_06260 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:ccoi03032]
D YSU_00605 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YSU_04305 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D YSU_00005 chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D YSU_06075 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YSU_00595 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YSU_03665 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSU_08960 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSU_05410 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YSU_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YSU_05805 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YSU_02550 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YSU_06615 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YSU_03210 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YSU_00075 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YSU_02560 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YSU_03915 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YSU_00015 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YSU_08535 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YSU_09050 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:ccoi03036]
D YSU_00610 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YSU_04305 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D YSU_02800 cobalamin ABC transporter permease K05516 cbpA; curved DNA-binding protein
D YSU_00005 chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D YSU_01255 DNA polymerase sliding clamp subunit K04047 dps; starvation-inducible DNA-binding protein
D YSU_05525 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D YSU_06030 ABC transporter ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D YSU_06240 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YSU_04510 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D YSU_03860 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D YSU_06025 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D YSU_05520 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YSU_05990 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YSU_07050 hemolysin D K03585 acrA; membrane fusion protein, multidrug efflux system
D YSU_07570 rod shape-determining protein Mbl K03569 mreB; rod shape-determining protein MreB and related proteins
D YSU_06050 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D YSU_08400 sporulation initiation inhibitor Soj K03496 parA; chromosome partitioning protein
D YSU_08395 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YSU_03080 tRNA uridine 5-carboxymethylaminomethyl modification protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YSU_04090 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YSU_04460 integrase K04763 xerD; integrase/recombinase XerD
D YSU_00820 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YSU_01150 cell filamentation protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D YSU_05705 GTP-binding protein YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:ccoi03400]
D YSU_04865 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D YSU_00420 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YSU_00755 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YSU_02600 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YSU_04705 family 4 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D YSU_07660 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YSU_00150 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YSU_02560 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YSU_07165 UvrABC system subunit A K03701 uvrA; excinuclease ABC subunit A
D YSU_05625 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D YSU_02710 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D YSU_05175 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YSU_03485 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YSU_06460 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YSU_06455 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YSU_00875 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YSU_06010 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D YSU_03595 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YSU_03785 DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2
D YSU_07250 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YSU_03740 coiled-coil protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YSU_05410 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YSU_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YSU_05805 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YSU_02550 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YSU_06615 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YSU_03210 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YSU_03665 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSU_08960 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSU_01510 recombinase RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D YSU_01120 helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D YSU_08485 recombinase RecA K03553 recA; recombination protein RecA
D YSU_05060 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D YSU_02075 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YSU_08785 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D YSU_05605 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D YSU_02995 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D YSU_06555 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YSU_05960 recombinase RecR K06187 recR; recombination protein RecR
D YSU_05745 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D YSU_03915 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YSU_00015 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YSU_08535 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YSU_04305 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D YSU_00130 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YSU_07760 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:ccoi03029]
D YSU_03095 ubiquinol cytochrome C oxidoreductase K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D YSU_08215 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D YSU_07805 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D YSU_03115 elongation factor Ts K02357 tsf; elongation factor Ts
D YSU_06505 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D YSU_06390 fusA; elongation factor P K02355 fusA; elongation factor G
D YSU_05675 GTPase Era K03595 era; GTPase
D YSU_06000 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YSU_03565 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YSU_05755 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YSU_03145 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YSU_03730 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D YSU_03035 glutamyl amidotransferase K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D YSU_06895 glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D YSU_02595 endonuclease K01173 ENDOG; endonuclease G, mitochondrial
D YSU_03665 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSU_08960 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSU_08250 membrane protein K07277 SAM50; outer membrane protein insertion porin family
D YSU_05270 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YSU_05275 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D YSU_02895 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YSU_02900 molecular chaperone GroES K04078 groES; chaperonin GroES
D YSU_03880 adenylosuccinate lyase K03686 dnaJ; molecular chaperone DnaJ
D YSU_05945 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YSU_07715 cysteine desulfarase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YSU_00820 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YSU_04680 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YSU_04315 hypothetical protein K07152 SCO1; protein SCO1
D YSU_06260 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:ccoi02000]
D YSU_05040 ABC transporter permease K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YSU_03355 ABC transporter ATP-binding protein K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-]
D YSU_05905 macrolide ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YSU_00950 multidrug ABC transporter ATP-binding protein K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
D YSU_04425 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D YSU_07375 molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D YSU_07385 molybdenum ABC transporter permease K02018 modB; molybdate transport system permease protein
D YSU_07390 GTPase K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YSU_01225 tungsten ABC transporter substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D YSU_01230 ABC transporter permease K05773 tupB; tungstate transport system permease protein
D YSU_01235 hypothetical protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D YSU_08010 iron deficiency-induced protein A K02012 afuA; iron(III) transport system substrate-binding protein
D YSU_08015 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D YSU_08020 iron ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YSU_05365 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YSU_05345 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YSU_05350 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YSU_00545 ABC transporter substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YSU_00555 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YSU_00550 sulfate ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YSU_00540 hypothetical protein K18480 linN; cholesterol transport system auxiliary component
D YSU_02030 toluene tolerance protein K07323 mlaC; phospholipid transport system substrate-binding protein
D YSU_05875 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YSU_05870 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein
D YSU_05865 phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein
D YSU_05860 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YSU_04265 amino acid ABC transporter substrate-binding protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein
D YSU_04270 amino acid ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D YSU_04275 amino acid ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D YSU_04260 ABC transporter ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YSU_05330 ABC transporter substrate-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D YSU_04360 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein
D YSU_04355 peptide ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D YSU_03955 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YSU_03960 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YSU_03965 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D YSU_03970 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D YSU_03975 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YSU_03980 livF; amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YSU_03020 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSU_05200 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSU_05205 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSU_05210 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSU_05195 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein
D YSU_05190 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D YSU_04960 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YSU_04145 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YSU_04585 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D YSU_06540 polar amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D YSU_06530 glutamine ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D YSU_00970 peptide ABC transporter substrate-binding protein K25103 nikZ; nickel transport system substrate-binding protein
D YSU_00980 peptide ABC transporter permease K25105 nikX; nickel transport system permease protein
D YSU_00985 peptide ABC transporter ATP-binding protein K25106 nikW; nickel transport system ATP-binding protein [EC:7.2.2.11]
D YSU_00990 peptide ABC transporter ATP-binding protein K25107 nikV; nickel transport system ATP-binding protein [EC:7.2.2.11]
D YSU_02115 enterochelin ABC transporter substrate-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D YSU_02125 iron ABC transporter permease K25283 yclO; iron-siderophore transport system permease protein
D YSU_02130 iron ABC transporter permease K25284 yclN; iron-siderophore transport system permease protein
D YSU_02120 iron ABC transporter ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D YSU_00770 hemin transporter K25034 btuF; cobalamin transport system substrate-binding protein
D YSU_00780 iron ABC transporter K25027 btuC; cobalamin transport system permease protein
D YSU_00775 heme ABC transporter ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D YSU_08170 ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D YSU_04760 ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D YSU_08180 membrane protein K09816 znuB; zinc transport system permease protein
D YSU_08175 cation ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YSU_01680 capsule polysaccharide transporter K09688 kpsM; capsular polysaccharide transport system permease protein
D YSU_01690 capsule polysaccharide transporter K10107 kpsE; capsular polysaccharide transport system permease protein
D YSU_01685 ABC transporter ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D YSU_04915 membrane protein K07091 lptF; lipopolysaccharide export system permease protein
D YSU_07325 membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D YSU_05640 lipopolysaccharide ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YSU_06025 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D YSU_06030 ABC transporter ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D YSU_00480 membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YSU_00485 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D YSU_04600 membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YSU_00475 GTPase K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YSU_03120 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YSU_06085 multidrug transporter MatE K26937 dinF; MATE family, multidrug efflux pump
D YSU_06420 major facilitator transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D YSU_00760 alpha-ketoglutarate permease K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D YSU_00945 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D YSU_07685 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D YSU_06430 MFS transporter K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein
D YSU_03850 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D YSU_00215 multidrug DMT transporter permease K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D YSU_02635 MFS transporter K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D YSU_01100 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D YSU_06570 MFS transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D YSU_07970 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D YSU_06345 ammonium transporter K03320 amt; ammonium transporter, Amt family
D YSU_07735 membrane protein K19416 yccA; modulator of FtsH protease
D YSU_07725 mechanosensitive ion channel protein K16052 ynaI; MscS family membrane protein
D YSU_07195 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D YSU_02620 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D YSU_07200 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D YSU_00675 biopolymer transporter ExbB K03561 exbB; biopolymer transport protein ExbB
D YSU_07990 biopolymer transporter ExbB K03561 exbB; biopolymer transport protein ExbB
D YSU_00670 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D YSU_07985 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D YSU_08350 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D YSU_05370 magnesium transporter K03284 corA; magnesium transporter
D YSU_04020 magnesium transporter CorA K16074 zntB; zinc transporter
D YSU_06265 chromosome condensation protein CrcB K06199 crcB; fluoride exporter
D YSU_07965 transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YSU_01535 outer membrane fibronectin-binding protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D YSU_06645 ligand-gated channel K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YSU_05285 ferric enterobactin uptake receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YSU_07995 TonB-denpendent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D YSU_00785 ligand-gated channel K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YSU_03895 multidrug transporter K12340 tolC; outer membrane protein
D YSU_07060 outer membrane channel protein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D YSU_08250 membrane protein K07277 SAM50; outer membrane protein insertion porin family
D YSU_03650 hypothetical protein K05807 bamD; outer membrane protein assembly factor BamD
D YSU_05710 organic solvent tolerance protein OstA K09774 lptA; lipopolysaccharide export system protein LptA
D YSU_02665 hypothetical protein K04744 lptD; LPS-assembly protein
D YSU_03195 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D YSU_04635 cation transporter K13283 fieF; ferrous-iron efflux pump FieF
D YSU_07460 zinc transporter ZupT K07238 TC.ZIP; zinc transporter, ZIP family
D YSU_07055 transporter K18138 acrB; multidrug efflux pump
D YSU_07340 quaternary ammonium compound-resistance protein SugE family protein K18924 ykkC; paired small multidrug resistance pump
D YSU_07345 quaternary ammonium transporter K18925 ykkD; paired small multidrug resistance pump
D YSU_03150 multidrug transporter K11742 mdtI; spermidine export protein MdtI
D YSU_03155 multidrug transporter K11743 mdtJ; spermidine export protein MdtJ
D YSU_00060 sodium:proton antiporter K07084 yuiF; putative amino acid transporter
D YSU_00430 C4-dicarboxylate ABC transporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D YSU_05630 C4-dicarboxylate ABC transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YSU_00380 lactate permease K03303 lutP; lactate permease
D YSU_01405 sodium:proline symporter K11928 putP; sodium/proline symporter
D YSU_00050 actP; actetate permease K14393 actP; cation/acetate symporter
D YSU_03060 C4-dicarboxylate ABC transporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D YSU_03505 serine/threonine transporter SstT K07862 sstT; serine/threonine transporter
D YSU_00510 nhaA; sodium:proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D YSU_00515 nhaA; sodium:proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D YSU_02790 potassium transporter K03455 KEA1_2_3; K+:H+ antiporter
D YSU_02470 potassium transporter K03498 trkH; trk/ktr system potassium uptake protein
D YSU_02465 potassium transporter K03499 trkA; trk/ktr system potassium uptake protein
D YSU_02045 guanine permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D YSU_00690 septum site-determining protein K03837 sdaC; serine transporter
D YSU_06245 Na/Pi-cotransporter K03324 yjbB; phosphate:Na+ symporter
D YSU_03085 arsenic transporter K03893 arsB; arsenical pump membrane protein
D YSU_01080 arsenic resistance protein K03325 ACR3; arsenite transporter
D YSU_01295 C4-dicarboxylate ABC transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D YSU_01940 C4-dicarboxylate ABC transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D YSU_05050 membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D YSU_05090 membrane protein K24180 mleP; malate permease and related proteins
D YSU_03800 amino acid transporter LysE K06895 lysE; L-lysine exporter family protein LysE/ArgO
D YSU_05115 threonine transporter RhtB K05834 rhtB; homoserine/homoserine lactone efflux protein
D YSU_05125 branched-chain amino acid permease K26605 azlC; branched chain amino acid efflux pump
D YSU_05120 branched-chain amino acid ABC transporter K26606 azlD; branched chain amino acid efflux pump
D YSU_07265 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein
D YSU_07260 tricarboxylate transporter K07794 tctB; putative tricarboxylic transport membrane protein
D YSU_07255 tricarboxylic transport membrane protein K07795 tctC; putative tricarboxylic transport membrane protein
D YSU_03860 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D YSU_08055 membrane protein K23242 mntP; manganese efflux pump family protein
D YSU_00500 iron permease K07243 FTR; high-affinity iron transporter
D YSU_00495 iron transporter K07230 p19; periplasmic iron binding protein
D YSU_04755 membrane protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D YSU_05290 cell envelope protein TonB K03832 tonB; periplasmic protein TonB
D YSU_07980 biopolymer transporter TonB K03832 tonB; periplasmic protein TonB
D YSU_08345 energry transducer TonB K03832 tonB; periplasmic protein TonB
D YSU_08335 peptidoglycan associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D YSU_08340 tolB; translocation protein TolB K03641 tolB; TolB protein
D YSU_07050 hemolysin D K03585 acrA; membrane fusion protein, multidrug efflux system
D YSU_05910 ABC transporter substrate-binding protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D YSU_01920 hypothetical protein K04758 feoA; ferrous iron transport protein A
D YSU_01915 iron transporter FeoB K04759 feoB; ferrous iron transport protein B
D YSU_07975 transporter K17938 sbmA; peptide/bleomycin uptake transporter
D YSU_05425 hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 02044 Secretion system [BR:ccoi02044]
D YSU_03895 multidrug transporter K12340 tolC; outer membrane protein
D YSU_01555 type II protein secretion system D protein K02453 gspD; general secretion pathway protein D
D YSU_01570 type II protein secretion system E protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YSU_01575 general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D YSU_02175 hypothetical protein K02456 gspG; general secretion pathway protein G
D YSU_04920 multidrug transporter K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D YSU_04830 membrane protein K02221 yggT; YggT family protein
D YSU_02945 competence protein K02238 comEC; competence protein ComEC
D YSU_03910 phosphoribosyltransferase K02242 comFC; competence protein ComFC
D YSU_04495 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YSU_07205 flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YSU_04810 hypothetical protein K04061 flhB2; flagellar biosynthesis protein
D YSU_07300 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YSU_07290 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YSU_07890 ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YSU_07125 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YSU_00295 flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN
D YSU_04945 flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YSU_08495 flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YSU_03125 flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YSU_08930 conjugal transfer protein TraC K03197 virB2; type IV secretion system protein VirB2
D YSU_08940 hypothetical protein K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D YSU_08970 type IV secretion system protein K03200 virB5; type IV secretion system protein VirB5
D YSU_08980 conjugal transfer protein TrbL K03201 virB6; type IV secretion system protein VirB6
D YSU_08990 conjugal transfer protein TraJ K03203 virB8; type IV secretion system protein VirB8
D YSU_08995 hypothetical protein K03204 virB9; type IV secretion system protein VirB9
D YSU_09000 type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10
D YSU_09005 hypothetical protein K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D YSU_09010 sodium:calcium antiporter K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D YSU_02000 hypothetical protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YSU_09015 cag pathogenicity island protein K12097 cag12; cag pathogenicity island protein 12
D YSU_04605 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YSU_03555 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D YSU_06490 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D YSU_03560 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D YSU_07740 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D YSU_08545 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D YSU_05455 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YSU_02970 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YSU_03550 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D YSU_04680 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YSU_03140 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D YSU_02525 preprotein translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB
D YSU_02520 preprotein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:ccoi02042]
D YSU_07450 cytochrome C oxidase subunit II K11014 cdtB; cytolethal distending toxin subunit B
D YSU_07455 toxin K11015 cdtC; cytolethal distending toxin subunit C
D YSU_07965 transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:ccoi02022]
D YSU_01460 chemotaxis protein CheY K18344 vanRB; two-component system, OmpR family, response regulator VanR
D YSU_02880 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YSU_02815 ATPase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YSU_05955 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YSU_05950 chemotaxis protein CheY K02483 K02483; two-component system, OmpR family, response regulator
D YSU_07105 chemotaxis protein CheY K02483 K02483; two-component system, OmpR family, response regulator
D YSU_02810 chemotaxis protein CheY K02483 K02483; two-component system, OmpR family, response regulator
D YSU_04415 chemotaxis protein CheY K02483 K02483; two-component system, OmpR family, response regulator
D YSU_04535 signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D YSU_03930 ATPase AAA K02481 flgR; two-component system, NtrC family, response regulator
D YSU_07485 chemotaxis protein A K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YSU_03405 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YSU_04250 chemotaxis protein B K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YSU_07480 chemotaxis protein CheY K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
C 02035 Bacterial motility proteins [BR:ccoi02035]
D YSU_07485 chemotaxis protein A K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YSU_07490 chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D YSU_04255 SAM-dependent methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YSU_04250 chemotaxis protein B K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YSU_03405 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YSU_07480 chemotaxis protein CheY K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D YSU_06740 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_01070 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_04650 membrane protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_07625 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_08165 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_07885 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSU_07290 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YSU_07890 ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YSU_04945 flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YSU_08495 flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YSU_03125 flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YSU_04495 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YSU_07205 flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YSU_07295 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YSU_00300 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YSU_07125 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YSU_00295 flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN
D YSU_07300 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YSU_01610 flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D YSU_05560 flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D YSU_01860 flagellar basal body protein FliL K02415 fliL; flagellar protein FliL
D YSU_06235 fliE; flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YSU_00240 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YSU_06225 flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YSU_06230 flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YSU_00245 flgD; flagellar basal body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D YSU_05515 flagellar basal body rod protein FlgG K02391 flgF; flagellar basal-body rod protein FlgF
D YSU_05510 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YSU_01605 hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D YSU_08780 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D YSU_00250 flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D YSU_01590 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D YSU_04515 lagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D YSU_03920 hypothetical protein K09860 flgP; outer membrane protein FlgP
D YSU_03925 hypothetical protein K24346 flgQ; flagellar motility protein FlgQ
D YSU_05400 flagellin K02406 fliC; flagellin
D YSU_06125 flagellar cap protein FliD K02407 fliD; flagellar hook-associated protein 2
D YSU_06120 flagellar biosynthesis protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YSU_00305 RNA polymerase sigma 70 K02405 fliA; RNA polymerase sigma factor FliA
D YSU_07195 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D YSU_02620 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D YSU_07200 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D YSU_03645 flagellar assembly protein FliW K13626 fliW; flagellar assembly factor FliW
D YSU_06130 flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D YSU_00320 flagellar biosynthesis regulator FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D YSU_00315 ATP-binding protein K04562 flhG; flagellar biosynthesis protein FlhG
D YSU_04920 multidrug transporter K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:ccoi04812]
D YSU_07570 rod shape-determining protein Mbl K03569 mreB; rod shape-determining protein MreB and related proteins
D YSU_05520 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YSU_05525 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D YSU_08400 sporulation initiation inhibitor Soj K03496 parA; chromosome partitioning protein
D YSU_08395 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:ccoi04147]
D YSU_06260 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D YSU_08480 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YSU_01890 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YSU_01895 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YSU_06925 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YSU_07210 peroxidase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D YSU_02895 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YSU_05270 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YSU_01250 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YSU_03735 inosine 5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YSU_06505 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D YSU_04375 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YSU_03175 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D YSU_05760 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YSU_04235 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YSU_04220 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YSU_05655 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YSU_04850 fructose-1 6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YSU_05505 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YSU_04100 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YSU_04410 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YSU_04655 phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YSU_01900 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YSU_01180 biotin transporter BioY K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:ccoi02048]
D YSU_01170 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D YSU_01155 restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D YSU_01145 DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D YSU_00200 type II restriction endonuclease K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D YSU_07800 DNA modification methylase K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D YSU_08190 ATPase AAA K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D YSU_08185 restriction endonuclease K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D YSU_02865 CopG family transcriptional regulator K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D YSU_05520 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YSU_07570 rod shape-determining protein Mbl K03569 mreB; rod shape-determining protein MreB and related proteins
D YSU_04825 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSU_02445 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSU_07715 cysteine desulfarase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:ccoi01504]
D YSU_07395 beta-lactamase K19210 blaOXA-61; beta-lactamase class D OXA-61 [EC:3.5.2.6]
D YSU_01125 hypothetical protein K05593 aadK; aminoglycoside 6-adenylyltransferase [EC:2.7.7.-]
D YSU_09070 tetracycline resistance protein tetM K18220 tetM; ribosomal protection tetracycline resistance protein
D YSU_06570 MFS transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D YSU_01460 chemotaxis protein CheY K18344 vanRB; two-component system, OmpR family, response regulator VanR
D YSU_07050 hemolysin D K03585 acrA; membrane fusion protein, multidrug efflux system
D YSU_07055 transporter K18138 acrB; multidrug efflux pump
D YSU_07060 outer membrane channel protein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D YSU_03895 multidrug transporter K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:ccoi03100]
D YSU_00165 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSU_05320 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSU_06730 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSU_08695 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSU_04015 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSU_06385 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSU_08445 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSU_08450 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSU_02820 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YSU_04550 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YSU_04570 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YSU_00725 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YSU_02485 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YSU_04560 tRNA-Arg K14224 tRNA-Glu; tRNA Glu
D YSU_08050 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YSU_00735 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YSU_04430 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YSU_06515 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YSU_08455 tRNA-His K14226 tRNA-His; tRNA His
D YSU_00170 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YSU_05315 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YSU_06725 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YSU_08440 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSU_00730 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSU_04190 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSU_04520 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSU_04565 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YSU_04580 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YSU_02480 tRNA-Met K14230 tRNA-Met; tRNA Met
D YSU_06055 tRNA-Met K14230 tRNA-Met; tRNA Met
D YSU_08680 tRNA-Met K14230 tRNA-Met; tRNA Met
D YSU_02475 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YSU_08460 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YSU_02105 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YSU_00720 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YSU_08685 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YSU_06510 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YSU_06525 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YSU_06495 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YSU_06520 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YSU_04555 tRNA-Val K14237 tRNA-Val; tRNA Val
D YSU_04575 tRNA-Val K14237 tRNA-Val; tRNA Val
D YSU_08700 tRNA-Val K14237 tRNA-Val; tRNA Val
D YSU_01420 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YSU_06735 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSU_05325 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSU_00160 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSU_06720 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSU_05310 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSU_00175 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSU_00180 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSU_05305 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSU_06715 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSU_06110 bacterial RNase P K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D YSU_01105 2,5-diketo-D-gluconic acid reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D YSU_08025 saccharopine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D YSU_01135 solA; N-methyltryptophan oxidase K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-]
D YSU_01190 NADPH quinone reductase MdaB K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D YSU_05770 methionine sulfoxide reductase A K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D YSU_03435 methionine sulfoxide reductase B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D YSU_06990 sulfoxide reductase catalytic subunit YedY K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D YSU_07090 cytochrome C biogenesis protein CcsA K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D YSU_07595 bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YSU_05165 thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YSU_05975 hydrogenase 2 large subunit K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1]
D YSU_01910 oxidoreductase K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D YSU_05980 quinone-reactive Ni/Fe-hydrogenase small chain K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D YSU_05880 ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D YSU_00025 4-cresol dehydrogenase K24452 pinA; (+)-pinoresinol hydroxylase [EC:1.17.9.2]
D YSU_00030 p-cresol methylhydroxylase subunit K24452 pinA; (+)-pinoresinol hydroxylase [EC:1.17.9.2]
D YSU_00045 cytochrome CBB3 K24453 pinB; (+)-pinoresinol hydroxylase [EC:1.17.9.2]
D YSU_01085 arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D YSU_07775 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D YSU_03105 SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D YSU_07070 radical SAM protein K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350]
D YSU_03275 acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D YSU_03540 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D YSU_03445 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D YSU_03875 arginyl-tRNA-protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D YSU_03375 general glycosylation pathway protein K17251 pglB; undecaprenyl-diphosphooligosaccharide---protein glycotransferase [EC:2.4.99.19]
D YSU_06850 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D YSU_05570 adenylylsulfate kinase K23148 E2.7.1.224; cytidine diphosphoramidate kinase [EC:2.7.1.224]
D YSU_05590 hypothetical protein K22424 E2.7.3.13; glutamine kinase [EC:2.7.3.13]
D YSU_05600 sugar nucleotidyltransferase K01009 E2.7.7.103; L-glutamine-phosphate cytidylyltransferase [EC:2.7.7.103]
D YSU_03385 UDP-galactose phosphate transferase K15915 pglC; undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase [EC:2.7.8.36]
D YSU_04715 acyl-CoA thioester hydrolase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D YSU_04065 phosphoglycerate mutase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D YSU_05735 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YSU_04160 nuclease K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D YSU_07910 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D YSU_02985 hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D YSU_01945 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D YSU_03680 sugar phosphate isomerase K23248 oiaC; 3-oxoisoapionate decarboxylase [EC:4.1.1.120]
D YSU_07925 kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D YSU_06410 hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D YSU_08465 DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D YSU_03205 cation-transporting ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
D YSU_00375 oxidoreductase K18928 lldE; L-lactate dehydrogenase complex protein LldE
D YSU_00370 iron-sulfur protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D YSU_00365 hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D YSU_01380 formate dehydrogenase accessory protein FdhD K02379 fdhD; FdhD protein
D YSU_07720 nitrogen-fixing protein NifU K13819 K13819; NifU-like protein
D YSU_05135 oxidoreductase K02570 napD; periplasmic nitrate reductase NapD
D YSU_01975 flavodoxin K03839 fldA; flavodoxin I
D YSU_05155 quinol dehydrogenase K02573 napG; ferredoxin-type protein NapG
D YSU_05150 quinol dehydrogenase K02574 napH; ferredoxin-type protein NapH
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D YSU_05405 YggS family pyridoxal phosphate enzyme K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D YSU_04845 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
C 99974 Translation
C 99975 Protein processing
D YSU_04645 hypothetical protein K03668 hslJ; heat shock protein HslJ
D YSU_03455 ATP-dependent Clp protease ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D YSU_07900 trigger factor K03545 tig; trigger factor
D YSU_06995 ferric reductase K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D YSU_03465 single-stranded DNA-binding protein K03664 smpB; SsrA-binding protein
D YSU_05825 hydrogenase formation protein K04653 hypC; hydrogenase expression/formation protein HypC
D YSU_05820 hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D YSU_05815 hydrogenase assembly protein HupF K04655 hypE; hydrogenase expression/formation protein HypE
D YSU_05835 3-hydroxydecanoyl-ACP:CoA transacylase K04656 hypF; hydrogenase maturation protein HypF
D YSU_07915 Fis family transcriptional regulator K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D YSU_03605 nuclease K07457 K07457; endonuclease III related protein
D YSU_08145 hypothetical protein K07460 yraN; putative endonuclease
D YSU_05785 DNA processing protein DprA K04096 smf; DNA processing protein
D YSU_07850 ATPase AAA K07478 ycaJ; putative ATPase
D YSU_08890 hypothetical protein K06919 K06919; putative DNA primase/helicase
D YSU_03345 polysaccharide biosynthesis protein K07501 K07501; 3'-5' exonuclease
D YSU_08810 transposase IS605 K07491 rayT; REP-associated tyrosine transposase
D YSU_08815 transposase IS605 K07496 K07496; putative transposase
C 99979 Viral proteins
C 99998 Others
D YSU_00575 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D YSU_03050 phosphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
D YSU_04200 sodium:alanine symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D YSU_04205 sodium:alanine symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D YSU_05935 transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D YSU_04350 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D YSU_00265 C4-dicarboxylate ABC transporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
C 99978 Cell growth
D YSU_04675 hypothetical protein K06346 jag; spoIIIJ-associated protein
D YSU_01205 allophanate hydrolase K06350 kipA; antagonist of KipI
D YSU_01210 allophanate hydrolase K06351 kipI; inhibitor of KinA
C 99993 Cell motility
D YSU_00440 hypothetical protein K07337 K07337; penicillin-binding protein activator
C 99995 Signaling proteins
D YSU_04285 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D YSU_00230 GTP-binding protein K06207 typA; GTP-binding protein
D YSU_07015 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D YSU_04610 membrane protein K03634 lolA; outer membrane lipoprotein carrier protein
D YSU_02035 hypothetical protein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D YSU_01835 capsule polysaccharide transporter K07265 kpsS; capsular polysaccharide export protein
D YSU_01830 capsule polysaccharide transporter K07266 kpsC; capsular polysaccharide export protein
D YSU_04595 membrane protein K06143 creD; inner membrane protein
C 99994 Others
D YSU_02870 iron-binding protein K07216 hr; hemerythrin
D YSU_00750 hemerythrin K07216 hr; hemerythrin
D YSU_00355 iron-binding protein K07216 hr; hemerythrin
D YSU_00360 hemerythrin family non-heme iron protein K07216 hr; hemerythrin
B
B 09194 Poorly characterized
C 99996 General function prediction only
D YSU_06890 colicin V synthesis protein K03558 cvpA; membrane protein required for colicin V production
D YSU_01270 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase K03796 bax; Bax protein
D YSU_06550 group III hemoglobin K06886 glbN; hemoglobin
D YSU_02940 ribonuclease BN K07058 K07058; membrane protein
D YSU_00955 glcG protein K11477 glcG; glc operon protein GlcG
D YSU_06865 membrane protein K03749 dedD; DedD protein
D YSU_07955 PhnA domain protein K06193 phnA; protein PhnA
C 99997 Function unknown
D YSU_04875 ankyrin K06867 K06867; uncharacterized protein
D YSU_01955 ankyrin K06867 K06867; uncharacterized protein
D YSU_06040 fibronectin K06882 K06882; uncharacterized protein
D YSU_01110 alpha/beta hydrolase K06889 K06889; uncharacterized protein
D YSU_04540 hypothetical protein K06921 K06921; uncharacterized protein
D YSU_03600 ATP-binding protein K06923 K06923; uncharacterized protein
D YSU_04900 CoA-binding protein K06929 K06929; uncharacterized protein
D YSU_06370 hypothetical protein K06940 K06940; uncharacterized protein
D YSU_00135 sodium:dicarboxylate symporter K06956 K06956; uncharacterized protein
D YSU_05445 RNA-binding protein K06960 K06960; uncharacterized protein
D YSU_04980 peptidase C39 K06992 K06992; uncharacterized protein
D YSU_02025 membrane protein K07003 K07003; uncharacterized protein
D YSU_01095 permease K07089 K07089; uncharacterized protein
D YSU_01580 membrane protein K07090 K07090; uncharacterized protein
D YSU_07160 membrane protein K07090 K07090; uncharacterized protein
D YSU_04490 hypothetical protein K07097 K07097; uncharacterized protein
D YSU_04820 metallophosphoesterase K07098 K07098; uncharacterized protein
D YSU_08770 membrane protein K07112 K07112; uncharacterized protein
D YSU_01415 membrane protein K07112 K07112; uncharacterized protein
D YSU_06820 hypothetical protein K07126 K07126; uncharacterized protein
D YSU_01265 DNA-binding protein K07133 K07133; uncharacterized protein
D YSU_05470 zinc ribbon domain-containing protein K07164 K07164; uncharacterized protein
D YSU_04685 membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein
D YSU_02495 aspartyl-tRNA amidotransferase subunit B K09117 K09117; uncharacterized protein
D YSU_01450 membrane protein K09792 K09792; uncharacterized protein
D YSU_06630 hypothetical protein K09794 K09794; uncharacterized protein
D YSU_05890 hypothetical protein K09795 K09795; uncharacterized protein
D YSU_00210 hypothetical protein K09797 K09797; uncharacterized protein
D YSU_05790 hypothetical protein K09798 K09798; uncharacterized protein
D YSU_03685 hypothetical protein K09824 virK; uncharacterized protein
D YSU_00435 hypothetical protein K09859 K09859; uncharacterized protein
D YSU_04135 hypothetical protein K09861 K09861; uncharacterized protein
D YSU_04895 membrane protein K09943 K09943; uncharacterized protein
D YSU_04030 potassium transporter TrkA K09944 K09944; uncharacterized protein
D YSU_01675 hypothetical protein K09979 K09979; uncharacterized protein
D YSU_03190 hypothetical protein K09981 K09981; uncharacterized protein
D YSU_08220 hypothetical protein K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 15, 2024